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Iron in PDB 2pps: Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only

Protein crystallography data

The structure of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only, PDB code: 2pps was solved by N.Krauss, W.-D.Schubert, O.Klukas, P.Fromme, H.T.Witt, W.Saenger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 4.00
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 286.000, 286.000, 167.000, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Other elements in 2pps:

The structure of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only also contains other interesting chemical elements:

Magnesium (Mg) 89 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only (pdb code 2pps). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only, PDB code: 2pps:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 2pps

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Iron binding site 1 out of 12 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe2008

b:20.0
occ:1.00
 FE1 B:SF42008 0.0 20.0 1.0
S2 B:SF42008 2.2 20.0 1.0
S3 B:SF42008 2.3 20.0 1.0
S4 B:SF42008 2.4 20.0 1.0
FE4 B:SF42008 2.7 20.0 1.0
FE3 B:SF42008 2.7 20.0 1.0
FE2 B:SF42008 2.8 20.0 1.0
CA A:UNK326 3.8 20.0 1.0
S1 B:SF42008 3.9 20.0 1.0
CA B:UNK343 4.6 20.0 1.0

Iron binding site 2 out of 12 in 2pps

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Iron binding site 2 out of 12 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe2008

b:20.0
occ:1.00
 FE2 B:SF42008 0.0 20.0 1.0
S4 B:SF42008 2.2 20.0 1.0
S1 B:SF42008 2.2 20.0 1.0
S3 B:SF42008 2.4 20.0 1.0
CA A:UNK326 2.7 20.0 1.0
FE3 B:SF42008 2.7 20.0 1.0
FE4 B:SF42008 2.7 20.0 1.0
FE1 B:SF42008 2.8 20.0 1.0
S2 B:SF42008 3.7 20.0 1.0
CA A:UNK327 4.4 20.0 1.0
CA B:UNK344 4.6 20.0 1.0

Iron binding site 3 out of 12 in 2pps

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Iron binding site 3 out of 12 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe2008

b:20.0
occ:1.00
 FE3 B:SF42008 0.0 20.0 1.0
S2 B:SF42008 2.1 20.0 1.0
S4 B:SF42008 2.2 20.0 1.0
S1 B:SF42008 2.4 20.0 1.0
FE2 B:SF42008 2.7 20.0 1.0
FE1 B:SF42008 2.7 20.0 1.0
FE4 B:SF42008 2.8 20.0 1.0
CA B:UNK343 2.8 20.0 1.0
CA B:UNK344 3.2 20.0 1.0
S3 B:SF42008 3.8 20.0 1.0
CA A:UNK440 4.3 20.0 1.0
CA A:UNK326 4.6 20.0 1.0

Iron binding site 4 out of 12 in 2pps

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Iron binding site 4 out of 12 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe2008

b:20.0
occ:1.00
 FE4 B:SF42008 0.0 20.0 1.0
S3 B:SF42008 2.1 20.0 1.0
S2 B:SF42008 2.2 20.0 1.0
S1 B:SF42008 2.3 20.0 1.0
FE1 B:SF42008 2.7 20.0 1.0
FE2 B:SF42008 2.7 20.0 1.0
FE3 B:SF42008 2.8 20.0 1.0
S4 B:SF42008 3.8 20.0 1.0
CA B:UNK343 3.9 20.0 1.0
CA B:UNK344 4.1 20.0 1.0

Iron binding site 5 out of 12 in 2pps

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Iron binding site 5 out of 12 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe2009

b:20.0
occ:1.00
 FE1 C:SF42009 0.0 20.0 1.0
S2 C:SF42009 2.2 20.0 1.0
S3 C:SF42009 2.3 20.0 1.0
S4 C:SF42009 2.4 20.0 1.0
FE4 C:SF42009 2.7 20.0 1.0
FE3 C:SF42009 2.7 20.0 1.0
FE2 C:SF42009 2.8 20.0 1.0
CA C:UNK15 3.0 20.0 1.0
S1 C:SF42009 3.9 20.0 1.0
CA C:UNK16 4.3 20.0 1.0
CA C:UNK13 4.7 20.0 1.0
CA C:UNK33 4.9 20.0 1.0

Iron binding site 6 out of 12 in 2pps

Go back to Iron Binding Sites List in 2pps
Iron binding site 6 out of 12 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe2009

b:20.0
occ:1.00
 FE2 C:SF42009 0.0 20.0 1.0
S4 C:SF42009 2.2 20.0 1.0
S1 C:SF42009 2.2 20.0 1.0
S3 C:SF42009 2.4 20.0 1.0
FE3 C:SF42009 2.7 20.0 1.0
FE4 C:SF42009 2.7 20.0 1.0
CA C:UNK16 2.8 20.0 1.0
FE1 C:SF42009 2.8 20.0 1.0
S2 C:SF42009 3.7 20.0 1.0
CA C:UNK15 3.9 20.0 1.0
CA C:UNK17 4.8 20.0 1.0

Iron binding site 7 out of 12 in 2pps

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Iron binding site 7 out of 12 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe2009

b:20.0
occ:1.00
 FE3 C:SF42009 0.0 20.0 1.0
S2 C:SF42009 2.1 20.0 1.0
S4 C:SF42009 2.2 20.0 1.0
S1 C:SF42009 2.4 20.0 1.0
FE2 C:SF42009 2.7 20.0 1.0
FE1 C:SF42009 2.7 20.0 1.0
FE4 C:SF42009 2.8 20.0 1.0
S3 C:SF42009 3.8 20.0 1.0
CA C:UNK60 4.5 20.0 1.0

Iron binding site 8 out of 12 in 2pps

Go back to Iron Binding Sites List in 2pps
Iron binding site 8 out of 12 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe2009

b:20.0
occ:1.00
 FE4 C:SF42009 0.0 20.0 1.0
S3 C:SF42009 2.1 20.0 1.0
S2 C:SF42009 2.2 20.0 1.0
S1 C:SF42009 2.3 20.0 1.0
FE1 C:SF42009 2.7 20.0 1.0
FE2 C:SF42009 2.7 20.0 1.0
FE3 C:SF42009 2.8 20.0 1.0
S4 C:SF42009 3.8 20.0 1.0
CA C:UNK16 4.9 20.0 1.0
CA C:UNK15 4.9 20.0 1.0

Iron binding site 9 out of 12 in 2pps

Go back to Iron Binding Sites List in 2pps
Iron binding site 9 out of 12 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe2010

b:20.0
occ:1.00
 FE1 C:SF42010 0.0 20.0 1.0
S3 C:SF42010 2.0 20.0 1.0
S4 C:SF42010 2.3 20.0 1.0
S2 C:SF42010 2.4 20.0 1.0
FE2 C:SF42010 2.6 20.0 1.0
FE4 C:SF42010 2.7 20.0 1.0
FE3 C:SF42010 2.8 20.0 1.0
CA C:UNK23 3.3 20.0 1.0
S1 C:SF42010 3.9 20.0 1.0

Iron binding site 10 out of 12 in 2pps

Go back to Iron Binding Sites List in 2pps
Iron binding site 10 out of 12 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe2010

b:20.0
occ:1.00
 FE2 C:SF42010 0.0 20.0 1.0
S3 C:SF42010 2.1 20.0 1.0
S1 C:SF42010 2.3 20.0 1.0
S4 C:SF42010 2.3 20.0 1.0
FE3 C:SF42010 2.6 20.0 1.0
FE1 C:SF42010 2.6 20.0 1.0
FE4 C:SF42010 2.7 20.0 1.0
CA C:UNK50 3.5 20.0 1.0
S2 C:SF42010 3.8 20.0 1.0

Reference:

N.Krauss, W.D.Schubert, O.Klukas, P.Fromme, H.T.Witt, W.Saenger. Photosystem I at 4 A Resolution Represents the First Structural Model of A Joint Photosynthetic Reaction Centre and Core Antenna System. Nat.Struct.Biol. V. 3 965 1996.
ISSN: ISSN 1072-8368
PubMed: 8901876
DOI: 10.1038/NSB1196-965
Page generated: Sun Aug 4 01:27:04 2024

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