Iron in PDB 2p4z: A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis

The structure of A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis, PDB code: 2p4z was solved by D.-C.Liang, S.-Y.Gu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 2.10
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	77.197, 138.310, 52.959, 90.00, 90.00, 90.00
R / Rfree (%)	20 / 21.9

The binding sites of Iron atom in the A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis (pdb code 2p4z). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis, PDB code: 2p4z:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1001 b:18.6 occ:0.56 NE2 A:HIS200 2.1 19.9 1.0 ND1 A:HIS78 2.3 20.0 1.0 NE2 A:HIS76 2.3 18.6 1.0 CE1 A:HIS200 2.9 19.8 1.0 CE1 A:HIS78 3.2 21.0 1.0 CD2 A:HIS200 3.2 19.6 1.0 CD2 A:HIS76 3.2 18.5 1.0 CG A:HIS78 3.3 19.3 1.0 CE1 A:HIS76 3.4 17.4 1.0 FE A:FE1002 3.6 15.5 0.3 CB A:HIS78 3.7 18.4 1.0 CB A:CYS198 3.7 26.2 1.0 SG A:CYS198 4.0 30.1 1.0 ND1 A:HIS200 4.1 19.9 1.0 CG A:HIS200 4.3 20.1 1.0 NE2 A:HIS78 4.3 21.4 1.0 NE2 A:HIS81 4.4 20.7 1.0 CD2 A:HIS78 4.4 20.2 1.0 CG A:HIS76 4.4 19.3 1.0 ND1 A:HIS76 4.4 18.8 1.0 CD2 A:HIS81 4.5 18.6 1.0 OD1 A:ASP80 4.6 16.7 1.0 CD2 A:HIS227 4.9 26.8 1.0

Iron binding site 2 out of 4 in the A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1002 b:15.5 occ:0.27 OD2 A:ASP80 2.1 17.8 1.0 NE2 A:HIS81 2.2 20.7 1.0 NE2 A:HIS255 2.3 19.7 1.0 CD2 A:HIS81 3.0 18.6 1.0 CG A:ASP80 3.0 18.1 1.0 CE1 A:HIS255 3.1 20.1 1.0 OD1 A:ASP80 3.4 16.7 1.0 CE1 A:HIS81 3.4 19.5 1.0 CD2 A:HIS255 3.4 19.6 1.0 FE A:FE1001 3.6 18.6 0.6 SG A:CYS198 3.8 30.1 1.0 CB A:CYS198 3.9 26.2 1.0 CG A:HIS81 4.2 17.9 1.0 ND1 A:HIS255 4.3 19.9 1.0 CB A:ASP80 4.3 17.0 1.0 ND1 A:HIS81 4.4 18.8 1.0 CE1 A:HIS32 4.4 19.6 1.0 NE2 A:HIS76 4.4 18.6 1.0 CG A:HIS255 4.5 21.5 1.0 CE1 A:HIS76 4.5 17.4 1.0 NE2 A:HIS32 4.6 21.4 1.0 SG A:CYS256 4.7 25.8 1.0 CB A:CYS256 4.8 21.5 1.0

Iron binding site 3 out of 4 in the A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1003 b:17.9 occ:0.60 NE2 B:HIS200 2.0 20.1 1.0 ND1 B:HIS78 2.3 17.8 1.0 NE2 B:HIS76 2.3 21.1 1.0 CE1 B:HIS200 2.9 20.3 1.0 CD2 B:HIS200 3.1 20.1 1.0 CE1 B:HIS78 3.1 18.5 1.0 CD2 B:HIS76 3.2 22.1 1.0 CG B:HIS78 3.3 18.4 1.0 CE1 B:HIS76 3.3 21.6 1.0 CB B:HIS78 3.7 17.6 1.0 FE B:FE1004 3.7 18.4 0.3 CB B:CYS198 3.8 27.2 1.0 ND1 B:HIS200 4.1 20.8 1.0 SG B:CYS198 4.2 29.7 1.0 CG B:HIS200 4.2 21.7 1.0 NE2 B:HIS78 4.3 18.4 1.0 CD2 B:HIS78 4.4 17.6 1.0 CG B:HIS76 4.4 20.6 1.0 ND1 B:HIS76 4.4 21.6 1.0 NE2 B:HIS81 4.4 15.1 1.0 CD2 B:HIS81 4.6 16.4 1.0 OD1 B:ASP80 4.7 19.9 1.0 CE1 B:PHE178 4.9 25.2 1.0 CD2 B:HIS227 4.9 25.7 1.0

Iron binding site 4 out of 4 in the A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1004 b:18.4 occ:0.27 OD2 B:ASP80 2.0 20.6 1.0 NE2 B:HIS81 2.2 15.1 1.0 NE2 B:HIS255 2.4 20.0 1.0 CD2 B:HIS81 2.9 16.4 1.0 CG B:ASP80 2.9 18.2 1.0 CE1 B:HIS255 3.1 20.8 1.0 OD1 B:ASP80 3.2 19.9 1.0 CE1 B:HIS81 3.4 16.6 1.0 CD2 B:HIS255 3.5 20.9 1.0 FE B:FE1003 3.7 17.9 0.6 CB B:CYS198 4.0 27.2 1.0 SG B:CYS198 4.1 29.7 1.0 CG B:HIS81 4.2 16.9 1.0 CE1 B:HIS32 4.2 17.6 1.0 CB B:ASP80 4.3 17.9 1.0 ND1 B:HIS81 4.3 16.8 1.0 ND1 B:HIS255 4.3 22.0 1.0 NE2 B:HIS76 4.5 21.1 1.0 NE2 B:HIS32 4.5 17.6 1.0 CE1 B:HIS76 4.5 21.6 1.0 CG B:HIS255 4.6 21.4 1.0 CB B:CYS256 4.9 21.9 1.0 SG B:CYS256 5.0 25.4 1.0 CB B:HIS78 5.0 17.6 1.0

S.-Y.Gu, X.-X.Yan, D.-C.Liang. Crystal Structure of Tflp: A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis Proteins V. 72 531 2008.
ISSN: ISSN 0887-3585
PubMed: 18431751
DOI: 10.1002/PROT.22069