Iron in PDB 2pg7: Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V
Enzymatic activity of Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V
All present enzymatic activity of Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V:
1.14.14.1;
Protein crystallography data
The structure of Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V, PDB code: 2pg7
was solved by
S.Sansen,
M.H.Hsu,
C.D.Stout,
E.F.Johnson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
40.00 /
2.80
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
70.889,
159.389,
104.101,
90.00,
91.92,
90.00
|
R / Rfree (%)
|
23.5 /
28.9
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V
(pdb code 2pg7). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V, PDB code: 2pg7:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 2pg7
Go back to
Iron Binding Sites List in 2pg7
Iron binding site 1 out
of 4 in the Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe500
b:49.0
occ:1.00
|
FE
|
A:HEM500
|
0.0
|
49.0
|
1.0
|
NC
|
A:HEM500
|
2.0
|
49.0
|
1.0
|
NA
|
A:HEM500
|
2.0
|
49.0
|
1.0
|
ND
|
A:HEM500
|
2.1
|
49.0
|
1.0
|
NB
|
A:HEM500
|
2.1
|
49.0
|
1.0
|
SG
|
A:CYS439
|
2.2
|
40.9
|
1.0
|
C1D
|
A:HEM500
|
3.0
|
49.0
|
1.0
|
C1C
|
A:HEM500
|
3.0
|
49.0
|
1.0
|
C4A
|
A:HEM500
|
3.0
|
49.0
|
1.0
|
C4B
|
A:HEM500
|
3.0
|
49.0
|
1.0
|
C4C
|
A:HEM500
|
3.0
|
49.0
|
1.0
|
C1B
|
A:HEM500
|
3.0
|
49.0
|
1.0
|
C4D
|
A:HEM500
|
3.0
|
49.0
|
1.0
|
C1A
|
A:HEM500
|
3.1
|
49.0
|
1.0
|
CHC
|
A:HEM500
|
3.3
|
49.0
|
1.0
|
CHB
|
A:HEM500
|
3.3
|
49.0
|
1.0
|
CHD
|
A:HEM500
|
3.3
|
49.0
|
1.0
|
CHA
|
A:HEM500
|
3.4
|
49.0
|
1.0
|
CB
|
A:CYS439
|
3.6
|
40.9
|
1.0
|
C2C
|
A:HEM500
|
4.2
|
49.0
|
1.0
|
C2D
|
A:HEM500
|
4.2
|
49.0
|
1.0
|
C3A
|
A:HEM500
|
4.2
|
49.0
|
1.0
|
C3C
|
A:HEM500
|
4.2
|
49.0
|
1.0
|
C2A
|
A:HEM500
|
4.2
|
49.0
|
1.0
|
C3D
|
A:HEM500
|
4.2
|
49.0
|
1.0
|
C3B
|
A:HEM500
|
4.3
|
49.0
|
1.0
|
C2B
|
A:HEM500
|
4.3
|
49.0
|
1.0
|
CA
|
A:CYS439
|
4.4
|
44.7
|
1.0
|
O
|
A:GLY301
|
4.5
|
35.7
|
1.0
|
|
Iron binding site 2 out
of 4 in 2pg7
Go back to
Iron Binding Sites List in 2pg7
Iron binding site 2 out
of 4 in the Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe500
b:49.0
occ:1.00
|
FE
|
B:HEM500
|
0.0
|
49.0
|
1.0
|
NC
|
B:HEM500
|
2.0
|
49.0
|
1.0
|
NA
|
B:HEM500
|
2.0
|
49.0
|
1.0
|
NB
|
B:HEM500
|
2.0
|
49.0
|
1.0
|
ND
|
B:HEM500
|
2.1
|
49.0
|
1.0
|
SG
|
B:CYS439
|
2.2
|
36.7
|
1.0
|
C1C
|
B:HEM500
|
3.0
|
49.0
|
1.0
|
C1D
|
B:HEM500
|
3.0
|
49.0
|
1.0
|
C4B
|
B:HEM500
|
3.0
|
49.0
|
1.0
|
C4A
|
B:HEM500
|
3.0
|
49.0
|
1.0
|
C1B
|
B:HEM500
|
3.0
|
49.0
|
1.0
|
C4C
|
B:HEM500
|
3.0
|
49.0
|
1.0
|
C4D
|
B:HEM500
|
3.0
|
49.0
|
1.0
|
C1A
|
B:HEM500
|
3.1
|
49.0
|
1.0
|
CHC
|
B:HEM500
|
3.3
|
49.0
|
1.0
|
CHB
|
B:HEM500
|
3.3
|
49.0
|
1.0
|
CHD
|
B:HEM500
|
3.3
|
49.0
|
1.0
|
CHA
|
B:HEM500
|
3.4
|
49.0
|
1.0
|
CB
|
B:CYS439
|
3.6
|
36.7
|
1.0
|
C2C
|
B:HEM500
|
4.2
|
49.0
|
1.0
|
C2D
|
B:HEM500
|
4.2
|
49.0
|
1.0
|
C3A
|
B:HEM500
|
4.2
|
49.0
|
1.0
|
C3C
|
B:HEM500
|
4.2
|
49.0
|
1.0
|
C2A
|
B:HEM500
|
4.2
|
49.0
|
1.0
|
C3B
|
B:HEM500
|
4.2
|
49.0
|
1.0
|
C2B
|
B:HEM500
|
4.3
|
49.0
|
1.0
|
C3D
|
B:HEM500
|
4.3
|
49.0
|
1.0
|
O
|
B:GLY301
|
4.4
|
43.0
|
1.0
|
CA
|
B:CYS439
|
4.5
|
33.0
|
1.0
|
|
Iron binding site 3 out
of 4 in 2pg7
Go back to
Iron Binding Sites List in 2pg7
Iron binding site 3 out
of 4 in the Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe500
b:49.0
occ:1.00
|
FE
|
C:HEM500
|
0.0
|
49.0
|
1.0
|
NC
|
C:HEM500
|
2.0
|
49.0
|
1.0
|
NB
|
C:HEM500
|
2.1
|
49.0
|
1.0
|
NA
|
C:HEM500
|
2.1
|
49.0
|
1.0
|
ND
|
C:HEM500
|
2.1
|
49.0
|
1.0
|
SG
|
C:CYS439
|
2.2
|
42.6
|
1.0
|
C1C
|
C:HEM500
|
3.0
|
49.0
|
1.0
|
C1D
|
C:HEM500
|
3.0
|
49.0
|
1.0
|
C4B
|
C:HEM500
|
3.0
|
49.0
|
1.0
|
C4A
|
C:HEM500
|
3.0
|
49.0
|
1.0
|
C4C
|
C:HEM500
|
3.0
|
49.0
|
1.0
|
C1B
|
C:HEM500
|
3.0
|
49.0
|
1.0
|
C4D
|
C:HEM500
|
3.0
|
49.0
|
1.0
|
C1A
|
C:HEM500
|
3.1
|
49.0
|
1.0
|
CHC
|
C:HEM500
|
3.3
|
49.0
|
1.0
|
CHD
|
C:HEM500
|
3.3
|
49.0
|
1.0
|
CHB
|
C:HEM500
|
3.3
|
49.0
|
1.0
|
CHA
|
C:HEM500
|
3.4
|
49.0
|
1.0
|
CB
|
C:CYS439
|
3.5
|
42.6
|
1.0
|
C2C
|
C:HEM500
|
4.2
|
49.0
|
1.0
|
C2D
|
C:HEM500
|
4.2
|
49.0
|
1.0
|
C3C
|
C:HEM500
|
4.2
|
49.0
|
1.0
|
C3A
|
C:HEM500
|
4.2
|
49.0
|
1.0
|
C3D
|
C:HEM500
|
4.3
|
49.0
|
1.0
|
C3B
|
C:HEM500
|
4.3
|
49.0
|
1.0
|
C2A
|
C:HEM500
|
4.3
|
49.0
|
1.0
|
C2B
|
C:HEM500
|
4.3
|
49.0
|
1.0
|
CA
|
C:CYS439
|
4.5
|
51.9
|
1.0
|
O
|
C:GLY301
|
4.7
|
39.1
|
1.0
|
|
Iron binding site 4 out
of 4 in 2pg7
Go back to
Iron Binding Sites List in 2pg7
Iron binding site 4 out
of 4 in the Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Human Microsomal P450 2A6 N297Q/I300V within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe500
b:49.0
occ:1.00
|
FE
|
D:HEM500
|
0.0
|
49.0
|
1.0
|
NC
|
D:HEM500
|
2.0
|
49.0
|
1.0
|
NB
|
D:HEM500
|
2.0
|
49.0
|
1.0
|
NA
|
D:HEM500
|
2.1
|
49.0
|
1.0
|
ND
|
D:HEM500
|
2.1
|
49.0
|
1.0
|
SG
|
D:CYS439
|
2.2
|
33.7
|
1.0
|
C1C
|
D:HEM500
|
3.0
|
49.0
|
1.0
|
C1D
|
D:HEM500
|
3.0
|
49.0
|
1.0
|
C4B
|
D:HEM500
|
3.0
|
49.0
|
1.0
|
C4A
|
D:HEM500
|
3.0
|
49.0
|
1.0
|
C1B
|
D:HEM500
|
3.0
|
49.0
|
1.0
|
C4C
|
D:HEM500
|
3.0
|
49.0
|
1.0
|
C4D
|
D:HEM500
|
3.1
|
49.0
|
1.0
|
C1A
|
D:HEM500
|
3.1
|
49.0
|
1.0
|
CHB
|
D:HEM500
|
3.3
|
49.0
|
1.0
|
CHD
|
D:HEM500
|
3.3
|
49.0
|
1.0
|
CHC
|
D:HEM500
|
3.3
|
49.0
|
1.0
|
CHA
|
D:HEM500
|
3.4
|
49.0
|
1.0
|
CB
|
D:CYS439
|
3.6
|
33.7
|
1.0
|
C2C
|
D:HEM500
|
4.2
|
49.0
|
1.0
|
C2D
|
D:HEM500
|
4.2
|
49.0
|
1.0
|
C3C
|
D:HEM500
|
4.2
|
49.0
|
1.0
|
C3A
|
D:HEM500
|
4.2
|
49.0
|
1.0
|
C2B
|
D:HEM500
|
4.2
|
49.0
|
1.0
|
C3B
|
D:HEM500
|
4.2
|
49.0
|
1.0
|
C3D
|
D:HEM500
|
4.3
|
49.0
|
1.0
|
C2A
|
D:HEM500
|
4.3
|
49.0
|
1.0
|
O
|
D:GLY301
|
4.4
|
33.6
|
1.0
|
CA
|
D:CYS439
|
4.5
|
55.6
|
1.0
|
|
Reference:
S.Sansen,
M.H.Hsu,
C.D.Stout,
E.F.Johnson.
Structural Insight Into the Altered Substrate Specificity of Human Cytochrome P450 2A6 Mutants. Arch.Biochem.Biophys. V. 464 197 2007.
ISSN: ISSN 0003-9861
PubMed: 17540336
DOI: 10.1016/J.ABB.2007.04.028
Page generated: Sun Aug 4 01:18:03 2024
|