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Iron in PDB 2r13: Crystal Structure of Human Mitoneet Reveals A Novel [2FE-2S] Cluster Coordination

Protein crystallography data

The structure of Crystal Structure of Human Mitoneet Reveals A Novel [2FE-2S] Cluster Coordination, PDB code: 2r13 was solved by X.Hou, R.Liu, S.Ross, E.J.Smart, H.Zhu, W.Gong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.80
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 58.794, 58.794, 175.306, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 18.8

Other elements in 2r13:

The structure of Crystal Structure of Human Mitoneet Reveals A Novel [2FE-2S] Cluster Coordination also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Human Mitoneet Reveals A Novel [2FE-2S] Cluster Coordination (pdb code 2r13). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Human Mitoneet Reveals A Novel [2FE-2S] Cluster Coordination, PDB code: 2r13:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2r13

Go back to Iron Binding Sites List in 2r13
Iron binding site 1 out of 2 in the Crystal Structure of Human Mitoneet Reveals A Novel [2FE-2S] Cluster Coordination


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Human Mitoneet Reveals A Novel [2FE-2S] Cluster Coordination within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe204

b:18.3
occ:1.00
FE1 A:FES204 0.0 18.3 1.0
S2 A:FES204 2.2 20.1 1.0
S1 A:FES204 2.2 18.9 1.0
SG A:CYS74 2.3 17.8 1.0
SG A:CYS72 2.3 18.0 1.0
FE2 A:FES204 2.7 19.9 1.0
CB A:CYS74 3.4 17.0 1.0
CB A:CYS72 3.4 17.4 1.0
N A:CYS74 3.6 16.0 1.0
CA A:CYS72 3.8 17.4 1.0
N A:ARG73 3.9 15.8 1.0
CA A:CYS74 3.9 16.4 1.0
CB A:HIS87 4.1 20.1 1.0
ND1 A:HIS87 4.2 19.2 1.0
C A:CYS72 4.2 17.2 1.0
N A:HIS87 4.3 20.3 1.0
N A:TRP75 4.3 16.2 1.0
C A:CYS74 4.4 16.1 1.0
CB A:SER77 4.5 20.6 1.0
N A:SER77 4.5 19.4 1.0
CA A:HIS87 4.6 20.3 1.0
N A:ARG76 4.6 17.1 1.0
CG A:HIS87 4.6 20.2 1.0
C A:ARG73 4.7 15.9 1.0
SG A:CYS83 4.7 21.7 1.0
CB A:CYS83 4.8 21.4 1.0
CA A:CYS83 4.8 21.8 1.0
CA A:ARG73 4.9 16.0 1.0
CA A:SER77 5.0 20.5 1.0

Iron binding site 2 out of 2 in 2r13

Go back to Iron Binding Sites List in 2r13
Iron binding site 2 out of 2 in the Crystal Structure of Human Mitoneet Reveals A Novel [2FE-2S] Cluster Coordination


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Human Mitoneet Reveals A Novel [2FE-2S] Cluster Coordination within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe204

b:19.9
occ:1.00
FE2 A:FES204 0.0 19.9 1.0
ND1 A:HIS87 2.0 19.2 1.0
S2 A:FES204 2.2 20.1 1.0
S1 A:FES204 2.2 18.9 1.0
SG A:CYS83 2.3 21.7 1.0
FE1 A:FES204 2.7 18.3 1.0
CE1 A:HIS87 2.9 21.5 1.0
CG A:HIS87 3.1 20.2 1.0
CB A:CYS83 3.3 21.4 1.0
CB A:HIS87 3.6 20.1 1.0
CA A:CYS83 3.9 21.8 1.0
N A:HIS87 4.0 20.3 1.0
N A:GLY85 4.0 22.4 1.0
NE2 A:HIS87 4.0 21.4 1.0
CD2 A:HIS87 4.2 22.1 1.0
CD A:PRO100 4.2 18.3 1.0
CA A:GLY85 4.3 22.2 1.0
CB A:PRO100 4.3 18.2 1.0
N A:ASP84 4.3 22.1 1.0
CA A:HIS87 4.4 20.3 1.0
CG A:PRO100 4.4 18.6 1.0
SG A:CYS74 4.5 17.8 1.0
N A:ALA86 4.5 21.1 1.0
C A:CYS83 4.5 22.5 1.0
C A:GLY85 4.5 22.1 1.0
SG A:CYS72 4.7 18.0 1.0
N A:PRO100 4.7 18.5 1.0
CA A:CYS72 4.7 17.4 1.0
CB A:CYS72 4.8 17.4 1.0
CA A:PRO100 4.9 18.7 1.0

Reference:

X.Hou, R.Liu, S.Ross, E.J.Smart, H.Zhu, W.Gong. Crystallographic Studies of Human Mitoneet J.Biol.Chem. V. 282 33242 2007.
ISSN: ISSN 0021-9258
PubMed: 17905743
DOI: 10.1074/JBC.C700172200
Page generated: Sun Dec 13 14:52:17 2020

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