Atomistry » Iron » PDB 2qbl-2r1l » 2qpe
Atomistry »
  Iron »
    PDB 2qbl-2r1l »
      2qpe »

Iron in PDB 2qpe: An Unexpected Outcome of Surface-Engineering An Integral Membrane Protein: Improved Crystallization of Cytochrome BA3 Oxidase From Thermus Thermophilus

Enzymatic activity of An Unexpected Outcome of Surface-Engineering An Integral Membrane Protein: Improved Crystallization of Cytochrome BA3 Oxidase From Thermus Thermophilus

All present enzymatic activity of An Unexpected Outcome of Surface-Engineering An Integral Membrane Protein: Improved Crystallization of Cytochrome BA3 Oxidase From Thermus Thermophilus:
1.9.3.1;

Protein crystallography data

The structure of An Unexpected Outcome of Surface-Engineering An Integral Membrane Protein: Improved Crystallization of Cytochrome BA3 Oxidase From Thermus Thermophilus, PDB code: 2qpe was solved by B.Liu, V.M.Luna, Y.Chen, C.D.Stout, J.A.Fee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.99 / 2.90
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 114.635, 114.635, 148.568, 90.00, 90.00, 90.00
R / Rfree (%) 23.4 / 30.2

Other elements in 2qpe:

The structure of An Unexpected Outcome of Surface-Engineering An Integral Membrane Protein: Improved Crystallization of Cytochrome BA3 Oxidase From Thermus Thermophilus also contains other interesting chemical elements:

Copper (Cu) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the An Unexpected Outcome of Surface-Engineering An Integral Membrane Protein: Improved Crystallization of Cytochrome BA3 Oxidase From Thermus Thermophilus (pdb code 2qpe). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the An Unexpected Outcome of Surface-Engineering An Integral Membrane Protein: Improved Crystallization of Cytochrome BA3 Oxidase From Thermus Thermophilus, PDB code: 2qpe:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2qpe

Go back to Iron Binding Sites List in 2qpe
Iron binding site 1 out of 2 in the An Unexpected Outcome of Surface-Engineering An Integral Membrane Protein: Improved Crystallization of Cytochrome BA3 Oxidase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of An Unexpected Outcome of Surface-Engineering An Integral Membrane Protein: Improved Crystallization of Cytochrome BA3 Oxidase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe800

b:80.2
occ:1.00
FE A:HEM800 0.0 80.2 1.0
NC A:HEM800 2.0 71.5 1.0
NA A:HEM800 2.0 57.1 1.0
NB A:HEM800 2.0 66.2 1.0
ND A:HEM800 2.0 65.6 1.0
NE2 A:HIS72 2.2 91.5 1.0
NE2 A:HIS386 2.2 79.5 1.0
CE1 A:HIS72 3.0 91.0 1.0
C4B A:HEM800 3.0 66.8 1.0
C1A A:HEM800 3.0 62.8 1.0
C1C A:HEM800 3.0 68.5 1.0
C4C A:HEM800 3.0 80.0 1.0
C4D A:HEM800 3.0 66.4 1.0
C4A A:HEM800 3.1 62.9 1.0
C1B A:HEM800 3.1 83.1 1.0
C1D A:HEM800 3.1 72.4 1.0
CE1 A:HIS386 3.1 82.0 1.0
CD2 A:HIS386 3.2 81.9 1.0
CD2 A:HIS72 3.2 75.5 1.0
CHC A:HEM800 3.3 71.0 1.0
CHA A:HEM800 3.4 56.9 1.0
CHB A:HEM800 3.5 75.3 1.0
CHD A:HEM800 3.5 65.2 1.0
ND1 A:HIS72 4.2 89.7 1.0
ND1 A:HIS386 4.2 87.7 1.0
C3C A:HEM800 4.2 69.0 1.0
C2C A:HEM800 4.3 57.1 1.0
C3B A:HEM800 4.3 78.0 1.0
C2A A:HEM800 4.3 50.8 1.0
CG A:HIS386 4.3 82.6 1.0
C3D A:HEM800 4.3 68.1 1.0
CG A:HIS72 4.3 84.7 1.0
C3A A:HEM800 4.3 68.4 1.0
C2B A:HEM800 4.3 85.6 1.0
C2D A:HEM800 4.3 70.7 1.0
NE2 A:GLN42 4.8 83.1 1.0
CE1 A:PHE385 4.9 82.1 1.0

Iron binding site 2 out of 2 in 2qpe

Go back to Iron Binding Sites List in 2qpe
Iron binding site 2 out of 2 in the An Unexpected Outcome of Surface-Engineering An Integral Membrane Protein: Improved Crystallization of Cytochrome BA3 Oxidase From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of An Unexpected Outcome of Surface-Engineering An Integral Membrane Protein: Improved Crystallization of Cytochrome BA3 Oxidase From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe801

b:77.5
occ:1.00
FE A:HAS801 0.0 77.5 1.0
NA A:HAS801 1.9 83.2 1.0
ND A:HAS801 2.1 76.7 1.0
NC A:HAS801 2.1 72.2 1.0
NE2 A:HIS384 2.1 87.4 1.0
NB A:HAS801 2.1 73.8 1.0
C1A A:HAS801 2.9 75.1 1.0
C4A A:HAS801 2.9 75.5 1.0
CE1 A:HIS384 3.0 84.2 1.0
C4D A:HAS801 3.1 80.4 1.0
C1D A:HAS801 3.1 87.0 1.0
C4C A:HAS801 3.1 78.1 1.0
C1C A:HAS801 3.1 72.1 1.0
C1B A:HAS801 3.2 71.0 1.0
C4B A:HAS801 3.2 76.1 1.0
CD2 A:HIS384 3.2 86.8 1.0
CHA A:HAS801 3.5 70.3 1.0
CHD A:HAS801 3.5 71.1 1.0
CHB A:HAS801 3.6 75.5 1.0
CHC A:HAS801 3.7 73.4 1.0
ND1 A:HIS384 4.2 92.0 1.0
C2A A:HAS801 4.2 75.0 1.0
C3C A:HAS801 4.2 87.5 1.0
CG A:HIS384 4.3 71.0 1.0
C3A A:HAS801 4.3 71.9 1.0
C2D A:HAS801 4.3 73.7 1.0
C3D A:HAS801 4.3 74.9 1.0
C2B A:HAS801 4.4 73.5 1.0
C3B A:HAS801 4.4 70.7 1.0
C2C A:HAS801 4.5 79.4 1.0
CU A:CU1803 4.6 84.0 1.0
ND2 A:ASN366 5.0 96.3 1.0

Reference:

B.Liu, V.M.Luna, Y.Chen, C.D.Stout, J.A.Fee. An Unexpected Outcome of Surface Engineering An Integral Membrane Protein: Improved Crystallization of Cytochrome Ba(3) From Thermus Thermophilus. Acta Crystallogr.,Sect.F V. 63 1029 2007.
ISSN: ESSN 1744-3091
PubMed: 18084085
DOI: 10.1107/S1744309107054176
Page generated: Sun Dec 13 14:52:11 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy