Iron in PDB 2olp: Structure and Ligand Selection of Hemoglobin II From Lucina Pectinata

The structure of Structure and Ligand Selection of Hemoglobin II From Lucina Pectinata, PDB code: 2olp was solved by J.A.Gavira, A.Camara-Artigas, W.De Jesus, J.Lopez-Garriga, J.M.Garcia-Ruiz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.84 / 1.93
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	73.918, 73.918, 152.355, 90.00, 90.00, 90.00
R / Rfree (%)	16.5 / 19.3

The binding sites of Iron atom in the Structure and Ligand Selection of Hemoglobin II From Lucina Pectinata (pdb code 2olp). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure and Ligand Selection of Hemoglobin II From Lucina Pectinata, PDB code: 2olp:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Structure and Ligand Selection of Hemoglobin II From Lucina Pectinata


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure and Ligand Selection of Hemoglobin II From Lucina Pectinata within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe500 b:22.5 occ:1.00 FE A:HEM500 0.0 22.5 1.0 NC A:HEM500 2.0 23.0 1.0 ND A:HEM500 2.0 19.0 1.0 NA A:HEM500 2.1 21.8 1.0 NB A:HEM500 2.1 22.3 1.0 NE2 A:HIS97 2.1 23.2 1.0 O2 A:OXY501 2.1 21.5 1.0 O1 A:OXY501 2.9 30.9 1.0 C4B A:HEM500 3.0 24.7 1.0 C4D A:HEM500 3.0 19.6 1.0 C1A A:HEM500 3.0 20.4 1.0 CE1 A:HIS97 3.1 26.1 1.0 C1D A:HEM500 3.1 22.2 1.0 C4C A:HEM500 3.1 24.6 1.0 C1C A:HEM500 3.1 26.0 1.0 CD2 A:HIS97 3.1 26.0 1.0 C4A A:HEM500 3.1 19.0 1.0 C1B A:HEM500 3.1 22.4 1.0 CHA A:HEM500 3.4 21.3 1.0 CHC A:HEM500 3.4 24.7 1.0 CHD A:HEM500 3.5 21.6 1.0 CHB A:HEM500 3.5 23.6 1.0 ND1 A:HIS97 4.2 26.9 1.0 CG A:HIS97 4.2 27.0 1.0 C3B A:HEM500 4.3 24.6 1.0 C2A A:HEM500 4.3 20.1 1.0 C2D A:HEM500 4.3 18.3 1.0 C3D A:HEM500 4.3 19.0 1.0 C3A A:HEM500 4.3 18.9 1.0 C3C A:HEM500 4.3 24.0 1.0 C2C A:HEM500 4.3 24.9 1.0 C2B A:HEM500 4.3 24.8 1.0 NE2 A:GLN65 4.4 26.4 1.0 CZ A:PHE44 4.7 29.9 1.0 OH A:TYR30 4.8 28.6 1.0 NH1 A:ARG100 4.9 27.7 1.0

Iron binding site 2 out of 2 in the Structure and Ligand Selection of Hemoglobin II From Lucina Pectinata


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure and Ligand Selection of Hemoglobin II From Lucina Pectinata within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe500 b:23.8 occ:1.00 FE B:HEM500 0.0 23.8 1.0 O2 B:OXY501 1.7 27.5 1.0 NE2 B:HIS97 2.0 24.9 1.0 NC B:HEM500 2.1 24.5 1.0 ND B:HEM500 2.1 23.2 1.0 NA B:HEM500 2.1 21.9 1.0 NB B:HEM500 2.1 22.5 1.0 O1 B:OXY501 2.8 28.2 1.0 CE1 B:HIS97 3.0 25.2 1.0 C4C B:HEM500 3.0 24.8 1.0 C1A B:HEM500 3.1 23.0 1.0 C1D B:HEM500 3.1 25.6 1.0 C1C B:HEM500 3.1 25.8 1.0 CD2 B:HIS97 3.1 25.2 1.0 C4B B:HEM500 3.1 26.1 1.0 C4D B:HEM500 3.1 23.1 1.0 C4A B:HEM500 3.1 21.8 1.0 C1B B:HEM500 3.1 24.5 1.0 CHD B:HEM500 3.4 25.0 1.0 CHA B:HEM500 3.4 22.6 1.0 CHC B:HEM500 3.4 25.3 1.0 CHB B:HEM500 3.5 22.7 1.0 ND1 B:HIS97 4.1 26.9 1.0 CG B:HIS97 4.2 26.0 1.0 C3C B:HEM500 4.3 25.4 1.0 C2A B:HEM500 4.3 20.7 1.0 C2C B:HEM500 4.3 23.9 1.0 C3A B:HEM500 4.3 19.8 1.0 C3D B:HEM500 4.3 21.8 1.0 C2D B:HEM500 4.3 23.8 1.0 C3B B:HEM500 4.4 26.1 1.0 C2B B:HEM500 4.4 26.1 1.0 NE2 B:GLN65 4.4 30.1 1.0 OH B:TYR30 4.5 33.7 1.0 NH1 B:ARG100 4.9 27.7 1.0 CZ B:PHE44 4.9 28.6 1.0

J.A.Gavira, A.Camara-Artigas, W.De Jesus-Bonilla, J.Lopez-Garriga, A.Lewis, R.Pietri, S.R.Yeh, C.L.Cadilla, J.M.Garcia-Ruiz. Structure and Ligand Selection of Hemoglobin II From Lucina Pectinata J.Biol.Chem. V. 283 9414 2008.
ISSN: ISSN 0021-9258
PubMed: 18203714
DOI: 10.1074/JBC.M705026200