Iron in PDB 2ot4: Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens

The structure of Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens, PDB code: 2ot4 was solved by K.M.Polyakov, K.M.Boyko, A.Slutsky, T.V.Tikhonova, A.N.Antipov, R.A.Zvyagilskaya, A.N.Popov, V.S.Lamzin, G.P.Bourenkov, V.O.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.04 / 1.50
Space group	P 21 3
Cell size a, b, c (Å), α, β, γ (°)	193.917, 193.917, 193.917, 90.00, 90.00, 90.00
R / Rfree (%)	12.6 / 14.1

The structure of Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Iron atom in the Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens (pdb code 2ot4). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 18 binding sites of Iron where determined in the Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens, PDB code: 2ot4:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 18 in the Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1004 b:13.5 occ:1.00 FE A:HEC1004 0.0 13.5 1.0 HZ2 A:LYS188 1.1 16.5 0.0 NZ A:LYS188 1.9 16.5 1.0 ND A:HEC1004 2.0 12.2 1.0 NA A:HEC1004 2.0 13.9 1.0 NC A:HEC1004 2.0 13.2 1.0 NB A:HEC1004 2.0 13.2 1.0 O A:HOH2972 2.1 16.2 1.0 HZ1 A:LYS188 2.1 16.5 0.0 HZ3 A:LYS188 2.3 16.5 0.0 C1D A:HEC1004 3.0 12.1 1.0 C4D A:HEC1004 3.0 11.9 1.0 C1A A:HEC1004 3.0 12.5 1.0 C1C A:HEC1004 3.0 13.5 1.0 CE A:LYS188 3.0 20.6 1.0 C4C A:HEC1004 3.0 12.9 1.0 C4A A:HEC1004 3.0 13.7 1.0 C4B A:HEC1004 3.1 13.0 1.0 C1B A:HEC1004 3.1 14.2 1.0 HE3 A:LYS188 3.1 19.2 1.0 HE2 A:LYS188 3.2 20.1 1.0 CHC A:HEC1004 3.4 13.9 1.0 CHA A:HEC1004 3.4 13.3 1.0 CHD A:HEC1004 3.4 12.7 1.0 CHB A:HEC1004 3.4 13.8 1.0 HE2 A:HIS361 3.6 14.3 0.0 HMD1 A:HEC1006 4.0 12.3 0.0 C3D A:HEC1004 4.2 13.1 1.0 C2D A:HEC1004 4.2 12.4 1.0 C2A A:HEC1004 4.2 13.3 1.0 C3C A:HEC1004 4.2 13.6 1.0 C2C A:HEC1004 4.3 12.7 1.0 C3A A:HEC1004 4.3 12.4 1.0 O A:HOH2971 4.3 25.2 1.0 C2B A:HEC1004 4.3 14.9 1.0 C3B A:HEC1004 4.3 14.3 1.0 NE2 A:HIS361 4.3 14.3 1.0 HHC A:HEC1004 4.4 13.5 1.0 HHD A:HEC1004 4.4 12.9 1.0 HHA A:HEC1004 4.4 12.7 1.0 HHB A:HEC1004 4.4 14.0 1.0 CD A:LYS188 4.4 17.3 1.0 O A:HOH2958 4.5 16.4 1.0 HD3 A:LYS188 4.5 18.0 1.0 HH21 A:ARG131 4.6 14.3 1.0 HD2 A:LYS188 4.7 17.9 1.0 HB2 A:CYS187 4.7 13.5 1.0 HMD3 A:HEC1006 4.7 12.3 0.0 O A:HOH2973 4.8 25.5 1.0 OH A:TYR303 4.8 21.1 1.0 HH22 A:ARG131 4.8 14.2 1.0 CMD A:HEC1006 4.8 12.3 1.0 HE21 A:GLN360 4.8 10.3 0.0 HD1 A:HIS126 4.9 14.5 0.0 HE22 A:GLN360 4.9 10.3 0.0 HD2 A:HIS361 5.0 13.7 1.0

Iron binding site 2 out of 18 in the Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1005 b:12.8 occ:1.00 FE A:HEC1005 0.0 12.8 1.0 NE2 A:HIS398 2.0 12.7 1.0 ND A:HEC1005 2.0 12.1 1.0 NC A:HEC1005 2.0 12.3 1.0 NE2 A:HIS231 2.0 12.9 1.0 NA A:HEC1005 2.0 12.1 1.0 NB A:HEC1005 2.0 11.8 1.0 CE1 A:HIS231 3.0 13.8 1.0 CD2 A:HIS398 3.0 12.6 1.0 CE1 A:HIS398 3.0 13.3 1.0 C1C A:HEC1005 3.0 12.3 1.0 C1D A:HEC1005 3.0 12.4 1.0 C4D A:HEC1005 3.0 12.0 1.0 CD2 A:HIS231 3.0 13.1 1.0 C4A A:HEC1005 3.0 12.4 1.0 C4B A:HEC1005 3.0 11.1 1.0 C4C A:HEC1005 3.0 11.8 1.0 C1A A:HEC1005 3.0 12.7 1.0 C1B A:HEC1005 3.1 12.2 1.0 HE1 A:HIS231 3.1 13.1 1.0 HD2 A:HIS398 3.1 13.0 1.0 HE1 A:HIS398 3.2 13.4 1.0 HD2 A:HIS231 3.2 13.0 1.0 CHC A:HEC1005 3.4 12.7 1.0 CHD A:HEC1005 3.4 13.0 1.0 CHB A:HEC1005 3.4 12.6 1.0 CHA A:HEC1005 3.4 13.6 1.0 ND1 A:HIS231 4.1 12.8 1.0 HE2 A:MET384 4.1 17.9 0.0 ND1 A:HIS398 4.1 12.9 1.0 CG A:HIS398 4.1 12.5 1.0 HMA1 A:HEC1003 4.1 13.0 0.0 CG A:HIS231 4.2 12.7 1.0 C2C A:HEC1005 4.2 12.6 1.0 C3A A:HEC1005 4.3 13.9 1.0 C2D A:HEC1005 4.3 13.0 1.0 C3D A:HEC1005 4.3 13.2 1.0 C2A A:HEC1005 4.3 12.8 1.0 C3C A:HEC1005 4.3 11.8 1.0 C2B A:HEC1005 4.3 12.8 1.0 C3B A:HEC1005 4.3 11.5 1.0 HHC A:HEC1005 4.3 12.5 1.0 HHD A:HEC1005 4.4 12.7 1.0 HHB A:HEC1005 4.4 12.6 1.0 HHA A:HEC1005 4.4 13.5 1.0 HG2 A:GLN73 4.5 12.9 1.0 HB3 A:GLN73 4.6 13.5 1.0 HB2 A:CYS230 4.7 12.2 1.0 HD1 A:HIS231 4.9 12.8 0.0 HD1 A:HIS398 4.9 13.0 0.0

Iron binding site 3 out of 18 in the Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1006 b:11.8 occ:1.00 FE A:HEC1006 0.0 11.8 1.0 NB A:HEC1006 2.0 11.0 1.0 NE2 A:HIS300 2.0 12.1 1.0 NE2 A:HIS119 2.0 11.2 1.0 NA A:HEC1006 2.0 10.6 1.0 ND A:HEC1006 2.0 11.7 1.0 NC A:HEC1006 2.0 10.4 1.0 CE1 A:HIS119 2.9 12.1 1.0 CE1 A:HIS300 3.0 11.8 1.0 C1B A:HEC1006 3.0 10.7 1.0 C4A A:HEC1006 3.0 10.8 1.0 C1A A:HEC1006 3.0 12.1 1.0 CD2 A:HIS300 3.0 11.7 1.0 C1D A:HEC1006 3.0 12.5 1.0 C4C A:HEC1006 3.0 11.2 1.0 CD2 A:HIS119 3.0 11.7 1.0 C4B A:HEC1006 3.0 10.9 1.0 C1C A:HEC1006 3.0 10.7 1.0 C4D A:HEC1006 3.0 11.9 1.0 HE1 A:HIS119 3.1 11.6 1.0 HE1 A:HIS300 3.1 11.8 1.0 HD2 A:HIS300 3.2 11.8 1.0 HD2 A:HIS119 3.3 11.5 1.0 CHB A:HEC1006 3.4 11.8 1.0 CHD A:HEC1006 3.4 11.8 1.0 CHA A:HEC1006 3.4 12.0 1.0 CHC A:HEC1006 3.4 12.2 1.0 HMD1 A:HEC1004 4.1 13.6 0.0 ND1 A:HIS119 4.1 11.4 1.0 ND1 A:HIS300 4.1 11.1 1.0 CG A:HIS300 4.2 11.4 1.0 CG A:HIS119 4.2 10.8 1.0 C3A A:HEC1006 4.2 10.2 1.0 C2A A:HEC1006 4.2 11.2 1.0 C2B A:HEC1006 4.3 11.6 1.0 C2D A:HEC1006 4.3 12.0 1.0 C3B A:HEC1006 4.3 11.3 1.0 C2C A:HEC1006 4.3 10.7 1.0 C3C A:HEC1006 4.3 11.5 1.0 C3D A:HEC1006 4.3 11.3 1.0 HHB A:HEC1006 4.3 11.5 1.0 HHD A:HEC1006 4.4 11.6 1.0 HHA A:HEC1006 4.4 12.2 1.0 HHC A:HEC1006 4.4 11.9 1.0 HE2 A:MET122 4.5 13.8 0.0 HAD1 A:HEC1004 4.6 12.8 1.0 HMA1 A:HEC1007 4.7 13.0 0.0 HE1 A:MET122 4.8 13.8 0.0 HD1 A:HIS119 4.8 11.4 0.0 HB3 A:GLN400 4.9 15.8 0.5 HD1 A:HIS300 4.9 11.1 0.0 HD21 A:LEU225 4.9 19.6 0.0 HB2 A:CYS299 5.0 12.3 1.0

Iron binding site 4 out of 18 in the Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1007 b:12.7 occ:1.00 FE A:HEC1007 0.0 12.7 1.0 NC A:HEC1007 2.0 12.2 1.0 NE2 A:HIS491 2.0 13.0 1.0 NE2 A:HIS383 2.0 12.8 1.0 NB A:HEC1007 2.0 11.4 1.0 ND A:HEC1007 2.0 11.5 1.0 NA A:HEC1007 2.0 12.3 1.0 CE1 A:HIS491 2.9 13.0 1.0 CE1 A:HIS383 3.0 12.9 1.0 CD2 A:HIS383 3.0 12.4 1.0 C4B A:HEC1007 3.0 12.7 1.0 C1C A:HEC1007 3.0 12.8 1.0 C4D A:HEC1007 3.0 11.3 1.0 C4C A:HEC1007 3.0 13.1 1.0 CD2 A:HIS491 3.0 12.4 1.0 C1A A:HEC1007 3.0 11.4 1.0 C4A A:HEC1007 3.0 11.9 1.0 C1B A:HEC1007 3.0 12.3 1.0 C1D A:HEC1007 3.0 12.2 1.0 HE1 A:HIS491 3.1 12.7 1.0 HE1 A:HIS383 3.2 12.8 1.0 HD2 A:HIS383 3.2 12.5 1.0 HD2 A:HIS491 3.3 12.5 1.0 CHC A:HEC1007 3.4 12.9 1.0 CHA A:HEC1007 3.4 12.6 1.0 CHD A:HEC1007 3.4 13.2 1.0 CHB A:HEC1007 3.4 13.2 1.0 ND1 A:HIS491 4.0 12.9 1.0 ND1 A:HIS383 4.1 13.1 1.0 CG A:HIS383 4.1 11.2 1.0 CG A:HIS491 4.1 11.9 1.0 C2C A:HEC1007 4.2 12.2 1.0 C2A A:HEC1007 4.2 12.6 1.0 C3C A:HEC1007 4.2 12.7 1.0 C3A A:HEC1007 4.2 12.9 1.0 C3B A:HEC1007 4.2 12.4 1.0 C2B A:HEC1007 4.2 13.4 1.0 C3D A:HEC1007 4.3 12.7 1.0 C2D A:HEC1007 4.3 12.5 1.0 HHC A:HEC1007 4.3 12.7 1.0 HB3 A:SER487 4.3 12.8 1.0 HHA A:HEC1007 4.4 12.2 1.0 HHD A:HEC1007 4.4 13.2 1.0 HHB A:HEC1007 4.4 13.0 1.0 HB2 A:CYS382 4.8 12.9 1.0 HD1 A:HIS491 4.8 12.9 0.0 HD1 A:HIS383 4.9 13.2 0.0 HB2 A:SER487 4.9 12.7 1.0 HD2 A:PHE490 5.0 14.4 1.0

Iron binding site 5 out of 18 in the Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1008 b:15.0 occ:0.50 FE A:HEC1008 0.0 15.0 0.5 FE A:HEC1008 0.3 21.7 0.5 NA A:HEC1008 1.8 23.4 0.5 NE2 A:HIS372 1.9 17.5 1.0 NB A:HEC1008 1.9 13.4 0.5 NE2 A:HIS415 1.9 19.6 1.0 ND A:HEC1008 2.0 24.1 0.5 NA A:HEC1008 2.0 14.2 0.5 ND A:HEC1008 2.0 17.0 0.5 NC A:HEC1008 2.0 12.5 0.5 NB A:HEC1008 2.0 22.1 0.5 NC A:HEC1008 2.4 23.9 0.5 C1A A:HEC1008 2.8 24.4 0.5 CE1 A:HIS415 2.9 21.1 1.0 C4A A:HEC1008 2.9 23.3 0.5 CE1 A:HIS372 2.9 18.6 1.0 C4D A:HEC1008 2.9 25.6 0.5 C1B A:HEC1008 2.9 13.7 0.5 C1B A:HEC1008 3.0 21.9 0.5 CD2 A:HIS372 3.0 17.9 1.0 C4B A:HEC1008 3.0 12.6 0.5 HE1 A:HIS415 3.0 20.3 1.0 C4A A:HEC1008 3.0 14.0 0.5 CD2 A:HIS415 3.0 18.0 1.0 C1A A:HEC1008 3.0 16.4 0.5 C4D A:HEC1008 3.0 20.0 0.5 C1D A:HEC1008 3.0 18.8 0.5 C1C A:HEC1008 3.1 13.8 0.5 C1D A:HEC1008 3.1 25.7 0.5 C4C A:HEC1008 3.1 16.5 0.5 HE1 A:HIS372 3.1 17.6 1.0 HD2 A:HIS372 3.2 17.6 1.0 C4B A:HEC1008 3.2 22.2 0.5 CHA A:HEC1008 3.2 24.9 0.5 CHB A:HEC1008 3.3 22.9 0.5 HD2 A:HIS415 3.3 19.2 1.0 CHB A:HEC1008 3.3 15.6 0.5 C4C A:HEC1008 3.4 23.1 0.5 C1C A:HEC1008 3.4 23.9 0.5 CHA A:HEC1008 3.4 18.0 0.5 CHC A:HEC1008 3.4 14.2 0.5 CHD A:HEC1008 3.4 17.9 0.5 CHD A:HEC1008 3.6 24.6 0.5 CHC A:HEC1008 3.7 23.4 0.5 ND1 A:HIS415 4.0 21.5 1.0 ND1 A:HIS372 4.0 18.4 1.0 C2A A:HEC1008 4.1 24.7 0.5 C3A A:HEC1008 4.1 24.5 0.5 CG A:HIS372 4.1 16.1 1.0 CG A:HIS415 4.1 18.8 1.0 C2B A:HEC1008 4.1 14.9 0.5 C3B A:HEC1008 4.2 12.5 0.5 C3D A:HEC1008 4.2 27.6 0.5 HHA A:HEC1008 4.2 24.9 0.5 C2B A:HEC1008 4.2 21.4 0.5 C3A A:HEC1008 4.2 16.0 0.5 C2A A:HEC1008 4.2 17.7 0.5 C2D A:HEC1008 4.3 27.1 0.5 HHB A:HEC1008 4.3 22.9 0.5 C3D A:HEC1008 4.3 22.0 0.5 C2D A:HEC1008 4.3 20.7 0.5 HBC3 A:HEC1007 4.3 15.2 0.0 C2C A:HEC1008 4.3 15.0 0.5 HHB A:HEC1008 4.3 15.1 0.5 C3C A:HEC1008 4.3 17.8 0.5 C3B A:HEC1008 4.3 21.2 0.5 HHA A:HEC1008 4.4 18.0 0.5 HHC A:HEC1008 4.4 14.0 0.5 HHD A:HEC1008 4.4 17.8 0.5 HHD A:HEC1008 4.5 24.5 0.5 C2C A:HEC1008 4.6 22.4 0.5 C3C A:HEC1008 4.6 22.2 0.5 HHC A:HEC1008 4.6 23.2 0.5 HZ3 A:TRP418 4.7 16.7 1.0 HBC2 A:HEC1007 4.8 15.2 0.0 HD1 A:HIS415 4.8 21.5 0.0 HD1 A:HIS372 4.8 18.4 0.0 HZ A:PHE490 4.9 14.4 1.0 CBC A:HEC1007 5.0 15.3 1.0

Iron binding site 6 out of 18 in the Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1008 b:21.7 occ:0.50 FE A:HEC1008 0.0 21.7 0.5 FE A:HEC1008 0.3 15.0 0.5 NC A:HEC1008 1.8 12.5 0.5 NE2 A:HIS415 1.9 19.6 1.0 ND A:HEC1008 1.9 24.1 0.5 NB A:HEC1008 1.9 13.4 0.5 NE2 A:HIS372 1.9 17.5 1.0 ND A:HEC1008 2.0 17.0 0.5 NB A:HEC1008 2.1 22.1 0.5 NA A:HEC1008 2.1 23.4 0.5 NC A:HEC1008 2.1 23.9 0.5 NA A:HEC1008 2.3 14.2 0.5 C1C A:HEC1008 2.8 13.8 0.5 C4C A:HEC1008 2.8 16.5 0.5 C4B A:HEC1008 2.9 12.6 0.5 CD2 A:HIS372 2.9 17.9 1.0 C1D A:HEC1008 2.9 25.7 0.5 C1D A:HEC1008 2.9 18.8 0.5 CE1 A:HIS415 2.9 21.1 1.0 CD2 A:HIS415 3.0 18.0 1.0 C4D A:HEC1008 3.0 25.6 0.5 CE1 A:HIS372 3.0 18.6 1.0 HD2 A:HIS372 3.1 17.6 1.0 C1B A:HEC1008 3.1 13.7 0.5 C4C A:HEC1008 3.1 23.1 0.5 C1A A:HEC1008 3.1 24.4 0.5 C1B A:HEC1008 3.1 21.9 0.5 C4B A:HEC1008 3.1 22.2 0.5 HE1 A:HIS415 3.1 20.3 1.0 C4A A:HEC1008 3.1 23.3 0.5 C4D A:HEC1008 3.1 20.0 0.5 C1C A:HEC1008 3.1 23.9 0.5 HD2 A:HIS415 3.2 19.2 1.0 CHC A:HEC1008 3.2 14.2 0.5 CHD A:HEC1008 3.2 17.9 0.5 HE1 A:HIS372 3.3 17.6 1.0 C4A A:HEC1008 3.3 14.0 0.5 C1A A:HEC1008 3.3 16.4 0.5 CHD A:HEC1008 3.3 24.6 0.5 CHA A:HEC1008 3.4 24.9 0.5 CHB A:HEC1008 3.5 22.9 0.5 CHC A:HEC1008 3.5 23.4 0.5 CHB A:HEC1008 3.6 15.6 0.5 CHA A:HEC1008 3.6 18.0 0.5 C2C A:HEC1008 4.0 15.0 0.5 C3C A:HEC1008 4.0 17.8 0.5 ND1 A:HIS415 4.1 21.5 1.0 CG A:HIS372 4.1 16.1 1.0 ND1 A:HIS372 4.1 18.4 1.0 CG A:HIS415 4.1 18.8 1.0 C3B A:HEC1008 4.1 12.5 0.5 C2D A:HEC1008 4.1 27.1 0.5 C3D A:HEC1008 4.2 27.6 0.5 HHC A:HEC1008 4.2 14.0 0.5 HHD A:HEC1008 4.2 17.8 0.5 C2B A:HEC1008 4.2 14.9 0.5 C2D A:HEC1008 4.2 20.7 0.5 HBC3 A:HEC1007 4.2 15.2 0.0 HHD A:HEC1008 4.3 24.5 0.5 C2C A:HEC1008 4.3 22.4 0.5 C3D A:HEC1008 4.3 22.0 0.5 C3C A:HEC1008 4.3 22.2 0.5 C2B A:HEC1008 4.3 21.4 0.5 C2A A:HEC1008 4.3 24.7 0.5 C3B A:HEC1008 4.3 21.2 0.5 C3A A:HEC1008 4.3 24.5 0.5 HHA A:HEC1008 4.4 24.9 0.5 HHB A:HEC1008 4.5 22.9 0.5 HHC A:HEC1008 4.5 23.2 0.5 HHB A:HEC1008 4.5 15.1 0.5 C3A A:HEC1008 4.5 16.0 0.5 C2A A:HEC1008 4.5 17.7 0.5 HHA A:HEC1008 4.6 18.0 0.5 HBC2 A:HEC1007 4.6 15.2 0.0 HD1 A:HIS415 4.8 21.5 0.0 HZ3 A:TRP418 4.9 16.7 1.0 HD1 A:HIS372 4.9 18.4 0.0 CBC A:HEC1007 4.9 15.3 1.0 HZ A:PHE490 5.0 14.4 1.0

Iron binding site 7 out of 18 in the Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1002 b:13.5 occ:1.00 FE A:HEC1002 0.0 13.5 1.0 NE2 A:HIS234 2.0 13.2 1.0 NE2 A:HIS39 2.0 14.0 1.0 ND A:HEC1002 2.0 12.8 1.0 NC A:HEC1002 2.0 13.2 1.0 NB A:HEC1002 2.0 12.9 1.0 NA A:HEC1002 2.0 12.8 1.0 CE1 A:HIS39 2.9 14.1 1.0 CE1 A:HIS234 3.0 13.2 1.0 CD2 A:HIS234 3.0 13.4 1.0 C1D A:HEC1002 3.0 13.2 1.0 C1C A:HEC1002 3.0 13.2 1.0 C4A A:HEC1002 3.0 13.0 1.0 CD2 A:HIS39 3.0 13.6 1.0 C4C A:HEC1002 3.0 12.9 1.0 C1A A:HEC1002 3.0 12.9 1.0 C1B A:HEC1002 3.0 14.1 1.0 C4D A:HEC1002 3.1 13.3 1.0 C4B A:HEC1002 3.1 13.6 1.0 HE1 A:HIS39 3.1 14.2 1.0 HE1 A:HIS234 3.2 13.5 1.0 HD2 A:HIS234 3.2 13.5 1.0 HD2 A:HIS39 3.3 14.0 1.0 CHD A:HEC1002 3.4 13.0 1.0 CHB A:HEC1002 3.4 14.4 1.0 CHA A:HEC1002 3.4 14.3 1.0 CHC A:HEC1002 3.4 14.0 1.0 ND1 A:HIS39 4.1 13.1 1.0 ND1 A:HIS234 4.1 12.6 1.0 CG A:HIS234 4.1 13.2 1.0 CG A:HIS39 4.2 13.1 1.0 HMA1 A:HEC1001 4.2 14.3 0.0 C2D A:HEC1002 4.2 12.9 1.0 C3A A:HEC1002 4.2 13.8 1.0 C2A A:HEC1002 4.3 13.8 1.0 C2C A:HEC1002 4.3 14.2 1.0 C3C A:HEC1002 4.3 13.1 1.0 C3D A:HEC1002 4.3 13.9 1.0 C2B A:HEC1002 4.3 13.5 1.0 C3B A:HEC1002 4.3 13.7 1.0 HHD A:HEC1002 4.4 12.4 1.0 HHB A:HEC1002 4.4 13.6 1.0 HHA A:HEC1002 4.4 14.0 1.0 HHC A:HEC1002 4.4 14.2 1.0 HG2 A:PRO233 4.5 13.4 1.0 HB2 A:CYS38 4.6 13.9 1.0 HG22 A:ILE21 4.7 17.2 0.0 HB2 A:PRO233 4.8 13.3 1.0 HD11 A:ILE21 4.8 20.1 0.0 HD1 A:HIS39 4.8 13.0 0.0 HD1 A:HIS234 4.9 12.5 0.0 HG23 A:THR59 4.9 15.3 0.0

Iron binding site 8 out of 18 in the Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1003 b:13.1 occ:1.00 FE A:HEC1003 0.0 13.1 1.0 NE2 A:HIS70 2.0 13.5 1.0 NA A:HEC1003 2.0 11.5 1.0 NE2 A:HIS30 2.0 13.5 1.0 NC A:HEC1003 2.0 11.8 1.0 NB A:HEC1003 2.0 12.9 1.0 ND A:HEC1003 2.0 11.8 1.0 CE1 A:HIS30 3.0 13.6 1.0 CE1 A:HIS70 3.0 12.7 1.0 CD2 A:HIS70 3.0 13.5 1.0 C4A A:HEC1003 3.0 12.5 1.0 C1B A:HEC1003 3.0 13.2 1.0 CD2 A:HIS30 3.0 12.5 1.0 C4C A:HEC1003 3.0 12.0 1.0 C1A A:HEC1003 3.0 13.0 1.0 C1C A:HEC1003 3.0 12.1 1.0 C1D A:HEC1003 3.0 12.5 1.0 C4B A:HEC1003 3.0 12.3 1.0 C4D A:HEC1003 3.1 12.2 1.0 HE1 A:HIS30 3.2 13.2 1.0 HE1 A:HIS70 3.2 12.9 1.0 HD2 A:HIS70 3.2 13.1 1.0 HD2 A:HIS30 3.2 12.9 1.0 CHB A:HEC1003 3.4 12.9 1.0 CHD A:HEC1003 3.4 13.0 1.0 CHC A:HEC1003 3.4 12.6 1.0 CHA A:HEC1003 3.4 13.0 1.0 ND1 A:HIS30 4.1 12.6 1.0 ND1 A:HIS70 4.1 13.1 1.0 CG A:HIS70 4.1 11.8 1.0 HMA1 A:HEC1005 4.2 13.6 0.0 CG A:HIS30 4.2 12.9 1.0 C2B A:HEC1003 4.2 13.3 1.0 C3A A:HEC1003 4.2 12.8 1.0 C2A A:HEC1003 4.2 12.3 1.0 C3C A:HEC1003 4.3 11.9 1.0 C2C A:HEC1003 4.3 13.2 1.0 C2D A:HEC1003 4.3 14.6 1.0 C3B A:HEC1003 4.3 12.8 1.0 C3D A:HEC1003 4.3 13.6 1.0 HHB A:HEC1003 4.3 12.8 1.0 HHD A:HEC1003 4.4 13.0 1.0 HHC A:HEC1003 4.4 12.9 1.0 HHA A:HEC1003 4.4 13.1 1.0 HG22 A:VAL33 4.4 14.2 0.0 HB1 A:ALA236 4.6 14.0 0.0 HB2 A:CYS69 4.7 14.0 1.0 HB2 A:ALA236 4.8 14.0 0.0 HD1 A:HIS30 4.9 12.6 0.0 HD1 A:HIS70 4.9 13.2 0.0

Iron binding site 9 out of 18 in the Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1001 b:14.5 occ:1.00 FE A:HEC1001 0.0 14.5 1.0 NE2 A:HIS18 1.9 13.6 1.0 ND A:HEC1001 2.0 13.6 1.0 NE2 A:HIS44 2.0 14.2 1.0 NC A:HEC1001 2.0 14.1 1.0 NA A:HEC1001 2.0 13.5 1.0 NB A:HEC1001 2.0 13.3 1.0 CE1 A:HIS18 2.9 14.5 1.0 CE1 A:HIS44 3.0 14.7 1.0 CD2 A:HIS44 3.0 15.3 1.0 CD2 A:HIS18 3.0 13.9 1.0 C1D A:HEC1001 3.0 13.6 1.0 C1C A:HEC1001 3.0 15.3 1.0 C4D A:HEC1001 3.0 13.6 1.0 C1A A:HEC1001 3.0 14.4 1.0 C4A A:HEC1001 3.0 12.8 1.0 C4C A:HEC1001 3.1 15.4 1.0 C4B A:HEC1001 3.1 14.3 1.0 C1B A:HEC1001 3.1 13.4 1.0 HE1 A:HIS18 3.1 14.6 1.0 HE1 A:HIS44 3.2 15.1 1.0 HD2 A:HIS44 3.2 14.9 1.0 HD2 A:HIS18 3.2 14.4 1.0 CHC A:HEC1001 3.4 15.4 1.0 CHD A:HEC1001 3.4 15.0 1.0 CHB A:HEC1001 3.4 14.6 1.0 CHA A:HEC1001 3.4 14.9 1.0 ND1 A:HIS18 4.1 14.2 1.0 HMA1 A:HEC1002 4.1 13.7 0.0 ND1 A:HIS44 4.1 14.6 1.0 HG3 A:PRO57 4.1 16.0 1.0 CG A:HIS18 4.1 14.6 1.0 CG A:HIS44 4.1 14.3 1.0 C2D A:HEC1001 4.2 15.6 1.0 C2C A:HEC1001 4.3 15.4 1.0 C2A A:HEC1001 4.3 14.1 1.0 C3D A:HEC1001 4.3 15.4 1.0 C3C A:HEC1001 4.3 15.5 1.0 C3A A:HEC1001 4.3 12.7 1.0 C2B A:HEC1001 4.3 14.7 1.0 C3B A:HEC1001 4.3 13.9 1.0 HHC A:HEC1001 4.4 15.4 1.0 HHD A:HEC1001 4.4 14.2 1.0 HHB A:HEC1001 4.4 13.7 1.0 HHA A:HEC1001 4.4 14.8 1.0 HB2 A:CYS17 4.8 17.6 1.0 HD1 A:HIS18 4.8 14.1 0.0 HD1 A:HIS44 4.9 14.5 0.0 CMA A:HEC1002 5.0 13.8 1.0

Iron binding site 10 out of 18 in the Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Nitratireducens within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1004 b:12.2 occ:1.00 FE B:HEC1004 0.0 12.2 1.0 HZ2 B:LYS188 1.1 15.2 0.0 NZ B:LYS188 2.0 15.2 1.0 ND B:HEC1004 2.0 11.1 1.0 NC B:HEC1004 2.0 12.2 1.0 NB B:HEC1004 2.0 11.6 1.0 NA B:HEC1004 2.0 11.9 1.0 O B:HOH2765 2.1 14.0 1.0 HZ1 B:LYS188 2.3 15.2 0.0 HZ3 B:LYS188 2.3 15.2 0.0 CE B:LYS188 3.0 17.9 1.0 C1A B:HEC1004 3.0 11.5 1.0 C1C B:HEC1004 3.0 11.6 1.0 C4D B:HEC1004 3.0 10.7 1.0 C1D B:HEC1004 3.0 10.3 1.0 C4C B:HEC1004 3.0 12.2 1.0 C4A B:HEC1004 3.0 11.5 1.0 C4B B:HEC1004 3.1 11.4 1.0 C1B B:HEC1004 3.1 11.8 1.0 HE3 B:LYS188 3.1 17.2 1.0 HE2 B:LYS188 3.1 16.8 1.0 CHA B:HEC1004 3.4 11.7 1.0 CHC B:HEC1004 3.4 12.1 1.0 CHB B:HEC1004 3.4 12.3 1.0 CHD B:HEC1004 3.4 11.6 1.0 HE2 B:HIS361 3.5 12.6 0.0 HMD1 B:HEC1006 4.1 11.2 0.0 O B:HOH2621 4.2 21.4 1.0 C2A B:HEC1004 4.2 11.3 1.0 C3A B:HEC1004 4.3 10.7 1.0 NE2 B:HIS361 4.3 12.6 1.0 C3D B:HEC1004 4.3 10.9 1.0 C2C B:HEC1004 4.3 12.1 1.0 C3C B:HEC1004 4.3 12.4 1.0 C2D B:HEC1004 4.3 11.6 1.0 C3B B:HEC1004 4.3 13.3 1.0 C2B B:HEC1004 4.3 13.1 1.0 HHA B:HEC1004 4.4 11.4 1.0 HHC B:HEC1004 4.4 11.5 1.0 CD B:LYS188 4.4 14.4 1.0 HHB B:HEC1004 4.4 12.3 1.0 HHD B:HEC1004 4.4 11.9 1.0 HD3 B:LYS188 4.5 14.9 1.0 O B:HOH2611 4.5 14.5 1.0 HH21 B:ARG131 4.6 13.5 1.0 HB2 B:CYS187 4.8 12.2 1.0 HH22 B:ARG131 4.8 13.0 1.0 HMD3 B:HEC1006 4.8 11.2 0.0 OH B:TYR303 4.8 18.7 1.0 HD1 B:HIS126 4.8 12.6 0.0 CMD B:HEC1006 4.9 11.2 1.0 HG2 B:LYS188 5.0 12.9 1.0 HB3 B:CYS187 5.0 11.9 1.0 HD2 B:HIS361 5.0 12.4 1.0 HD2 B:LYS188 5.0 15.0 1.0

K.M.Polyakov, K.M.Boyko, T.V.Tikhonova, A.Slutsky, A.N.Antipov, R.A.Zvyagilskaya, A.N.Popov, G.P.Bourenkov, V.S.Lamzin, V.O.Popov. High-Resolution Structural Analysis of A Novel Octaheme Cytochrome C Nitrite Reductase From the Haloalkaliphilic Bacterium Thioalkalivibrio Nitratireducens. J.Mol.Biol. V. 389 846 2009.
ISSN: ISSN 0022-2836
PubMed: 19393666
DOI: 10.1016/J.JMB.2009.04.037