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Iron in PDB 2qd0: Crystal Structure of Mitoneet

Protein crystallography data

The structure of Crystal Structure of Mitoneet, PDB code: 2qd0 was solved by J.Lin, T.Zhou, K.Ye, J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.92 / 1.81
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.838, 59.139, 65.971, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 19.3

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Mitoneet (pdb code 2qd0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Mitoneet, PDB code: 2qd0:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 2qd0

Go back to Iron Binding Sites List in 2qd0
Iron binding site 1 out of 4 in the Crystal Structure of Mitoneet


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Mitoneet within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe111

b:42.7
occ:1.00
 FE1 A:FES111 0.0 42.7 1.0
ND1 A:HIS87 2.1 46.4 1.0
S2 A:FES111 2.2 45.9 1.0
S1 A:FES111 2.3 37.6 1.0
SG A:CYS83 2.3 50.3 1.0
FE2 A:FES111 2.7 41.2 1.0
CE1 A:HIS87 3.0 42.5 1.0
CG A:HIS87 3.3 45.5 1.0
CB A:CYS83 3.3 51.2 1.0
CB A:HIS87 3.7 46.6 1.0
CA A:CYS83 3.9 50.6 1.0
N A:HIS87 4.0 46.9 1.0
N A:GLY85 4.1 48.2 1.0
NE2 A:HIS87 4.2 42.7 1.0
CD A:PRO100 4.3 48.7 1.0
CB A:PRO100 4.3 48.7 1.0
CD2 A:HIS87 4.3 44.0 1.0
N A:ASP84 4.3 49.8 1.0
N A:ALA86 4.4 47.1 1.0
SG A:CYS74 4.4 47.0 1.0
CA A:HIS87 4.4 46.6 1.0
CA A:GLY85 4.5 47.1 1.0
CG A:PRO100 4.5 48.1 1.0
C A:CYS83 4.5 50.1 1.0
C A:GLY85 4.6 47.0 1.0
CA A:CYS72 4.6 48.4 1.0
SG A:CYS72 4.7 49.3 1.0
N A:PRO100 4.7 49.3 1.0
CB A:CYS72 4.8 47.4 1.0
CA A:PRO100 5.0 49.2 1.0

Iron binding site 2 out of 4 in 2qd0

Go back to Iron Binding Sites List in 2qd0
Iron binding site 2 out of 4 in the Crystal Structure of Mitoneet


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Mitoneet within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe111

b:41.2
occ:1.00
 FE2 A:FES111 0.0 41.2 1.0
S1 A:FES111 2.2 37.6 1.0
S2 A:FES111 2.2 45.9 1.0
SG A:CYS74 2.3 47.0 1.0
SG A:CYS72 2.4 49.3 1.0
FE1 A:FES111 2.7 42.7 1.0
CB A:CYS72 3.4 47.4 1.0
CB A:CYS74 3.4 46.7 1.0
N A:CYS74 3.6 46.5 1.0
CA A:CYS72 3.7 48.4 1.0
N A:ARG73 3.8 47.1 1.0
CA A:CYS74 4.0 46.6 1.0
C A:CYS72 4.2 48.1 1.0
N A:HIS87 4.2 46.9 1.0
CB A:HIS87 4.2 46.6 1.0
ND1 A:HIS87 4.2 46.4 1.0
N A:TRP75 4.3 46.6 1.0
N A:SER77 4.5 50.4 1.0
C A:CYS74 4.5 46.2 1.0
CB A:SER77 4.5 50.9 1.0
CA A:HIS87 4.6 46.6 1.0
C A:ARG73 4.6 46.4 1.0
N A:ARG76 4.7 49.2 1.0
SG A:CYS83 4.7 50.3 1.0
CG A:HIS87 4.7 45.5 1.0
CA A:CYS83 4.8 50.6 1.0
CA A:ARG73 4.9 46.5 1.0
CB A:CYS83 5.0 51.2 1.0
CA A:SER77 5.0 51.1 1.0

Iron binding site 3 out of 4 in 2qd0

Go back to Iron Binding Sites List in 2qd0
Iron binding site 3 out of 4 in the Crystal Structure of Mitoneet


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Mitoneet within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe111

b:34.6
occ:1.00
 FE1 B:FES111 0.0 34.6 1.0
S2 B:FES111 2.2 33.6 1.0
S1 B:FES111 2.2 34.9 1.0
SG B:CYS74 2.3 47.0 1.0
SG B:CYS72 2.4 47.4 1.0
FE2 B:FES111 2.7 35.9 1.0
CB B:CYS72 3.4 47.2 1.0
CB B:CYS74 3.5 45.8 1.0
N B:CYS74 3.5 46.9 1.0
CA B:CYS72 3.7 48.3 1.0
N B:ARG73 3.9 48.2 1.0
CA B:CYS74 4.0 46.6 1.0
CB B:HIS87 4.1 48.4 1.0
ND1 B:HIS87 4.2 48.4 1.0
C B:CYS72 4.2 48.7 1.0
N B:HIS87 4.2 49.8 1.0
N B:TRP75 4.3 46.3 1.0
N B:SER77 4.4 48.5 1.0
CB B:SER77 4.5 48.8 1.0
C B:CYS74 4.5 46.6 1.0
CA B:HIS87 4.6 50.1 1.0
N B:ARG76 4.6 46.4 1.0
C B:ARG73 4.6 47.8 1.0
CG B:HIS87 4.7 48.5 1.0
SG B:CYS83 4.7 48.8 1.0
CA B:CYS83 4.7 47.8 1.0
CA B:ARG73 4.9 47.5 1.0
CB B:CYS83 4.9 47.4 1.0
CA B:SER77 4.9 48.9 1.0

Iron binding site 4 out of 4 in 2qd0

Go back to Iron Binding Sites List in 2qd0
Iron binding site 4 out of 4 in the Crystal Structure of Mitoneet


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Mitoneet within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe111

b:35.9
occ:1.00
 FE2 B:FES111 0.0 35.9 1.0
ND1 B:HIS87 2.1 48.4 1.0
S1 B:FES111 2.2 34.9 1.0
S2 B:FES111 2.2 33.6 1.0
SG B:CYS83 2.3 48.8 1.0
FE1 B:FES111 2.7 34.6 1.0
CE1 B:HIS87 3.0 48.5 1.0
CG B:HIS87 3.2 48.5 1.0
CB B:CYS83 3.4 47.4 1.0
CB B:HIS87 3.7 48.4 1.0
CA B:CYS83 3.8 47.8 1.0
N B:HIS87 4.0 49.8 1.0
N B:GLY85 4.1 47.8 1.0
NE2 B:HIS87 4.1 48.5 1.0
CD2 B:HIS87 4.3 49.2 1.0
CB B:PRO100 4.3 45.1 1.0
CD B:PRO100 4.3 44.1 1.0
N B:ASP84 4.4 48.1 1.0
N B:ALA86 4.4 48.7 1.0
CA B:HIS87 4.4 50.1 1.0
SG B:CYS74 4.5 47.0 1.0
C B:CYS83 4.5 48.0 1.0
CA B:GLY85 4.5 48.0 1.0
CG B:PRO100 4.5 45.7 1.0
C B:GLY85 4.6 48.9 1.0
SG B:CYS72 4.6 47.4 1.0
CA B:CYS72 4.7 48.3 1.0
N B:PRO100 4.7 46.0 1.0
CB B:CYS72 4.8 47.2 1.0
CA B:PRO100 4.9 45.6 1.0

Reference:

J.Lin, T.Zhou, K.Ye, J.Wang. Crystal Structure of Human Mitoneet Reveals Distinct Groups of Iron Sulfur Proteins. Proc.Natl.Acad.Sci.Usa V. 104 14640 2007.
ISSN: ISSN 0027-8424
PubMed: 17766439
DOI: 10.1073/PNAS.0702426104
Page generated: Sun Aug 4 01:41:14 2024

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