Iron in PDB 2qh7: Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone
Protein crystallography data
The structure of Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone, PDB code: 2qh7
was solved by
M.L.Paddock,
S.E.Wiley,
H.L.Axelrod,
A.E.Cohen,
M.Roy,
E.C.Abresch,
D.Capraro,
A.N.Murphy,
R.Nechushtai,
J.E.Dixon,
P.A.Jennings,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.00 /
1.50
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
46.806,
49.621,
59.006,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.2 /
22.3
|
Iron Binding Sites:
The binding sites of Iron atom in the Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone
(pdb code 2qh7). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone, PDB code: 2qh7:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 2qh7
Go back to
Iron Binding Sites List in 2qh7
Iron binding site 1 out
of 4 in the Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe500
b:35.8
occ:1.00
|
FE1
|
A:FES500
|
0.0
|
35.8
|
1.0
|
SG
|
A:CYS74
|
2.1
|
33.1
|
1.0
|
S1
|
A:FES500
|
2.2
|
37.7
|
1.0
|
S2
|
A:FES500
|
2.2
|
36.3
|
1.0
|
SG
|
A:CYS72
|
2.3
|
35.6
|
1.0
|
FE2
|
A:FES500
|
2.7
|
38.1
|
1.0
|
CB
|
A:CYS72
|
3.3
|
36.6
|
1.0
|
CB
|
A:CYS74
|
3.3
|
36.3
|
1.0
|
N
|
A:CYS74
|
3.5
|
32.7
|
1.0
|
CA
|
A:CYS72
|
3.7
|
35.2
|
1.0
|
N
|
A:ARG73
|
3.9
|
36.1
|
1.0
|
CA
|
A:CYS74
|
3.9
|
35.7
|
1.0
|
CB
|
A:HIS87
|
4.1
|
35.4
|
1.0
|
C
|
A:CYS72
|
4.2
|
37.3
|
1.0
|
N
|
A:HIS87
|
4.2
|
37.0
|
1.0
|
ND1
|
A:HIS87
|
4.3
|
34.1
|
1.0
|
N
|
A:TRP75
|
4.4
|
38.0
|
1.0
|
C
|
A:CYS74
|
4.4
|
36.9
|
1.0
|
N
|
A:SER77
|
4.5
|
36.0
|
1.0
|
CB
|
A:SER77
|
4.5
|
35.0
|
1.0
|
CA
|
A:HIS87
|
4.6
|
37.2
|
1.0
|
N
|
A:ARG76
|
4.6
|
34.8
|
1.0
|
C
|
A:ARG73
|
4.6
|
36.2
|
1.0
|
CG
|
A:HIS87
|
4.7
|
36.4
|
1.0
|
SG
|
A:CYS83
|
4.7
|
37.2
|
1.0
|
CA
|
A:CYS83
|
4.8
|
36.5
|
1.0
|
CA
|
A:ARG73
|
4.9
|
36.2
|
1.0
|
CB
|
A:CYS83
|
4.9
|
36.6
|
1.0
|
CA
|
A:SER77
|
5.0
|
35.3
|
1.0
|
|
Iron binding site 2 out
of 4 in 2qh7
Go back to
Iron Binding Sites List in 2qh7
Iron binding site 2 out
of 4 in the Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe500
b:38.1
occ:1.00
|
FE2
|
A:FES500
|
0.0
|
38.1
|
1.0
|
ND1
|
A:HIS87
|
2.2
|
34.1
|
1.0
|
S1
|
A:FES500
|
2.2
|
37.7
|
1.0
|
S2
|
A:FES500
|
2.2
|
36.3
|
1.0
|
SG
|
A:CYS83
|
2.3
|
37.2
|
1.0
|
FE1
|
A:FES500
|
2.7
|
35.8
|
1.0
|
CE1
|
A:HIS87
|
3.1
|
37.9
|
1.0
|
CG
|
A:HIS87
|
3.2
|
36.4
|
1.0
|
CB
|
A:CYS83
|
3.3
|
36.6
|
1.0
|
CB
|
A:HIS87
|
3.6
|
35.4
|
1.0
|
CA
|
A:CYS83
|
3.9
|
36.5
|
1.0
|
N
|
A:HIS87
|
4.0
|
37.0
|
1.0
|
N
|
A:GLY85
|
4.0
|
39.0
|
1.0
|
NE2
|
A:HIS87
|
4.2
|
36.9
|
1.0
|
CD
|
A:PRO100
|
4.2
|
35.2
|
1.0
|
CB
|
A:PRO100
|
4.3
|
36.2
|
1.0
|
N
|
A:ASP84
|
4.3
|
37.4
|
1.0
|
CD2
|
A:HIS87
|
4.3
|
41.2
|
1.0
|
CA
|
A:GLY85
|
4.3
|
38.2
|
1.0
|
SG
|
A:CYS74
|
4.3
|
33.1
|
1.0
|
N
|
A:ALA86
|
4.4
|
36.8
|
1.0
|
CA
|
A:HIS87
|
4.4
|
37.2
|
1.0
|
CG
|
A:PRO100
|
4.5
|
37.4
|
1.0
|
C
|
A:CYS83
|
4.5
|
37.3
|
1.0
|
C
|
A:GLY85
|
4.6
|
37.4
|
1.0
|
CA
|
A:CYS72
|
4.6
|
35.2
|
1.0
|
SG
|
A:CYS72
|
4.6
|
35.6
|
1.0
|
N
|
A:PRO100
|
4.7
|
36.8
|
1.0
|
CB
|
A:CYS72
|
4.7
|
36.6
|
1.0
|
CA
|
A:PRO100
|
4.9
|
36.1
|
1.0
|
|
Iron binding site 3 out
of 4 in 2qh7
Go back to
Iron Binding Sites List in 2qh7
Iron binding site 3 out
of 4 in the Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe500
b:35.9
occ:1.00
|
FE1
|
B:FES500
|
0.0
|
35.9
|
1.0
|
S1
|
B:FES500
|
2.1
|
36.2
|
1.0
|
S2
|
B:FES500
|
2.1
|
35.7
|
1.0
|
SG
|
B:CYS74
|
2.2
|
34.7
|
1.0
|
SG
|
B:CYS72
|
2.3
|
34.0
|
1.0
|
FE2
|
B:FES500
|
2.7
|
38.1
|
1.0
|
CB
|
B:CYS72
|
3.3
|
33.7
|
1.0
|
CB
|
B:CYS74
|
3.3
|
35.8
|
1.0
|
N
|
B:CYS74
|
3.5
|
31.4
|
1.0
|
CA
|
B:CYS72
|
3.7
|
35.7
|
1.0
|
N
|
B:ARG73
|
3.8
|
29.4
|
1.0
|
CA
|
B:CYS74
|
3.9
|
36.4
|
1.0
|
CB
|
B:HIS87
|
4.1
|
35.3
|
1.0
|
C
|
B:CYS72
|
4.2
|
35.0
|
1.0
|
N
|
B:HIS87
|
4.2
|
39.3
|
1.0
|
ND1
|
B:HIS87
|
4.3
|
35.5
|
1.0
|
N
|
B:TRP75
|
4.3
|
37.8
|
1.0
|
N
|
B:SER77
|
4.4
|
37.6
|
1.0
|
C
|
B:CYS74
|
4.4
|
37.4
|
1.0
|
CB
|
B:SER77
|
4.5
|
34.7
|
1.0
|
N
|
B:ARG76
|
4.6
|
34.0
|
1.0
|
CA
|
B:HIS87
|
4.6
|
36.1
|
1.0
|
CG
|
B:HIS87
|
4.7
|
33.7
|
1.0
|
C
|
B:ARG73
|
4.7
|
32.3
|
1.0
|
SG
|
B:CYS83
|
4.7
|
36.5
|
1.0
|
CA
|
B:CYS83
|
4.8
|
37.6
|
1.0
|
CB
|
B:CYS83
|
4.9
|
38.8
|
1.0
|
CA
|
B:ARG73
|
4.9
|
34.8
|
1.0
|
CA
|
B:SER77
|
4.9
|
35.1
|
1.0
|
N
|
B:CYS72
|
5.0
|
36.6
|
1.0
|
|
Iron binding site 4 out
of 4 in 2qh7
Go back to
Iron Binding Sites List in 2qh7
Iron binding site 4 out
of 4 in the Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe500
b:38.1
occ:1.00
|
FE2
|
B:FES500
|
0.0
|
38.1
|
1.0
|
ND1
|
B:HIS87
|
2.1
|
35.5
|
1.0
|
S2
|
B:FES500
|
2.1
|
35.7
|
1.0
|
S1
|
B:FES500
|
2.2
|
36.2
|
1.0
|
SG
|
B:CYS83
|
2.3
|
36.5
|
1.0
|
FE1
|
B:FES500
|
2.7
|
35.9
|
1.0
|
CE1
|
B:HIS87
|
3.0
|
39.5
|
1.0
|
CG
|
B:HIS87
|
3.2
|
33.7
|
1.0
|
CB
|
B:CYS83
|
3.3
|
38.8
|
1.0
|
CB
|
B:HIS87
|
3.6
|
35.3
|
1.0
|
CA
|
B:CYS83
|
3.9
|
37.6
|
1.0
|
N
|
B:HIS87
|
4.0
|
39.3
|
1.0
|
N
|
B:GLY85
|
4.1
|
39.6
|
1.0
|
CD
|
B:PRO100
|
4.1
|
38.5
|
1.0
|
NE2
|
B:HIS87
|
4.2
|
34.4
|
1.0
|
CD2
|
B:HIS87
|
4.3
|
35.3
|
1.0
|
CB
|
B:PRO100
|
4.3
|
38.9
|
1.0
|
SG
|
B:CYS74
|
4.4
|
34.7
|
1.0
|
N
|
B:ASP84
|
4.4
|
37.2
|
1.0
|
CA
|
B:GLY85
|
4.4
|
38.8
|
1.0
|
CG
|
B:PRO100
|
4.4
|
38.2
|
1.0
|
CA
|
B:HIS87
|
4.4
|
36.1
|
1.0
|
N
|
B:ALA86
|
4.5
|
39.7
|
1.0
|
C
|
B:CYS83
|
4.5
|
39.0
|
1.0
|
CA
|
B:CYS72
|
4.6
|
35.7
|
1.0
|
SG
|
B:CYS72
|
4.6
|
34.0
|
1.0
|
N
|
B:PRO100
|
4.6
|
36.8
|
1.0
|
C
|
B:GLY85
|
4.6
|
41.1
|
1.0
|
CB
|
B:CYS72
|
4.7
|
33.7
|
1.0
|
CA
|
B:PRO100
|
4.9
|
35.7
|
1.0
|
|
Reference:
M.L.Paddock,
S.E.Wiley,
H.L.Axelrod,
A.E.Cohen,
M.Roy,
E.C.Abresch,
D.Capraro,
A.N.Murphy,
R.Nechushtai,
J.E.Dixon,
P.A.Jennings.
Mitoneet Is A Uniquely Folded 2FE 2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone. Proc.Natl.Acad.Sci.Usa V. 104 14342 2007.
ISSN: ISSN 0027-8424
PubMed: 17766440
DOI: 10.1073/PNAS.0707189104
Page generated: Sun Aug 4 01:45:13 2024
|