Atomistry » Iron » PDB 2pgh-2q9u » 2puk
Atomistry »
  Iron »
    PDB 2pgh-2q9u »
      2puk »

Iron in PDB 2puk: Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M

Protein crystallography data

The structure of Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M, PDB code: 2puk was solved by S.Dai, R.Friemann, P.Schurmann, H.Eklund, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 3.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.952, 42.223, 145.344, 90.00, 90.29, 90.00
R / Rfree (%) 23.5 / 28.4

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M (pdb code 2puk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M, PDB code: 2puk:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 2puk

Go back to Iron Binding Sites List in 2puk
Iron binding site 1 out of 8 in the Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1000

b:31.9
occ:1.00
FE1 A:SF41000 0.0 31.9 1.0
S2 A:SF41000 2.1 32.0 1.0
S4 A:SF41000 2.1 31.8 1.0
S3 A:SF41000 2.1 32.0 1.0
SG A:CYS76 2.2 30.7 1.0
FE3 A:SF41000 2.5 32.6 1.0
FE4 A:SF41000 2.5 32.6 1.0
FE2 A:SF41000 2.5 33.0 1.0
CB A:CYS76 3.4 32.1 1.0
S1 A:SF41000 3.6 31.9 1.0
N A:CYS76 3.9 32.5 1.0
CB A:MET79 4.2 32.9 1.0
SG A:CYS55 4.3 37.0 1.0
CA A:CYS76 4.3 32.3 1.0
SG A:CYS85 4.7 32.8 1.0
SG A:CYS74 4.8 33.9 1.0
CA A:CYS85 4.9 33.6 1.0
CB A:CYS55 4.9 37.4 1.0
CB A:CYS85 4.9 33.2 1.0

Iron binding site 2 out of 8 in 2puk

Go back to Iron Binding Sites List in 2puk
Iron binding site 2 out of 8 in the Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1000

b:33.0
occ:1.00
FE2 A:SF41000 0.0 33.0 1.0
S1 A:SF41000 2.1 31.9 1.0
S3 A:SF41000 2.1 32.0 1.0
S4 A:SF41000 2.1 31.8 1.0
SG A:CYS85 2.3 32.8 1.0
FE4 A:SF41000 2.5 32.6 1.0
FE3 A:SF41000 2.5 32.6 1.0
FE1 A:SF41000 2.5 31.9 1.0
CB A:CYS85 3.3 33.2 1.0
S2 A:SF41000 3.6 32.0 1.0
CA A:CYS85 3.7 33.6 1.0
SG A:CYS87 4.2 38.5 1.0
CD1 A:PHE90 4.2 40.2 1.0
C A:CYS85 4.2 34.0 1.0
CB A:CYS87 4.3 37.0 1.0
N A:HIS86 4.3 34.6 1.0
N A:CYS87 4.4 36.1 1.0
CE1 A:PHE90 4.4 40.0 1.0
SG A:CYS76 4.5 30.7 1.0
CB A:LEU89 4.7 38.9 1.0
CB A:MET79 4.9 32.9 1.0
SG A:CYS55 4.9 37.0 1.0
O A:CYS85 5.0 34.1 1.0
CA A:CYS87 5.0 37.0 1.0
SG A:CYS74 5.0 33.9 1.0

Iron binding site 3 out of 8 in 2puk

Go back to Iron Binding Sites List in 2puk
Iron binding site 3 out of 8 in the Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1000

b:32.6
occ:1.00
FE3 A:SF41000 0.0 32.6 1.0
S2 A:SF41000 2.1 32.0 1.0
S4 A:SF41000 2.1 31.8 1.0
S1 A:SF41000 2.1 31.9 1.0
FE1 A:SF41000 2.5 31.9 1.0
FE2 A:SF41000 2.5 33.0 1.0
FE4 A:SF41000 2.5 32.6 1.0
SG A:CYS74 2.6 33.9 1.0
CB A:CYS74 3.4 33.3 1.0
S3 A:SF41000 3.6 32.0 1.0
CE1 A:PHE90 4.0 40.0 1.0
CA A:CYS74 4.1 33.3 1.0
SG A:CYS76 4.4 30.7 1.0
CD1 A:PHE90 4.5 40.2 1.0
CA A:PRO75 4.6 32.8 1.0
SG A:CYS85 4.6 32.8 1.0
N A:CYS76 4.6 32.5 1.0
SG A:CYS55 4.7 37.0 1.0
CD2 A:LEU43 4.8 43.2 1.0
CD2 A:LEU89 5.0 38.6 1.0

Iron binding site 4 out of 8 in 2puk

Go back to Iron Binding Sites List in 2puk
Iron binding site 4 out of 8 in the Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1000

b:32.6
occ:1.00
FE4 A:SF41000 0.0 32.6 1.0
S3 A:SF41000 2.1 32.0 1.0
S2 A:SF41000 2.1 32.0 1.0
S1 A:SF41000 2.1 31.9 1.0
SG A:CYS55 2.5 37.0 1.0
FE2 A:SF41000 2.5 33.0 1.0
FE1 A:SF41000 2.5 31.9 1.0
FE3 A:SF41000 2.5 32.6 1.0
SG A:CYS87 2.9 38.5 1.0
S4 A:SF41000 3.6 31.8 1.0
CB A:CYS55 3.6 37.4 1.0
CB A:CYS87 4.1 37.0 1.0
CA A:CYS55 4.3 37.4 1.0
CD A:PRO56 4.5 37.7 1.0
SG A:CYS76 4.6 30.7 1.0
SG A:CYS85 4.6 32.8 1.0
N A:CYS87 4.7 36.1 1.0
SG A:CYS74 4.8 33.9 1.0

Iron binding site 5 out of 8 in 2puk

Go back to Iron Binding Sites List in 2puk
Iron binding site 5 out of 8 in the Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe1000

b:30.6
occ:1.00
FE1 E:SF41000 0.0 30.6 1.0
S2 E:SF41000 2.1 30.1 1.0
S4 E:SF41000 2.1 29.7 1.0
S3 E:SF41000 2.1 30.1 1.0
SG E:CYS76 2.4 33.3 1.0
FE3 E:SF41000 2.5 29.5 1.0
FE4 E:SF41000 2.5 31.2 1.0
FE2 E:SF41000 2.5 30.6 1.0
CB E:CYS76 3.3 35.1 1.0
S1 E:SF41000 3.6 31.0 1.0
N E:CYS76 3.7 35.3 1.0
CA E:CYS76 4.1 35.4 1.0
CB E:MET79 4.2 39.6 1.0
SG E:CYS55 4.5 40.2 1.0
SG E:CYS85 4.5 43.7 1.0
SG E:CYS74 4.6 35.4 1.0
C E:PRO75 4.8 35.0 1.0
CB E:CYS55 4.9 40.6 1.0
CA E:PRO75 4.9 34.9 1.0
CG E:MET79 4.9 40.1 1.0
CA E:CYS85 4.9 44.3 1.0
C E:CYS76 5.0 36.0 1.0

Iron binding site 6 out of 8 in 2puk

Go back to Iron Binding Sites List in 2puk
Iron binding site 6 out of 8 in the Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe1000

b:30.6
occ:1.00
FE2 E:SF41000 0.0 30.6 1.0
S3 E:SF41000 2.1 30.1 1.0
S1 E:SF41000 2.1 31.0 1.0
S4 E:SF41000 2.1 29.7 1.0
SG E:CYS85 2.2 43.7 1.0
FE3 E:SF41000 2.5 29.5 1.0
FE4 E:SF41000 2.5 31.2 1.0
FE1 E:SF41000 2.5 30.6 1.0
CB E:CYS85 3.4 44.2 1.0
S2 E:SF41000 3.6 30.1 1.0
CA E:CYS85 3.9 44.3 1.0
SG E:CYS87 4.0 47.5 1.0
C E:CYS85 4.3 44.8 1.0
CB E:CYS87 4.3 47.1 1.0
CD1 E:PHE90 4.4 48.5 1.0
N E:CYS87 4.4 46.6 1.0
N E:HIS86 4.4 45.4 1.0
SG E:CYS76 4.7 33.3 1.0
SG E:CYS74 4.7 35.4 1.0
CE1 E:PHE90 4.7 48.3 1.0
CB E:LEU89 4.8 48.6 1.0
CA E:CYS87 5.0 47.0 1.0
SG E:CYS55 5.0 40.2 1.0

Iron binding site 7 out of 8 in 2puk

Go back to Iron Binding Sites List in 2puk
Iron binding site 7 out of 8 in the Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe1000

b:29.5
occ:1.00
FE3 E:SF41000 0.0 29.5 1.0
S4 E:SF41000 2.1 29.7 1.0
S2 E:SF41000 2.1 30.1 1.0
S1 E:SF41000 2.1 31.0 1.0
SG E:CYS74 2.4 35.4 1.0
FE1 E:SF41000 2.5 30.6 1.0
FE2 E:SF41000 2.5 30.6 1.0
FE4 E:SF41000 2.5 31.2 1.0
CB E:CYS74 3.3 34.9 1.0
S3 E:SF41000 3.6 30.1 1.0
CA E:CYS74 3.9 34.8 1.0
CD2 E:LEU43 4.3 48.0 1.0
N E:CYS76 4.5 35.3 1.0
CE1 E:PHE90 4.5 48.3 1.0
CA E:PRO75 4.5 34.9 1.0
SG E:CYS85 4.6 43.7 1.0
SG E:CYS55 4.7 40.2 1.0
SG E:CYS76 4.7 33.3 1.0
CD2 E:LEU89 4.8 48.5 1.0
N E:CYS74 4.9 34.7 1.0
CD1 E:PHE90 4.9 48.5 1.0
SG E:CYS87 4.9 47.5 1.0
C E:CYS74 4.9 34.8 1.0

Iron binding site 8 out of 8 in 2puk

Go back to Iron Binding Sites List in 2puk
Iron binding site 8 out of 8 in the Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of the Binary Complex Between Ferredoxin: Thioredoxin Reductase and Thioredoxin M within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe1000

b:31.2
occ:1.00
FE4 E:SF41000 0.0 31.2 1.0
S1 E:SF41000 2.1 31.0 1.0
S3 E:SF41000 2.1 30.1 1.0
S2 E:SF41000 2.1 30.1 1.0
FE1 E:SF41000 2.5 30.6 1.0
FE2 E:SF41000 2.5 30.6 1.0
FE3 E:SF41000 2.5 29.5 1.0
SG E:CYS55 2.5 40.2 1.0
SG E:CYS87 2.9 47.5 1.0
CB E:CYS55 3.6 40.6 1.0
S4 E:SF41000 3.6 29.7 1.0
CB E:CYS87 4.2 47.1 1.0
CA E:CYS55 4.2 40.8 1.0
CD E:PRO56 4.3 41.3 1.0
SG E:CYS85 4.5 43.7 1.0
SG E:CYS76 4.6 33.3 1.0
N E:CYS87 4.7 46.6 1.0
SG E:CYS74 4.7 35.4 1.0

Reference:

S.Dai, R.Friemann, D.A.Glauser, F.Bourquin, W.Manieri, P.Schurmann, H.Eklund. Structural Snapshots Along the Reaction Pathway of Ferredoxin-Thioredoxin Reductase. Nature V. 448 92 2007.
ISSN: ISSN 0028-0836
PubMed: 17611542
DOI: 10.1038/NATURE05937
Page generated: Sun Dec 13 14:51:24 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy