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Iron in PDB 2qdy: Crystal Structure of Fe-Type Nhase From Rhodococcus Erythropolis AJ270

Enzymatic activity of Crystal Structure of Fe-Type Nhase From Rhodococcus Erythropolis AJ270

All present enzymatic activity of Crystal Structure of Fe-Type Nhase From Rhodococcus Erythropolis AJ270:
4.2.1.84;

Protein crystallography data

The structure of Crystal Structure of Fe-Type Nhase From Rhodococcus Erythropolis AJ270, PDB code: 2qdy was solved by L.Song, J.Shi, Z.Xue, M.-X.Wang, S.Qian, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.30 / 1.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.064, 60.068, 81.761, 90.00, 125.15, 90.00
R / Rfree (%) 12.9 / 15.7

Other elements in 2qdy:

The structure of Crystal Structure of Fe-Type Nhase From Rhodococcus Erythropolis AJ270 also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms
Chlorine (Cl) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Fe-Type Nhase From Rhodococcus Erythropolis AJ270 (pdb code 2qdy). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Fe-Type Nhase From Rhodococcus Erythropolis AJ270, PDB code: 2qdy:

Iron binding site 1 out of 1 in 2qdy

Go back to Iron Binding Sites List in 2qdy
Iron binding site 1 out of 1 in the Crystal Structure of Fe-Type Nhase From Rhodococcus Erythropolis AJ270


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Fe-Type Nhase From Rhodococcus Erythropolis AJ270 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe300

b:6.3
occ:1.00
 N A:CSD115 2.0 5.3 1.0
N A:SER114 2.0 6.7 1.0
O A:HOH2172 2.1 7.6 1.0
SG A:CSD113 2.2 6.2 1.0
SG A:CSD115 2.2 7.0 1.0
SG A:CYS110 2.2 6.3 1.0
C A:SER114 2.8 5.9 1.0
CA A:SER114 2.9 6.7 1.0
CA A:CSD115 3.0 6.7 1.0
CB A:CSD115 3.1 7.3 1.0
OD1 A:CSD115 3.1 7.4 1.0
C A:CSD113 3.1 5.7 1.0
OD2 A:CSD113 3.1 7.4 1.0
OD1 A:CSD113 3.2 6.7 1.0
CB A:CSD113 3.2 6.4 1.0
OD2 A:CSD115 3.2 8.1 1.0
CB A:CYS110 3.3 6.1 1.0
CA A:CSD113 3.5 5.8 1.0
OG A:SER114 3.8 8.1 1.0
N A:CSD113 3.9 5.5 1.0
CB A:SER114 3.9 6.6 1.0
O A:SER114 4.0 6.5 1.0
O A:CSD113 4.2 6.6 1.0
C A:CSD115 4.3 6.6 1.0
O A:HOH2175 4.5 15.9 0.5
CA A:CYS110 4.7 5.6 1.0
O A:CSD115 4.7 6.9 1.0
O A:CYS110 4.8 6.5 1.0
NH2 B:ARG141 4.8 6.8 1.0
C A:LEU112 4.9 6.2 1.0
O A:THR163 5.0 10.3 1.0

Reference:

L.Song, M.Wang, J.Shi, Z.Xue, M.-X.Wang, S.Qian. High Resolution X-Ray Molecular Structure of the Nitrile Hydratase From Rhodococcus Erythropolis AJ270 Reveals Posttranslational Oxidation of Two Cysteines Into Sulfinic Acids and A Novel Biocatalytic Nitrile Hydration Mechanism Biochem.Biophys.Res.Commun. V. 362 319 2007.
ISSN: ISSN 0006-291X
PubMed: 17716629
DOI: 10.1016/J.BBRC.2007.07.184
Page generated: Sun Aug 4 01:42:41 2024

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