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Iron in PDB 2qh7: Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone

Protein crystallography data

The structure of Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone, PDB code: 2qh7 was solved by M.L.Paddock, S.E.Wiley, H.L.Axelrod, A.E.Cohen, M.Roy, E.C.Abresch, D.Capraro, A.N.Murphy, R.Nechushtai, J.E.Dixon, P.A.Jennings, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.00 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.806, 49.621, 59.006, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 22.3

Iron Binding Sites:

The binding sites of Iron atom in the Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone (pdb code 2qh7). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone, PDB code: 2qh7:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 2qh7

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Iron binding site 1 out of 4 in the Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:35.8
occ:1.00
FE1 A:FES500 0.0 35.8 1.0
SG A:CYS74 2.1 33.1 1.0
S1 A:FES500 2.2 37.7 1.0
S2 A:FES500 2.2 36.3 1.0
SG A:CYS72 2.3 35.6 1.0
FE2 A:FES500 2.7 38.1 1.0
CB A:CYS72 3.3 36.6 1.0
CB A:CYS74 3.3 36.3 1.0
N A:CYS74 3.5 32.7 1.0
CA A:CYS72 3.7 35.2 1.0
N A:ARG73 3.9 36.1 1.0
CA A:CYS74 3.9 35.7 1.0
CB A:HIS87 4.1 35.4 1.0
C A:CYS72 4.2 37.3 1.0
N A:HIS87 4.2 37.0 1.0
ND1 A:HIS87 4.3 34.1 1.0
N A:TRP75 4.4 38.0 1.0
C A:CYS74 4.4 36.9 1.0
N A:SER77 4.5 36.0 1.0
CB A:SER77 4.5 35.0 1.0
CA A:HIS87 4.6 37.2 1.0
N A:ARG76 4.6 34.8 1.0
C A:ARG73 4.6 36.2 1.0
CG A:HIS87 4.7 36.4 1.0
SG A:CYS83 4.7 37.2 1.0
CA A:CYS83 4.8 36.5 1.0
CA A:ARG73 4.9 36.2 1.0
CB A:CYS83 4.9 36.6 1.0
CA A:SER77 5.0 35.3 1.0

Iron binding site 2 out of 4 in 2qh7

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Iron binding site 2 out of 4 in the Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:38.1
occ:1.00
FE2 A:FES500 0.0 38.1 1.0
ND1 A:HIS87 2.2 34.1 1.0
S1 A:FES500 2.2 37.7 1.0
S2 A:FES500 2.2 36.3 1.0
SG A:CYS83 2.3 37.2 1.0
FE1 A:FES500 2.7 35.8 1.0
CE1 A:HIS87 3.1 37.9 1.0
CG A:HIS87 3.2 36.4 1.0
CB A:CYS83 3.3 36.6 1.0
CB A:HIS87 3.6 35.4 1.0
CA A:CYS83 3.9 36.5 1.0
N A:HIS87 4.0 37.0 1.0
N A:GLY85 4.0 39.0 1.0
NE2 A:HIS87 4.2 36.9 1.0
CD A:PRO100 4.2 35.2 1.0
CB A:PRO100 4.3 36.2 1.0
N A:ASP84 4.3 37.4 1.0
CD2 A:HIS87 4.3 41.2 1.0
CA A:GLY85 4.3 38.2 1.0
SG A:CYS74 4.3 33.1 1.0
N A:ALA86 4.4 36.8 1.0
CA A:HIS87 4.4 37.2 1.0
CG A:PRO100 4.5 37.4 1.0
C A:CYS83 4.5 37.3 1.0
C A:GLY85 4.6 37.4 1.0
CA A:CYS72 4.6 35.2 1.0
SG A:CYS72 4.6 35.6 1.0
N A:PRO100 4.7 36.8 1.0
CB A:CYS72 4.7 36.6 1.0
CA A:PRO100 4.9 36.1 1.0

Iron binding site 3 out of 4 in 2qh7

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Iron binding site 3 out of 4 in the Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe500

b:35.9
occ:1.00
FE1 B:FES500 0.0 35.9 1.0
S1 B:FES500 2.1 36.2 1.0
S2 B:FES500 2.1 35.7 1.0
SG B:CYS74 2.2 34.7 1.0
SG B:CYS72 2.3 34.0 1.0
FE2 B:FES500 2.7 38.1 1.0
CB B:CYS72 3.3 33.7 1.0
CB B:CYS74 3.3 35.8 1.0
N B:CYS74 3.5 31.4 1.0
CA B:CYS72 3.7 35.7 1.0
N B:ARG73 3.8 29.4 1.0
CA B:CYS74 3.9 36.4 1.0
CB B:HIS87 4.1 35.3 1.0
C B:CYS72 4.2 35.0 1.0
N B:HIS87 4.2 39.3 1.0
ND1 B:HIS87 4.3 35.5 1.0
N B:TRP75 4.3 37.8 1.0
N B:SER77 4.4 37.6 1.0
C B:CYS74 4.4 37.4 1.0
CB B:SER77 4.5 34.7 1.0
N B:ARG76 4.6 34.0 1.0
CA B:HIS87 4.6 36.1 1.0
CG B:HIS87 4.7 33.7 1.0
C B:ARG73 4.7 32.3 1.0
SG B:CYS83 4.7 36.5 1.0
CA B:CYS83 4.8 37.6 1.0
CB B:CYS83 4.9 38.8 1.0
CA B:ARG73 4.9 34.8 1.0
CA B:SER77 4.9 35.1 1.0
N B:CYS72 5.0 36.6 1.0

Iron binding site 4 out of 4 in 2qh7

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Iron binding site 4 out of 4 in the Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Mitoneet Is A Uniquely Folded 2FE-2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe500

b:38.1
occ:1.00
FE2 B:FES500 0.0 38.1 1.0
ND1 B:HIS87 2.1 35.5 1.0
S2 B:FES500 2.1 35.7 1.0
S1 B:FES500 2.2 36.2 1.0
SG B:CYS83 2.3 36.5 1.0
FE1 B:FES500 2.7 35.9 1.0
CE1 B:HIS87 3.0 39.5 1.0
CG B:HIS87 3.2 33.7 1.0
CB B:CYS83 3.3 38.8 1.0
CB B:HIS87 3.6 35.3 1.0
CA B:CYS83 3.9 37.6 1.0
N B:HIS87 4.0 39.3 1.0
N B:GLY85 4.1 39.6 1.0
CD B:PRO100 4.1 38.5 1.0
NE2 B:HIS87 4.2 34.4 1.0
CD2 B:HIS87 4.3 35.3 1.0
CB B:PRO100 4.3 38.9 1.0
SG B:CYS74 4.4 34.7 1.0
N B:ASP84 4.4 37.2 1.0
CA B:GLY85 4.4 38.8 1.0
CG B:PRO100 4.4 38.2 1.0
CA B:HIS87 4.4 36.1 1.0
N B:ALA86 4.5 39.7 1.0
C B:CYS83 4.5 39.0 1.0
CA B:CYS72 4.6 35.7 1.0
SG B:CYS72 4.6 34.0 1.0
N B:PRO100 4.6 36.8 1.0
C B:GLY85 4.6 41.1 1.0
CB B:CYS72 4.7 33.7 1.0
CA B:PRO100 4.9 35.7 1.0

Reference:

M.L.Paddock, S.E.Wiley, H.L.Axelrod, A.E.Cohen, M.Roy, E.C.Abresch, D.Capraro, A.N.Murphy, R.Nechushtai, J.E.Dixon, P.A.Jennings. Mitoneet Is A Uniquely Folded 2FE 2S Outer Mitochondrial Membrane Protein Stabilized By Pioglitazone. Proc.Natl.Acad.Sci.Usa V. 104 14342 2007.
ISSN: ISSN 0027-8424
PubMed: 17766440
DOI: 10.1073/PNAS.0707189104
Page generated: Sun Dec 13 14:51:58 2020

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