Atomistry » Iron » PDB 2pgh-2q9u » 2phd
Atomistry »
  Iron »
    PDB 2pgh-2q9u »
      2phd »

Iron in PDB 2phd: Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans

Enzymatic activity of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans

All present enzymatic activity of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans:
1.13.11.4;

Protein crystallography data

The structure of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans, PDB code: 2phd was solved by I.Matera, M.Ferraroni, F.Briganti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 133.016, 133.016, 190.748, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 26.2

Other elements in 2phd:

The structure of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans (pdb code 2phd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans, PDB code: 2phd:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 2phd

Go back to Iron Binding Sites List in 2phd
Iron binding site 1 out of 4 in the Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe370

b:40.6
occ:1.00
 NE2 A:HIS119 1.9 43.6 1.0
NE2 A:HIS160 2.2 39.8 1.0
NE2 A:HIS121 2.2 38.4 1.0
CE1 A:HIS119 2.8 43.1 1.0
O A:ACT371 2.9 43.1 1.0
CD2 A:HIS119 3.0 43.6 1.0
CE1 A:HIS121 3.1 38.2 1.0
CD2 A:HIS160 3.1 41.1 1.0
CE1 A:HIS160 3.2 40.3 1.0
CD2 A:HIS121 3.3 40.3 1.0
OXT A:ACT371 3.4 42.3 1.0
C A:ACT371 3.6 43.0 1.0
ND1 A:HIS119 4.0 41.5 1.0
CG A:HIS119 4.1 42.2 1.0
ND1 A:HIS121 4.3 39.4 1.0
ND1 A:HIS160 4.3 39.2 1.0
CG A:HIS160 4.3 40.5 1.0
CG A:HIS121 4.4 39.5 1.0
NH2 A:ARG127 4.5 40.3 1.0

Iron binding site 2 out of 4 in 2phd

Go back to Iron Binding Sites List in 2phd
Iron binding site 2 out of 4 in the Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe370

b:41.1
occ:1.00
 NE2 B:HIS119 1.8 40.6 1.0
NE2 B:HIS160 2.0 39.5 1.0
O B:HOH419 2.2 15.1 1.0
NE2 B:HIS121 2.3 36.8 1.0
O D:ACT1 2.5 53.6 1.0
CE1 B:HIS160 2.7 40.4 1.0
CE1 B:HIS119 2.8 42.0 1.0
CD2 B:HIS119 2.8 41.2 1.0
CD2 B:HIS160 3.2 40.0 1.0
CD2 B:HIS121 3.3 39.3 1.0
CE1 B:HIS121 3.3 37.3 1.0
OXT D:ACT1 3.4 54.6 1.0
C D:ACT1 3.4 54.4 1.0
ND1 B:HIS119 3.9 42.0 1.0
ND1 B:HIS160 3.9 39.6 1.0
CG B:HIS119 3.9 41.9 1.0
O B:HOH371 4.1 32.7 1.0
CG B:HIS160 4.2 40.3 1.0
ND1 B:HIS121 4.4 37.6 1.0
CG B:HIS121 4.4 37.9 1.0
NH2 B:ARG127 4.5 45.0 1.0
O B:HOH378 4.7 26.9 1.0
CH3 D:ACT1 4.9 53.5 1.0

Iron binding site 3 out of 4 in 2phd

Go back to Iron Binding Sites List in 2phd
Iron binding site 3 out of 4 in the Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe370

b:35.0
occ:1.00
 NE2 C:HIS160 1.9 38.6 1.0
O C:HOH432 1.9 28.5 1.0
NE2 C:HIS121 2.1 37.3 1.0
NE2 C:HIS119 2.2 43.4 1.0
CE1 C:HIS160 2.9 39.6 1.0
CD2 C:HIS160 2.9 40.2 1.0
CE1 C:HIS121 3.0 36.7 1.0
O C:HOH382 3.0 22.3 1.0
CD2 C:HIS119 3.1 41.5 1.0
CD2 C:HIS121 3.2 38.4 1.0
CE1 C:HIS119 3.3 43.5 1.0
O C:HOH371 3.8 26.4 1.0
ND1 C:HIS160 4.0 39.2 1.0
CG C:HIS160 4.1 40.5 1.0
ND1 C:HIS121 4.2 35.5 1.0
O C:HOH372 4.2 31.6 1.0
CG C:HIS119 4.3 40.1 1.0
CG C:HIS121 4.3 38.3 1.0
ND1 C:HIS119 4.3 40.8 1.0
NH2 C:ARG127 4.6 39.2 1.0
CE A:MET46 4.8 54.1 1.0

Iron binding site 4 out of 4 in 2phd

Go back to Iron Binding Sites List in 2phd
Iron binding site 4 out of 4 in the Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe370

b:31.2
occ:1.00
 NE2 D:HIS119 2.0 42.3 1.0
NE2 D:HIS121 2.1 38.7 1.0
NE2 D:HIS160 2.2 40.2 1.0
O D:HOH374 2.5 23.1 1.0
CE1 D:HIS119 2.9 43.2 1.0
CE1 D:HIS121 3.0 39.0 1.0
CD2 D:HIS119 3.1 40.9 1.0
CE1 D:HIS160 3.1 39.8 1.0
CD2 D:HIS160 3.2 41.3 1.0
CD2 D:HIS121 3.2 39.5 1.0
ND1 D:HIS119 4.1 40.4 1.0
CG D:HIS119 4.2 40.0 1.0
ND1 D:HIS121 4.2 38.0 1.0
ND1 D:HIS160 4.2 39.1 1.0
O D:HOH375 4.3 30.6 1.0
CG D:HIS160 4.3 40.0 1.0
CG D:HIS121 4.3 38.3 1.0
O D:HOH388 4.4 17.5 1.0
NH2 D:ARG127 4.7 39.6 1.0

Reference:

M.Ferraroni, I.Matera, F.Briganti, A.Stolz, S.Burger. Crystal Structure Determination of A Salicylate 1,2-Dioxygenase From Pseudaminobacter Salicylatoxidans To Be Published.
Page generated: Sun Aug 4 01:27:04 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy