Atomistry » Iron » PDB 2orl-2pg7 » 2p4z
Atomistry »
  Iron »
    PDB 2orl-2pg7 »
      2p4z »

Iron in PDB 2p4z: A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis

Protein crystallography data

The structure of A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis, PDB code: 2p4z was solved by D.-C.Liang, S.-Y.Gu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.10
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.197, 138.310, 52.959, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 21.9

Iron Binding Sites:

The binding sites of Iron atom in the A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis (pdb code 2p4z). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis, PDB code: 2p4z:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 2p4z

Go back to Iron Binding Sites List in 2p4z
Iron binding site 1 out of 4 in the A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1001

b:18.6
occ:0.56
NE2 A:HIS200 2.1 19.9 1.0
ND1 A:HIS78 2.3 20.0 1.0
NE2 A:HIS76 2.3 18.6 1.0
CE1 A:HIS200 2.9 19.8 1.0
CE1 A:HIS78 3.2 21.0 1.0
CD2 A:HIS200 3.2 19.6 1.0
CD2 A:HIS76 3.2 18.5 1.0
CG A:HIS78 3.3 19.3 1.0
CE1 A:HIS76 3.4 17.4 1.0
FE A:FE1002 3.6 15.5 0.3
CB A:HIS78 3.7 18.4 1.0
CB A:CYS198 3.7 26.2 1.0
SG A:CYS198 4.0 30.1 1.0
ND1 A:HIS200 4.1 19.9 1.0
CG A:HIS200 4.3 20.1 1.0
NE2 A:HIS78 4.3 21.4 1.0
NE2 A:HIS81 4.4 20.7 1.0
CD2 A:HIS78 4.4 20.2 1.0
CG A:HIS76 4.4 19.3 1.0
ND1 A:HIS76 4.4 18.8 1.0
CD2 A:HIS81 4.5 18.6 1.0
OD1 A:ASP80 4.6 16.7 1.0
CD2 A:HIS227 4.9 26.8 1.0

Iron binding site 2 out of 4 in 2p4z

Go back to Iron Binding Sites List in 2p4z
Iron binding site 2 out of 4 in the A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1002

b:15.5
occ:0.27
OD2 A:ASP80 2.1 17.8 1.0
NE2 A:HIS81 2.2 20.7 1.0
NE2 A:HIS255 2.3 19.7 1.0
CD2 A:HIS81 3.0 18.6 1.0
CG A:ASP80 3.0 18.1 1.0
CE1 A:HIS255 3.1 20.1 1.0
OD1 A:ASP80 3.4 16.7 1.0
CE1 A:HIS81 3.4 19.5 1.0
CD2 A:HIS255 3.4 19.6 1.0
FE A:FE1001 3.6 18.6 0.6
SG A:CYS198 3.8 30.1 1.0
CB A:CYS198 3.9 26.2 1.0
CG A:HIS81 4.2 17.9 1.0
ND1 A:HIS255 4.3 19.9 1.0
CB A:ASP80 4.3 17.0 1.0
ND1 A:HIS81 4.4 18.8 1.0
CE1 A:HIS32 4.4 19.6 1.0
NE2 A:HIS76 4.4 18.6 1.0
CG A:HIS255 4.5 21.5 1.0
CE1 A:HIS76 4.5 17.4 1.0
NE2 A:HIS32 4.6 21.4 1.0
SG A:CYS256 4.7 25.8 1.0
CB A:CYS256 4.8 21.5 1.0

Iron binding site 3 out of 4 in 2p4z

Go back to Iron Binding Sites List in 2p4z
Iron binding site 3 out of 4 in the A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1003

b:17.9
occ:0.60
NE2 B:HIS200 2.0 20.1 1.0
ND1 B:HIS78 2.3 17.8 1.0
NE2 B:HIS76 2.3 21.1 1.0
CE1 B:HIS200 2.9 20.3 1.0
CD2 B:HIS200 3.1 20.1 1.0
CE1 B:HIS78 3.1 18.5 1.0
CD2 B:HIS76 3.2 22.1 1.0
CG B:HIS78 3.3 18.4 1.0
CE1 B:HIS76 3.3 21.6 1.0
CB B:HIS78 3.7 17.6 1.0
FE B:FE1004 3.7 18.4 0.3
CB B:CYS198 3.8 27.2 1.0
ND1 B:HIS200 4.1 20.8 1.0
SG B:CYS198 4.2 29.7 1.0
CG B:HIS200 4.2 21.7 1.0
NE2 B:HIS78 4.3 18.4 1.0
CD2 B:HIS78 4.4 17.6 1.0
CG B:HIS76 4.4 20.6 1.0
ND1 B:HIS76 4.4 21.6 1.0
NE2 B:HIS81 4.4 15.1 1.0
CD2 B:HIS81 4.6 16.4 1.0
OD1 B:ASP80 4.7 19.9 1.0
CE1 B:PHE178 4.9 25.2 1.0
CD2 B:HIS227 4.9 25.7 1.0

Iron binding site 4 out of 4 in 2p4z

Go back to Iron Binding Sites List in 2p4z
Iron binding site 4 out of 4 in the A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1004

b:18.4
occ:0.27
OD2 B:ASP80 2.0 20.6 1.0
NE2 B:HIS81 2.2 15.1 1.0
NE2 B:HIS255 2.4 20.0 1.0
CD2 B:HIS81 2.9 16.4 1.0
CG B:ASP80 2.9 18.2 1.0
CE1 B:HIS255 3.1 20.8 1.0
OD1 B:ASP80 3.2 19.9 1.0
CE1 B:HIS81 3.4 16.6 1.0
CD2 B:HIS255 3.5 20.9 1.0
FE B:FE1003 3.7 17.9 0.6
CB B:CYS198 4.0 27.2 1.0
SG B:CYS198 4.1 29.7 1.0
CG B:HIS81 4.2 16.9 1.0
CE1 B:HIS32 4.2 17.6 1.0
CB B:ASP80 4.3 17.9 1.0
ND1 B:HIS81 4.3 16.8 1.0
ND1 B:HIS255 4.3 22.0 1.0
NE2 B:HIS76 4.5 21.1 1.0
NE2 B:HIS32 4.5 17.6 1.0
CE1 B:HIS76 4.5 21.6 1.0
CG B:HIS255 4.6 21.4 1.0
CB B:CYS256 4.9 21.9 1.0
SG B:CYS256 5.0 25.4 1.0
CB B:HIS78 5.0 17.6 1.0

Reference:

S.-Y.Gu, X.-X.Yan, D.-C.Liang. Crystal Structure of Tflp: A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis Proteins V. 72 531 2008.
ISSN: ISSN 0887-3585
PubMed: 18431751
DOI: 10.1002/PROT.22069
Page generated: Sun Dec 13 14:50:52 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy