Atomistry » Iron » PDB 2r1m-2rfb » 2rds
Atomistry »
  Iron »
    PDB 2r1m-2rfb »
      2rds »

Iron in PDB 2rds: Crystal Structure of Ptlh with Fe/Oxalylglycine and Ent-1- Deoxypentalenic Acid Bound

Protein crystallography data

The structure of Crystal Structure of Ptlh with Fe/Oxalylglycine and Ent-1- Deoxypentalenic Acid Bound, PDB code: 2rds was solved by Z.You, S.Omura, H.Ikeda, D.E.Cane, G.Jogl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.65
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 69.951, 89.387, 48.770, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 20.9

Other elements in 2rds:

The structure of Crystal Structure of Ptlh with Fe/Oxalylglycine and Ent-1- Deoxypentalenic Acid Bound also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Ptlh with Fe/Oxalylglycine and Ent-1- Deoxypentalenic Acid Bound (pdb code 2rds). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Ptlh with Fe/Oxalylglycine and Ent-1- Deoxypentalenic Acid Bound, PDB code: 2rds:

Iron binding site 1 out of 1 in 2rds

Go back to Iron Binding Sites List in 2rds
Iron binding site 1 out of 1 in the Crystal Structure of Ptlh with Fe/Oxalylglycine and Ent-1- Deoxypentalenic Acid Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Ptlh with Fe/Oxalylglycine and Ent-1- Deoxypentalenic Acid Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1

b:25.0
occ:1.00
O2 A:OGA268 2.1 10.1 1.0
OD1 A:ASP139 2.1 12.2 1.0
O A:HOH270 2.1 11.4 1.0
O2' A:OGA268 2.2 9.6 1.0
NE2 A:HIS137 2.2 11.5 1.0
NE2 A:HIS226 2.2 12.3 1.0
C1 A:OGA268 2.8 11.1 1.0
C2 A:OGA268 2.9 10.2 1.0
CE1 A:HIS226 3.1 13.1 1.0
CE1 A:HIS137 3.1 13.7 1.0
CG A:ASP139 3.1 13.1 1.0
CD2 A:HIS137 3.3 12.2 1.0
CD2 A:HIS226 3.3 12.9 1.0
OD2 A:ASP139 3.4 12.6 1.0
O1 A:OGA268 4.1 10.9 1.0
NH1 A:ARG246 4.1 13.6 1.0
N1 A:OGA268 4.2 9.8 1.0
ND1 A:HIS137 4.2 12.6 1.0
ND1 A:HIS226 4.2 12.2 1.0
OH A:TYR142 4.3 17.4 0.5
C12 A:1PL269 4.3 35.9 1.0
CG A:HIS137 4.3 12.2 1.0
CG A:HIS226 4.4 12.1 1.0
O2 A:1PL269 4.4 32.3 1.0
CB A:ASP139 4.5 12.3 1.0
CE2 A:TYR142 4.7 17.2 0.5
CE1 A:PHE220 4.8 13.3 1.0
CA A:ASP139 4.8 13.0 1.0
CZ A:PHE220 4.9 13.4 1.0
N A:ASP139 4.9 12.8 1.0
C4 A:OGA268 5.0 11.3 1.0

Reference:

Z.You, S.Omura, H.Ikeda, D.E.Cane, G.Jogl. Crystal Structure of the Non-Heme Iron Dioxygenase Ptlh in Pentalenolactone Biosynthesis. J.Biol.Chem. V. 282 36552 2007.
ISSN: ISSN 0021-9258
PubMed: 17942405
DOI: 10.1074/JBC.M706358200
Page generated: Sun Dec 13 14:52:44 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy