Atomistry » Iron » PDB 2orl-2pg7 » 2p0b
Atomistry »
  Iron »
    PDB 2orl-2pg7 »
      2p0b »

Iron in PDB 2p0b: Crystal Structure of Chemically-Reduced E.Coli Nrfb

Protein crystallography data

The structure of Crystal Structure of Chemically-Reduced E.Coli Nrfb, PDB code: 2p0b was solved by T.A.Clarke, D.J.Richardson, A.M.Hemmings, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 7.99 / 1.74
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.727, 59.433, 65.318, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 19.2

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Chemically-Reduced E.Coli Nrfb (pdb code 2p0b). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Crystal Structure of Chemically-Reduced E.Coli Nrfb, PDB code: 2p0b:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 2p0b

Go back to Iron Binding Sites List in 2p0b
Iron binding site 1 out of 6 in the Crystal Structure of Chemically-Reduced E.Coli Nrfb


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Chemically-Reduced E.Coli Nrfb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:9.1
occ:1.00
FE A:HEC201 0.0 9.1 1.0
NA A:HEC201 2.0 6.0 1.0
NE2 A:HIS28 2.0 6.0 1.0
NC A:HEC201 2.0 8.2 1.0
ND A:HEC201 2.1 9.4 1.0
NB A:HEC201 2.1 7.9 1.0
NE2 A:HIS64 2.1 10.4 1.0
CE1 A:HIS28 2.9 7.9 1.0
CD2 A:HIS64 3.0 10.5 1.0
C4A A:HEC201 3.0 7.4 1.0
C4C A:HEC201 3.0 10.4 1.0
C1A A:HEC201 3.1 7.7 1.0
C1B A:HEC201 3.1 9.0 1.0
C1D A:HEC201 3.1 11.3 1.0
C1C A:HEC201 3.1 8.4 1.0
CD2 A:HIS28 3.1 9.3 1.0
C4D A:HEC201 3.1 8.9 1.0
C4B A:HEC201 3.2 8.9 1.0
CE1 A:HIS64 3.2 11.2 1.0
CHB A:HEC201 3.4 8.7 1.0
CHD A:HEC201 3.4 9.8 1.0
CHA A:HEC201 3.4 8.9 1.0
CHC A:HEC201 3.5 8.5 1.0
ND1 A:HIS28 4.1 8.0 1.0
CG A:HIS64 4.2 11.5 1.0
CG A:HIS28 4.2 7.9 1.0
ND1 A:HIS64 4.2 11.3 1.0
C3A A:HEC201 4.2 5.8 1.0
C3C A:HEC201 4.3 8.5 1.0
C2A A:HEC201 4.3 8.7 1.0
C2C A:HEC201 4.3 10.1 1.0
C2B A:HEC201 4.3 8.6 1.0
C2D A:HEC201 4.3 11.4 1.0
C3B A:HEC201 4.3 7.4 1.0
C3D A:HEC201 4.4 11.3 1.0

Iron binding site 2 out of 6 in 2p0b

Go back to Iron Binding Sites List in 2p0b
Iron binding site 2 out of 6 in the Crystal Structure of Chemically-Reduced E.Coli Nrfb


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Chemically-Reduced E.Coli Nrfb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:4.2
occ:1.00
FE A:HEC202 0.0 4.2 1.0
NA A:HEC202 2.0 4.5 1.0
NC A:HEC202 2.0 4.2 1.0
NE2 A:HIS120 2.1 5.5 1.0
NB A:HEC202 2.1 2.6 1.0
ND A:HEC202 2.1 3.3 1.0
NE2 A:HIS57 2.1 2.5 1.0
CE1 A:HIS120 3.0 7.6 1.0
C1A A:HEC202 3.0 4.2 1.0
C4A A:HEC202 3.0 6.7 1.0
C4D A:HEC202 3.0 3.0 1.0
CD2 A:HIS57 3.0 2.6 1.0
C4B A:HEC202 3.1 2.9 1.0
CE1 A:HIS57 3.1 3.7 1.0
C1C A:HEC202 3.1 2.0 1.0
C4C A:HEC202 3.1 3.5 1.0
C1B A:HEC202 3.1 4.6 1.0
C1D A:HEC202 3.1 3.6 1.0
CD2 A:HIS120 3.1 5.6 1.0
CHA A:HEC202 3.3 4.4 1.0
CHC A:HEC202 3.4 3.3 1.0
CHB A:HEC202 3.4 5.2 1.0
CHD A:HEC202 3.4 3.3 1.0
ND1 A:HIS120 4.1 6.0 1.0
ND1 A:HIS57 4.2 2.7 1.0
CG A:HIS57 4.2 3.1 1.0
CG A:HIS120 4.2 5.4 1.0
C2A A:HEC202 4.2 7.5 1.0
C3A A:HEC202 4.2 5.6 1.0
C3B A:HEC202 4.3 4.7 1.0
C3D A:HEC202 4.3 2.9 1.0
C3C A:HEC202 4.3 2.6 1.0
C2B A:HEC202 4.3 3.8 1.0
C2C A:HEC202 4.3 2.0 1.0
C2D A:HEC202 4.3 3.3 1.0
CE A:MET35 4.9 7.6 1.0

Iron binding site 3 out of 6 in 2p0b

Go back to Iron Binding Sites List in 2p0b
Iron binding site 3 out of 6 in the Crystal Structure of Chemically-Reduced E.Coli Nrfb


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Chemically-Reduced E.Coli Nrfb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe203

b:4.9
occ:1.00
FE A:HEC203 0.0 4.9 1.0
NB A:HEC203 2.0 3.0 1.0
NC A:HEC203 2.1 3.8 1.0
NE2 A:HIS39 2.1 5.3 1.0
NA A:HEC203 2.1 3.2 1.0
ND A:HEC203 2.1 4.0 1.0
NE2 A:HIS92 2.1 4.8 1.0
CE1 A:HIS39 3.0 3.9 1.0
CE1 A:HIS92 3.0 3.8 1.0
C1B A:HEC203 3.0 3.3 1.0
C4B A:HEC203 3.0 3.8 1.0
C1A A:HEC203 3.0 3.3 1.0
C4C A:HEC203 3.1 3.1 1.0
C1D A:HEC203 3.1 5.3 1.0
C4D A:HEC203 3.1 4.5 1.0
C1C A:HEC203 3.1 3.0 1.0
C4A A:HEC203 3.1 2.2 1.0
CD2 A:HIS39 3.1 6.7 1.0
CD2 A:HIS92 3.1 4.0 1.0
CHA A:HEC203 3.4 4.5 1.0
CHD A:HEC203 3.4 4.8 1.0
CHB A:HEC203 3.4 3.1 1.0
CHC A:HEC203 3.4 3.2 1.0
ND1 A:HIS39 4.1 4.8 1.0
ND1 A:HIS92 4.2 3.5 1.0
CG A:HIS39 4.2 6.6 1.0
CG A:HIS92 4.2 3.3 1.0
C2B A:HEC203 4.2 3.2 1.0
C3B A:HEC203 4.3 2.0 1.0
C2A A:HEC203 4.3 4.3 1.0
C3C A:HEC203 4.3 2.8 1.0
C2C A:HEC203 4.3 2.4 1.0
C3A A:HEC203 4.3 3.4 1.0
C3D A:HEC203 4.3 8.1 1.0
C2D A:HEC203 4.3 7.2 1.0
CBC A:HEC202 5.0 5.6 1.0

Iron binding site 4 out of 6 in 2p0b

Go back to Iron Binding Sites List in 2p0b
Iron binding site 4 out of 6 in the Crystal Structure of Chemically-Reduced E.Coli Nrfb


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Chemically-Reduced E.Coli Nrfb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe204

b:3.6
occ:1.00
FE A:HEC204 0.0 3.6 1.0
NB A:HEC204 2.0 2.7 1.0
NE2 A:HIS104 2.0 2.1 1.0
NC A:HEC204 2.0 2.0 1.0
NA A:HEC204 2.1 3.8 1.0
NE2 A:HIS117 2.1 3.8 1.0
ND A:HEC204 2.1 2.0 1.0
CD2 A:HIS104 3.0 2.0 1.0
CE1 A:HIS117 3.0 4.1 1.0
C4B A:HEC204 3.0 2.1 1.0
CE1 A:HIS104 3.0 2.6 1.0
C1B A:HEC204 3.0 2.3 1.0
C1C A:HEC204 3.1 3.4 1.0
CD2 A:HIS117 3.1 3.3 1.0
C1A A:HEC204 3.1 4.1 1.0
C4A A:HEC204 3.1 3.1 1.0
C4C A:HEC204 3.1 2.9 1.0
C1D A:HEC204 3.1 2.0 1.0
C4D A:HEC204 3.1 2.8 1.0
CHC A:HEC204 3.4 3.4 1.0
CHB A:HEC204 3.4 4.5 1.0
CHA A:HEC204 3.4 4.6 1.0
CHD A:HEC204 3.4 4.4 1.0
ND1 A:HIS104 4.1 5.3 1.0
ND1 A:HIS117 4.2 2.9 1.0
CG A:HIS104 4.2 3.3 1.0
CG A:HIS117 4.2 2.0 1.0
C3B A:HEC204 4.3 2.8 1.0
C2B A:HEC204 4.3 4.3 1.0
C3A A:HEC204 4.3 4.8 1.0
C2A A:HEC204 4.3 5.0 1.0
C2C A:HEC204 4.3 2.1 1.0
C3C A:HEC204 4.3 3.1 1.0
C3D A:HEC204 4.3 4.1 1.0
C2D A:HEC204 4.3 4.4 1.0
O A:HOH289 4.9 21.6 1.0

Iron binding site 5 out of 6 in 2p0b

Go back to Iron Binding Sites List in 2p0b
Iron binding site 5 out of 6 in the Crystal Structure of Chemically-Reduced E.Coli Nrfb


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Chemically-Reduced E.Coli Nrfb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe205

b:2.8
occ:0.50
FE A:HEC205 0.0 2.8 0.5
FE A:HEC205 0.3 3.9 0.5
ND A:HEC205 1.9 3.3 0.5
NA A:HEC205 2.0 3.4 0.5
NE2 A:HIS142 2.0 2.3 1.0
ND A:HEC205 2.0 2.0 0.5
NC A:HEC205 2.0 2.3 0.5
NB A:HEC205 2.1 2.0 0.5
NA A:HEC205 2.1 2.0 0.5
NE2 A:HIS107 2.1 3.9 1.0
NC A:HEC205 2.2 3.8 0.5
NB A:HEC205 2.2 3.3 0.5
C4D A:HEC205 2.9 4.5 0.5
CE1 A:HIS142 2.9 5.4 1.0
C1A A:HEC205 2.9 3.2 0.5
C1D A:HEC205 2.9 3.5 0.5
C4D A:HEC205 3.0 3.5 0.5
C1A A:HEC205 3.0 2.0 0.5
CE1 A:HIS107 3.0 6.8 1.0
C1D A:HEC205 3.0 2.5 0.5
C1C A:HEC205 3.1 2.0 0.5
C4A A:HEC205 3.1 3.2 0.5
C4B A:HEC205 3.1 2.0 0.5
C4C A:HEC205 3.1 2.2 0.5
CD2 A:HIS107 3.1 6.0 1.0
C1B A:HEC205 3.1 2.0 0.5
CD2 A:HIS142 3.1 3.1 1.0
C4A A:HEC205 3.1 2.0 0.5
C4C A:HEC205 3.1 3.8 0.5
C1B A:HEC205 3.2 3.3 0.5
CHA A:HEC205 3.2 3.9 0.5
C1C A:HEC205 3.2 2.8 0.5
C4B A:HEC205 3.2 3.6 0.5
CHA A:HEC205 3.4 2.1 0.5
CHD A:HEC205 3.4 4.1 0.5
CHC A:HEC205 3.4 2.0 0.5
CHD A:HEC205 3.4 2.6 0.5
CHB A:HEC205 3.5 2.3 0.5
CHB A:HEC205 3.5 3.9 0.5
CHC A:HEC205 3.6 3.0 0.5
ND1 A:HIS142 4.1 4.6 1.0
C3D A:HEC205 4.1 4.3 0.5
C2D A:HEC205 4.1 3.6 0.5
ND1 A:HIS107 4.2 7.8 1.0
CG A:HIS142 4.2 2.2 1.0
C2A A:HEC205 4.2 4.7 0.5
CG A:HIS107 4.2 4.9 1.0
C3D A:HEC205 4.2 2.5 0.5
C3A A:HEC205 4.2 3.7 0.5
C2D A:HEC205 4.3 2.7 0.5
C2A A:HEC205 4.3 3.0 0.5
C2C A:HEC205 4.3 2.0 0.5
C3C A:HEC205 4.3 2.0 0.5
C3B A:HEC205 4.3 2.0 0.5
C3A A:HEC205 4.3 2.0 0.5
C2B A:HEC205 4.3 2.1 0.5
C3C A:HEC205 4.4 2.9 0.5
C2B A:HEC205 4.4 3.4 0.5
C2C A:HEC205 4.4 3.0 0.5
C3B A:HEC205 4.5 3.5 0.5
NE2 A:GLN145 4.8 5.4 1.0

Iron binding site 6 out of 6 in 2p0b

Go back to Iron Binding Sites List in 2p0b
Iron binding site 6 out of 6 in the Crystal Structure of Chemically-Reduced E.Coli Nrfb


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Chemically-Reduced E.Coli Nrfb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe205

b:3.9
occ:0.50
FE A:HEC205 0.0 3.9 0.5
FE A:HEC205 0.3 2.8 0.5
NB A:HEC205 1.8 2.0 0.5
NC A:HEC205 1.9 2.3 0.5
NE2 A:HIS107 1.9 3.9 1.0
NB A:HEC205 2.0 3.3 0.5
NC A:HEC205 2.0 3.8 0.5
ND A:HEC205 2.1 3.3 0.5
NA A:HEC205 2.1 3.4 0.5
NE2 A:HIS142 2.2 2.3 1.0
NA A:HEC205 2.2 2.0 0.5
ND A:HEC205 2.3 2.0 0.5
C4B A:HEC205 2.8 2.0 0.5
CE1 A:HIS107 2.8 6.8 1.0
C1C A:HEC205 2.8 2.0 0.5
C1B A:HEC205 3.0 2.0 0.5
C4B A:HEC205 3.0 3.6 0.5
C1C A:HEC205 3.0 2.8 0.5
CD2 A:HIS107 3.0 6.0 1.0
C4C A:HEC205 3.0 2.2 0.5
C1B A:HEC205 3.0 3.3 0.5
C4C A:HEC205 3.1 3.8 0.5
C1D A:HEC205 3.1 3.5 0.5
C4D A:HEC205 3.1 4.5 0.5
C4A A:HEC205 3.1 3.2 0.5
CHC A:HEC205 3.1 2.0 0.5
CE1 A:HIS142 3.2 5.4 1.0
C1A A:HEC205 3.2 3.2 0.5
CD2 A:HIS142 3.2 3.1 1.0
C4A A:HEC205 3.2 2.0 0.5
C1D A:HEC205 3.2 2.5 0.5
C1A A:HEC205 3.3 2.0 0.5
C4D A:HEC205 3.3 3.5 0.5
CHC A:HEC205 3.3 3.0 0.5
CHD A:HEC205 3.4 4.1 0.5
CHB A:HEC205 3.5 3.9 0.5
CHB A:HEC205 3.5 2.3 0.5
CHD A:HEC205 3.5 2.6 0.5
CHA A:HEC205 3.5 3.9 0.5
CHA A:HEC205 3.7 2.1 0.5
ND1 A:HIS107 4.0 7.8 1.0
C3B A:HEC205 4.0 2.0 0.5
C2C A:HEC205 4.1 2.0 0.5
CG A:HIS107 4.1 4.9 1.0
C2B A:HEC205 4.1 2.1 0.5
C3C A:HEC205 4.2 2.0 0.5
C3B A:HEC205 4.2 3.5 0.5
C2B A:HEC205 4.2 3.4 0.5
C2C A:HEC205 4.2 3.0 0.5
C3C A:HEC205 4.3 2.9 0.5
ND1 A:HIS142 4.3 4.6 1.0
CG A:HIS142 4.3 2.2 1.0
C2D A:HEC205 4.3 3.6 0.5
C3D A:HEC205 4.4 4.3 0.5
C3A A:HEC205 4.4 3.7 0.5
C2A A:HEC205 4.4 4.7 0.5
C3A A:HEC205 4.5 2.0 0.5
C2D A:HEC205 4.5 2.7 0.5
C2A A:HEC205 4.5 3.0 0.5
C3D A:HEC205 4.5 2.5 0.5

Reference:

T.A.Clarke, J.A.Cole, D.J.Richardson, A.M.Hemmings. The Crystal Structure of the Pentahaem C-Type Cytochrome Nrfb and Characterization of Its Solution-State Interaction with the Pentahaem Nitrite Reductase Nrfa. Biochem.J. V. 406 19 2007.
ISSN: ISSN 0264-6021
PubMed: 17521287
DOI: 10.1042/BJ20070321
Page generated: Sun Dec 13 14:50:47 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy