Iron in PDB 2rdz: High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase.
Enzymatic activity of High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase.
All present enzymatic activity of High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase.:
1.7.2.2;
Protein crystallography data
The structure of High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase., PDB code: 2rdz
was solved by
T.A.Clarke,
A.M.Hemmings,
D.J.Richardson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.65 /
1.74
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
90.460,
79.300,
137.580,
90.00,
101.57,
90.00
|
R / Rfree (%)
|
15.4 /
18.9
|
Other elements in 2rdz:
The structure of High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase. also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Binding sites:
The binding sites of Iron atom in the High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase.
(pdb code 2rdz). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 20 binding sites of Iron where determined in the
High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase., PDB code: 2rdz:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 20 in 2rdz
Go back to
Iron Binding Sites List in 2rdz
Iron binding site 1 out
of 20 in the High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1
b:10.5
occ:1.00
|
FE
|
A:HEC1
|
0.0
|
10.5
|
1.0
|
NA
|
A:HEC1
|
2.0
|
8.5
|
1.0
|
NC
|
A:HEC1
|
2.1
|
8.7
|
1.0
|
NB
|
A:HEC1
|
2.1
|
10.7
|
1.0
|
ND
|
A:HEC1
|
2.1
|
9.3
|
1.0
|
NZ
|
A:LYS126
|
2.1
|
11.9
|
1.0
|
O
|
A:HOH563
|
2.3
|
13.2
|
1.0
|
C1A
|
A:HEC1
|
3.0
|
9.7
|
1.0
|
C4B
|
A:HEC1
|
3.0
|
10.3
|
1.0
|
C4A
|
A:HEC1
|
3.1
|
8.7
|
1.0
|
C4D
|
A:HEC1
|
3.1
|
9.7
|
1.0
|
C4C
|
A:HEC1
|
3.1
|
10.2
|
1.0
|
C1C
|
A:HEC1
|
3.1
|
8.6
|
1.0
|
C1B
|
A:HEC1
|
3.1
|
8.9
|
1.0
|
CE
|
A:LYS126
|
3.1
|
9.5
|
1.0
|
C1D
|
A:HEC1
|
3.1
|
10.3
|
1.0
|
CHA
|
A:HEC1
|
3.4
|
9.1
|
1.0
|
CHC
|
A:HEC1
|
3.4
|
10.0
|
1.0
|
CHD
|
A:HEC1
|
3.4
|
9.5
|
1.0
|
CHB
|
A:HEC1
|
3.4
|
8.8
|
1.0
|
NE2
|
A:HIS264
|
4.2
|
9.4
|
1.0
|
O
|
A:HOH560
|
4.2
|
21.8
|
1.0
|
O
|
A:HOH484
|
4.2
|
11.4
|
1.0
|
C2A
|
A:HEC1
|
4.3
|
7.8
|
1.0
|
C3B
|
A:HEC1
|
4.3
|
10.0
|
1.0
|
C3A
|
A:HEC1
|
4.3
|
8.2
|
1.0
|
C2B
|
A:HEC1
|
4.3
|
9.4
|
1.0
|
C2C
|
A:HEC1
|
4.3
|
9.9
|
1.0
|
C3C
|
A:HEC1
|
4.3
|
9.7
|
1.0
|
C3D
|
A:HEC1
|
4.3
|
9.6
|
1.0
|
C2D
|
A:HEC1
|
4.3
|
10.2
|
1.0
|
CD
|
A:LYS126
|
4.5
|
9.6
|
1.0
|
O
|
A:HOH501
|
4.6
|
9.2
|
1.0
|
CMD
|
A:HEC3
|
4.9
|
7.9
|
1.0
|
|
Iron binding site 2 out
of 20 in 2rdz
Go back to
Iron Binding Sites List in 2rdz
Iron binding site 2 out
of 20 in the High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe2
b:13.2
occ:1.00
|
FE
|
A:HEC2
|
0.0
|
13.2
|
1.0
|
NE2
|
A:HIS164
|
2.0
|
13.1
|
1.0
|
ND
|
A:HEC2
|
2.0
|
12.3
|
1.0
|
NE2
|
A:HIS301
|
2.0
|
13.2
|
1.0
|
NA
|
A:HEC2
|
2.1
|
12.6
|
1.0
|
NB
|
A:HEC2
|
2.1
|
13.0
|
1.0
|
NC
|
A:HEC2
|
2.1
|
12.1
|
1.0
|
CE1
|
A:HIS164
|
3.0
|
12.7
|
1.0
|
CD2
|
A:HIS164
|
3.0
|
12.0
|
1.0
|
CD2
|
A:HIS301
|
3.0
|
10.8
|
1.0
|
C4A
|
A:HEC2
|
3.0
|
13.9
|
1.0
|
C1D
|
A:HEC2
|
3.0
|
12.5
|
1.0
|
C4D
|
A:HEC2
|
3.1
|
13.2
|
1.0
|
C1A
|
A:HEC2
|
3.1
|
13.3
|
1.0
|
CE1
|
A:HIS301
|
3.1
|
13.7
|
1.0
|
C1B
|
A:HEC2
|
3.1
|
14.6
|
1.0
|
C4C
|
A:HEC2
|
3.1
|
12.2
|
1.0
|
C1C
|
A:HEC2
|
3.1
|
12.9
|
1.0
|
C4B
|
A:HEC2
|
3.1
|
12.9
|
1.0
|
CHB
|
A:HEC2
|
3.4
|
12.6
|
1.0
|
CHA
|
A:HEC2
|
3.4
|
13.6
|
1.0
|
CHD
|
A:HEC2
|
3.4
|
12.4
|
1.0
|
CHC
|
A:HEC2
|
3.5
|
13.2
|
1.0
|
ND1
|
A:HIS164
|
4.1
|
11.5
|
1.0
|
CG
|
A:HIS164
|
4.1
|
12.3
|
1.0
|
ND1
|
A:HIS301
|
4.2
|
14.3
|
1.0
|
CG
|
A:HIS301
|
4.2
|
12.3
|
1.0
|
C3A
|
A:HEC2
|
4.2
|
12.3
|
1.0
|
C2A
|
A:HEC2
|
4.3
|
12.2
|
1.0
|
C2D
|
A:HEC2
|
4.3
|
12.2
|
1.0
|
C2B
|
A:HEC2
|
4.3
|
12.8
|
1.0
|
C3D
|
A:HEC2
|
4.3
|
12.1
|
1.0
|
C2C
|
A:HEC2
|
4.3
|
10.2
|
1.0
|
C3C
|
A:HEC2
|
4.3
|
12.0
|
1.0
|
C3B
|
A:HEC2
|
4.3
|
13.1
|
1.0
|
CE
|
A:MET287
|
4.8
|
17.5
|
1.0
|
|
Iron binding site 3 out
of 20 in 2rdz
Go back to
Iron Binding Sites List in 2rdz
Iron binding site 3 out
of 20 in the High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe3
b:10.0
occ:1.00
|
FE
|
A:HEC3
|
0.0
|
10.0
|
1.0
|
ND
|
A:HEC3
|
2.0
|
9.8
|
1.0
|
NB
|
A:HEC3
|
2.0
|
9.2
|
1.0
|
NE2
|
A:HIS213
|
2.0
|
9.3
|
1.0
|
NE2
|
A:HIS94
|
2.0
|
11.2
|
1.0
|
NA
|
A:HEC3
|
2.1
|
8.1
|
1.0
|
NC
|
A:HEC3
|
2.1
|
10.0
|
1.0
|
CE1
|
A:HIS213
|
3.0
|
8.2
|
1.0
|
C1D
|
A:HEC3
|
3.0
|
9.4
|
1.0
|
CE1
|
A:HIS94
|
3.0
|
11.8
|
1.0
|
CD2
|
A:HIS94
|
3.0
|
10.9
|
1.0
|
C1B
|
A:HEC3
|
3.0
|
8.2
|
1.0
|
CD2
|
A:HIS213
|
3.1
|
10.4
|
1.0
|
C4D
|
A:HEC3
|
3.1
|
10.5
|
1.0
|
C4A
|
A:HEC3
|
3.1
|
7.9
|
1.0
|
C4B
|
A:HEC3
|
3.1
|
9.4
|
1.0
|
C1A
|
A:HEC3
|
3.1
|
8.0
|
1.0
|
C4C
|
A:HEC3
|
3.1
|
10.1
|
1.0
|
C1C
|
A:HEC3
|
3.1
|
10.0
|
1.0
|
CHD
|
A:HEC3
|
3.4
|
9.8
|
1.0
|
CHB
|
A:HEC3
|
3.4
|
8.9
|
1.0
|
CHA
|
A:HEC3
|
3.4
|
8.7
|
1.0
|
CHC
|
A:HEC3
|
3.5
|
10.6
|
1.0
|
ND1
|
A:HIS213
|
4.1
|
9.0
|
1.0
|
ND1
|
A:HIS94
|
4.1
|
11.7
|
1.0
|
CG
|
A:HIS94
|
4.2
|
11.6
|
1.0
|
CG
|
A:HIS213
|
4.2
|
8.9
|
1.0
|
C2B
|
A:HEC3
|
4.3
|
10.1
|
1.0
|
C2D
|
A:HEC3
|
4.3
|
10.0
|
1.0
|
C3D
|
A:HEC3
|
4.3
|
9.7
|
1.0
|
C3B
|
A:HEC3
|
4.3
|
9.0
|
1.0
|
C3A
|
A:HEC3
|
4.3
|
8.2
|
1.0
|
C2A
|
A:HEC3
|
4.3
|
8.6
|
1.0
|
C3C
|
A:HEC3
|
4.3
|
9.9
|
1.0
|
C2C
|
A:HEC3
|
4.3
|
9.4
|
1.0
|
|
Iron binding site 4 out
of 20 in 2rdz
Go back to
Iron Binding Sites List in 2rdz
Iron binding site 4 out
of 20 in the High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe4
b:9.8
occ:1.00
|
FE
|
A:HEC4
|
0.0
|
9.8
|
1.0
|
NC
|
A:HEC4
|
2.0
|
8.2
|
1.0
|
ND
|
A:HEC4
|
2.0
|
9.4
|
1.0
|
NB
|
A:HEC4
|
2.0
|
6.9
|
1.0
|
NA
|
A:HEC4
|
2.1
|
8.8
|
1.0
|
NE2
|
A:HIS286
|
2.1
|
10.8
|
1.0
|
NE2
|
A:HIS393
|
2.1
|
8.8
|
1.0
|
CE1
|
A:HIS393
|
3.0
|
7.6
|
1.0
|
C1D
|
A:HEC4
|
3.0
|
9.7
|
1.0
|
C4B
|
A:HEC4
|
3.0
|
8.6
|
1.0
|
C1C
|
A:HEC4
|
3.0
|
8.7
|
1.0
|
C4C
|
A:HEC4
|
3.0
|
8.9
|
1.0
|
CD2
|
A:HIS286
|
3.1
|
9.3
|
1.0
|
CE1
|
A:HIS286
|
3.1
|
11.2
|
1.0
|
C1A
|
A:HEC4
|
3.1
|
8.8
|
1.0
|
C1B
|
A:HEC4
|
3.1
|
9.4
|
1.0
|
C4D
|
A:HEC4
|
3.1
|
10.1
|
1.0
|
C4A
|
A:HEC4
|
3.1
|
9.4
|
1.0
|
CD2
|
A:HIS393
|
3.1
|
7.9
|
1.0
|
CHD
|
A:HEC4
|
3.4
|
9.4
|
1.0
|
CHC
|
A:HEC4
|
3.4
|
9.3
|
1.0
|
CHA
|
A:HEC4
|
3.4
|
8.8
|
1.0
|
CHB
|
A:HEC4
|
3.4
|
8.8
|
1.0
|
ND1
|
A:HIS393
|
4.1
|
7.1
|
1.0
|
ND1
|
A:HIS286
|
4.2
|
9.4
|
1.0
|
CG
|
A:HIS286
|
4.2
|
9.2
|
1.0
|
CG
|
A:HIS393
|
4.2
|
6.6
|
1.0
|
C2D
|
A:HEC4
|
4.3
|
9.9
|
1.0
|
C2C
|
A:HEC4
|
4.3
|
8.1
|
1.0
|
C3B
|
A:HEC4
|
4.3
|
7.4
|
1.0
|
C3C
|
A:HEC4
|
4.3
|
7.0
|
1.0
|
C2B
|
A:HEC4
|
4.3
|
8.1
|
1.0
|
C2A
|
A:HEC4
|
4.3
|
9.6
|
1.0
|
C3A
|
A:HEC4
|
4.3
|
8.9
|
1.0
|
C3D
|
A:HEC4
|
4.3
|
11.0
|
1.0
|
|
Iron binding site 5 out
of 20 in 2rdz
Go back to
Iron Binding Sites List in 2rdz
Iron binding site 5 out
of 20 in the High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe5
b:10.3
occ:1.00
|
FE
|
A:HEC5
|
0.0
|
10.3
|
1.0
|
NC
|
A:HEC5
|
2.0
|
10.3
|
1.0
|
NA
|
A:HEC5
|
2.0
|
9.3
|
1.0
|
NE2
|
A:HIS318
|
2.0
|
10.2
|
1.0
|
NB
|
A:HEC5
|
2.0
|
8.6
|
1.0
|
NE2
|
A:HIS275
|
2.1
|
9.6
|
1.0
|
ND
|
A:HEC5
|
2.1
|
9.9
|
1.0
|
CE1
|
A:HIS318
|
3.0
|
11.2
|
1.0
|
C1C
|
A:HEC5
|
3.0
|
9.5
|
1.0
|
C1A
|
A:HEC5
|
3.0
|
9.7
|
1.0
|
CD2
|
A:HIS275
|
3.0
|
10.2
|
1.0
|
C4B
|
A:HEC5
|
3.0
|
9.9
|
1.0
|
C4A
|
A:HEC5
|
3.1
|
11.1
|
1.0
|
CE1
|
A:HIS275
|
3.1
|
10.6
|
1.0
|
C4C
|
A:HEC5
|
3.1
|
9.9
|
1.0
|
C1B
|
A:HEC5
|
3.1
|
8.6
|
1.0
|
C4D
|
A:HEC5
|
3.1
|
12.3
|
1.0
|
CD2
|
A:HIS318
|
3.1
|
9.4
|
1.0
|
C1D
|
A:HEC5
|
3.1
|
10.7
|
1.0
|
CHC
|
A:HEC5
|
3.4
|
8.8
|
1.0
|
CHA
|
A:HEC5
|
3.4
|
11.2
|
1.0
|
CHB
|
A:HEC5
|
3.4
|
9.4
|
1.0
|
CHD
|
A:HEC5
|
3.4
|
10.5
|
1.0
|
ND1
|
A:HIS318
|
4.1
|
12.1
|
1.0
|
ND1
|
A:HIS275
|
4.2
|
6.9
|
1.0
|
CG
|
A:HIS275
|
4.2
|
9.1
|
1.0
|
CG
|
A:HIS318
|
4.2
|
11.0
|
1.0
|
C2C
|
A:HEC5
|
4.3
|
10.8
|
1.0
|
C2A
|
A:HEC5
|
4.3
|
13.2
|
1.0
|
C3B
|
A:HEC5
|
4.3
|
9.8
|
1.0
|
C3A
|
A:HEC5
|
4.3
|
13.0
|
1.0
|
C2B
|
A:HEC5
|
4.3
|
9.7
|
1.0
|
C3C
|
A:HEC5
|
4.3
|
10.7
|
1.0
|
C3D
|
A:HEC5
|
4.3
|
11.7
|
1.0
|
C2D
|
A:HEC5
|
4.4
|
12.2
|
1.0
|
CBC
|
A:HEC4
|
4.8
|
5.8
|
1.0
|
|
Iron binding site 6 out
of 20 in 2rdz
Go back to
Iron Binding Sites List in 2rdz
Iron binding site 6 out
of 20 in the High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1
b:9.5
occ:1.00
|
FE
|
B:HEC1
|
0.0
|
9.5
|
1.0
|
NC
|
B:HEC1
|
2.0
|
8.5
|
1.0
|
NA
|
B:HEC1
|
2.0
|
8.6
|
1.0
|
NB
|
B:HEC1
|
2.1
|
8.8
|
1.0
|
ND
|
B:HEC1
|
2.1
|
8.8
|
1.0
|
O
|
B:HOH522
|
2.2
|
11.6
|
1.0
|
NZ
|
B:LYS126
|
2.2
|
9.2
|
1.0
|
C1C
|
B:HEC1
|
3.0
|
8.8
|
1.0
|
C4C
|
B:HEC1
|
3.1
|
8.2
|
1.0
|
C1A
|
B:HEC1
|
3.1
|
8.5
|
1.0
|
C4B
|
B:HEC1
|
3.1
|
7.5
|
1.0
|
C4A
|
B:HEC1
|
3.1
|
8.7
|
1.0
|
C1D
|
B:HEC1
|
3.1
|
9.0
|
1.0
|
C4D
|
B:HEC1
|
3.1
|
8.9
|
1.0
|
C1B
|
B:HEC1
|
3.1
|
9.4
|
1.0
|
CE
|
B:LYS126
|
3.2
|
9.3
|
1.0
|
CHC
|
B:HEC1
|
3.4
|
7.5
|
1.0
|
CHD
|
B:HEC1
|
3.4
|
8.3
|
1.0
|
CHA
|
B:HEC1
|
3.4
|
6.6
|
1.0
|
CHB
|
B:HEC1
|
3.4
|
8.1
|
1.0
|
NE2
|
B:HIS264
|
4.2
|
9.5
|
1.0
|
O
|
B:HOH490
|
4.2
|
8.9
|
1.0
|
C2C
|
B:HEC1
|
4.3
|
7.7
|
1.0
|
C3C
|
B:HEC1
|
4.3
|
9.1
|
1.0
|
C3A
|
B:HEC1
|
4.3
|
8.3
|
1.0
|
C2A
|
B:HEC1
|
4.3
|
7.3
|
1.0
|
C3B
|
B:HEC1
|
4.3
|
9.1
|
1.0
|
C2B
|
B:HEC1
|
4.3
|
8.8
|
1.0
|
C2D
|
B:HEC1
|
4.3
|
9.0
|
1.0
|
C3D
|
B:HEC1
|
4.4
|
7.9
|
1.0
|
O
|
B:HOH579
|
4.4
|
20.7
|
1.0
|
CD
|
B:LYS126
|
4.5
|
8.4
|
1.0
|
O
|
B:HOH545
|
4.6
|
12.8
|
1.0
|
CMD
|
B:HEC3
|
4.9
|
7.7
|
1.0
|
NH2
|
B:ARG106
|
5.0
|
11.1
|
1.0
|
CD2
|
B:HIS264
|
5.0
|
10.0
|
1.0
|
|
Iron binding site 7 out
of 20 in 2rdz
Go back to
Iron Binding Sites List in 2rdz
Iron binding site 7 out
of 20 in the High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe2
b:10.3
occ:1.00
|
FE
|
B:HEC2
|
0.0
|
10.3
|
1.0
|
NE2
|
B:HIS301
|
2.0
|
9.5
|
1.0
|
NB
|
B:HEC2
|
2.0
|
8.9
|
1.0
|
NE2
|
B:HIS164
|
2.1
|
9.2
|
1.0
|
ND
|
B:HEC2
|
2.1
|
8.6
|
1.0
|
NC
|
B:HEC2
|
2.1
|
9.8
|
1.0
|
NA
|
B:HEC2
|
2.1
|
10.7
|
1.0
|
CD2
|
B:HIS301
|
3.0
|
8.8
|
1.0
|
CE1
|
B:HIS301
|
3.0
|
8.1
|
1.0
|
CE1
|
B:HIS164
|
3.0
|
10.4
|
1.0
|
CD2
|
B:HIS164
|
3.0
|
10.3
|
1.0
|
C1B
|
B:HEC2
|
3.1
|
9.1
|
1.0
|
C4B
|
B:HEC2
|
3.1
|
9.7
|
1.0
|
C4A
|
B:HEC2
|
3.1
|
10.3
|
1.0
|
C1C
|
B:HEC2
|
3.1
|
9.6
|
1.0
|
C4D
|
B:HEC2
|
3.1
|
9.3
|
1.0
|
C4C
|
B:HEC2
|
3.1
|
8.8
|
1.0
|
C1A
|
B:HEC2
|
3.1
|
10.5
|
1.0
|
C1D
|
B:HEC2
|
3.3
|
9.4
|
1.0
|
CHC
|
B:HEC2
|
3.4
|
9.7
|
1.0
|
CHB
|
B:HEC2
|
3.4
|
9.7
|
1.0
|
CHD
|
B:HEC2
|
3.4
|
8.5
|
1.0
|
CHA
|
B:HEC2
|
3.4
|
10.1
|
1.0
|
ND1
|
B:HIS301
|
4.1
|
10.5
|
1.0
|
CG
|
B:HIS301
|
4.1
|
9.2
|
1.0
|
ND1
|
B:HIS164
|
4.2
|
8.7
|
1.0
|
CG
|
B:HIS164
|
4.2
|
10.5
|
1.0
|
C2B
|
B:HEC2
|
4.3
|
9.9
|
1.0
|
C3A
|
B:HEC2
|
4.3
|
9.1
|
1.0
|
C2A
|
B:HEC2
|
4.3
|
9.9
|
1.0
|
C3B
|
B:HEC2
|
4.3
|
8.7
|
1.0
|
C2C
|
B:HEC2
|
4.3
|
7.7
|
1.0
|
C3C
|
B:HEC2
|
4.3
|
8.7
|
1.0
|
C3D
|
B:HEC2
|
4.3
|
8.1
|
1.0
|
C2D
|
B:HEC2
|
4.3
|
8.8
|
1.0
|
CE
|
B:MET287
|
4.8
|
11.9
|
1.0
|
|
Iron binding site 8 out
of 20 in 2rdz
Go back to
Iron Binding Sites List in 2rdz
Iron binding site 8 out
of 20 in the High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe3
b:8.8
occ:1.00
|
FE
|
B:HEC3
|
0.0
|
8.8
|
1.0
|
ND
|
B:HEC3
|
2.0
|
8.0
|
1.0
|
NA
|
B:HEC3
|
2.0
|
7.1
|
1.0
|
NB
|
B:HEC3
|
2.0
|
7.3
|
1.0
|
NE2
|
B:HIS213
|
2.1
|
6.2
|
1.0
|
NE2
|
B:HIS94
|
2.1
|
6.4
|
1.0
|
NC
|
B:HEC3
|
2.1
|
7.8
|
1.0
|
CE1
|
B:HIS213
|
3.0
|
5.3
|
1.0
|
C1D
|
B:HEC3
|
3.0
|
6.8
|
1.0
|
CE1
|
B:HIS94
|
3.0
|
6.7
|
1.0
|
C1A
|
B:HEC3
|
3.1
|
7.7
|
1.0
|
CD2
|
B:HIS94
|
3.1
|
6.1
|
1.0
|
C4D
|
B:HEC3
|
3.1
|
7.7
|
1.0
|
C4B
|
B:HEC3
|
3.1
|
7.1
|
1.0
|
C1B
|
B:HEC3
|
3.1
|
6.8
|
1.0
|
CD2
|
B:HIS213
|
3.1
|
6.4
|
1.0
|
C4A
|
B:HEC3
|
3.1
|
6.7
|
1.0
|
C1C
|
B:HEC3
|
3.1
|
5.9
|
1.0
|
C4C
|
B:HEC3
|
3.1
|
8.2
|
1.0
|
CHD
|
B:HEC3
|
3.4
|
7.7
|
1.0
|
CHA
|
B:HEC3
|
3.4
|
6.9
|
1.0
|
CHC
|
B:HEC3
|
3.4
|
7.3
|
1.0
|
CHB
|
B:HEC3
|
3.4
|
6.2
|
1.0
|
ND1
|
B:HIS213
|
4.1
|
7.4
|
1.0
|
ND1
|
B:HIS94
|
4.2
|
7.8
|
1.0
|
CG
|
B:HIS213
|
4.2
|
6.2
|
1.0
|
CG
|
B:HIS94
|
4.2
|
8.9
|
1.0
|
C3D
|
B:HEC3
|
4.3
|
9.5
|
1.0
|
C2D
|
B:HEC3
|
4.3
|
8.9
|
1.0
|
C2A
|
B:HEC3
|
4.3
|
8.3
|
1.0
|
C3A
|
B:HEC3
|
4.3
|
7.6
|
1.0
|
C3B
|
B:HEC3
|
4.3
|
6.6
|
1.0
|
C2B
|
B:HEC3
|
4.3
|
7.3
|
1.0
|
C2C
|
B:HEC3
|
4.3
|
6.4
|
1.0
|
C3C
|
B:HEC3
|
4.3
|
7.1
|
1.0
|
|
Iron binding site 9 out
of 20 in 2rdz
Go back to
Iron Binding Sites List in 2rdz
Iron binding site 9 out
of 20 in the High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe4
b:9.7
occ:1.00
|
FE
|
B:HEC4
|
0.0
|
9.7
|
1.0
|
NB
|
B:HEC4
|
2.0
|
6.5
|
1.0
|
NA
|
B:HEC4
|
2.0
|
8.1
|
1.0
|
NE2
|
B:HIS393
|
2.0
|
8.8
|
1.0
|
NE2
|
B:HIS286
|
2.1
|
7.2
|
1.0
|
NC
|
B:HEC4
|
2.1
|
8.8
|
1.0
|
ND
|
B:HEC4
|
2.1
|
8.9
|
1.0
|
CE1
|
B:HIS393
|
2.9
|
9.6
|
1.0
|
CE1
|
B:HIS286
|
3.0
|
8.3
|
1.0
|
C1A
|
B:HEC4
|
3.0
|
10.2
|
1.0
|
C4D
|
B:HEC4
|
3.0
|
10.7
|
1.0
|
C4B
|
B:HEC4
|
3.0
|
8.0
|
1.0
|
C1B
|
B:HEC4
|
3.1
|
6.7
|
1.0
|
CD2
|
B:HIS286
|
3.1
|
6.7
|
1.0
|
C4A
|
B:HEC4
|
3.1
|
7.7
|
1.0
|
C4C
|
B:HEC4
|
3.1
|
7.8
|
1.0
|
C1C
|
B:HEC4
|
3.1
|
8.4
|
1.0
|
C1D
|
B:HEC4
|
3.1
|
7.9
|
1.0
|
CD2
|
B:HIS393
|
3.1
|
10.2
|
1.0
|
CHA
|
B:HEC4
|
3.4
|
8.8
|
1.0
|
CHB
|
B:HEC4
|
3.4
|
7.5
|
1.0
|
CHC
|
B:HEC4
|
3.4
|
7.9
|
1.0
|
CHD
|
B:HEC4
|
3.4
|
8.3
|
1.0
|
ND1
|
B:HIS393
|
4.1
|
9.3
|
1.0
|
ND1
|
B:HIS286
|
4.1
|
6.2
|
1.0
|
CG
|
B:HIS286
|
4.2
|
8.1
|
1.0
|
CG
|
B:HIS393
|
4.2
|
7.2
|
1.0
|
C3B
|
B:HEC4
|
4.3
|
6.0
|
1.0
|
C2A
|
B:HEC4
|
4.3
|
10.2
|
1.0
|
C2B
|
B:HEC4
|
4.3
|
7.8
|
1.0
|
C2C
|
B:HEC4
|
4.3
|
7.2
|
1.0
|
C3D
|
B:HEC4
|
4.3
|
9.6
|
1.0
|
C3A
|
B:HEC4
|
4.3
|
8.6
|
1.0
|
C3C
|
B:HEC4
|
4.3
|
8.0
|
1.0
|
C2D
|
B:HEC4
|
4.3
|
8.7
|
1.0
|
|
Iron binding site 10 out
of 20 in 2rdz
Go back to
Iron Binding Sites List in 2rdz
Iron binding site 10 out
of 20 in the High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of High Resolution Crystal Structure of the Escherichia Coli Cytochrome C Nitrite Reductase. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe5
b:9.7
occ:1.00
|
FE
|
B:HEC5
|
0.0
|
9.7
|
1.0
|
NA
|
B:HEC5
|
2.0
|
10.5
|
1.0
|
NB
|
B:HEC5
|
2.0
|
8.9
|
1.0
|
NC
|
B:HEC5
|
2.0
|
9.6
|
1.0
|
NE2
|
B:HIS318
|
2.1
|
13.6
|
1.0
|
ND
|
B:HEC5
|
2.1
|
10.6
|
1.0
|
NE2
|
B:HIS275
|
2.1
|
9.5
|
1.0
|
CE1
|
B:HIS318
|
3.0
|
14.8
|
1.0
|
C4A
|
B:HEC5
|
3.0
|
10.5
|
1.0
|
C1B
|
B:HEC5
|
3.0
|
8.5
|
1.0
|
C4B
|
B:HEC5
|
3.0
|
8.6
|
1.0
|
C1C
|
B:HEC5
|
3.1
|
8.1
|
1.0
|
CE1
|
B:HIS275
|
3.1
|
12.7
|
1.0
|
C1A
|
B:HEC5
|
3.1
|
10.6
|
1.0
|
C1D
|
B:HEC5
|
3.1
|
11.9
|
1.0
|
CD2
|
B:HIS275
|
3.1
|
9.4
|
1.0
|
CD2
|
B:HIS318
|
3.1
|
11.2
|
1.0
|
C4C
|
B:HEC5
|
3.1
|
9.1
|
1.0
|
C4D
|
B:HEC5
|
3.1
|
11.1
|
1.0
|
CHB
|
B:HEC5
|
3.4
|
9.3
|
1.0
|
CHC
|
B:HEC5
|
3.4
|
8.7
|
1.0
|
CHD
|
B:HEC5
|
3.4
|
9.6
|
1.0
|
CHA
|
B:HEC5
|
3.4
|
12.0
|
1.0
|
ND1
|
B:HIS318
|
4.1
|
15.0
|
1.0
|
ND1
|
B:HIS275
|
4.2
|
8.8
|
1.0
|
CG
|
B:HIS318
|
4.2
|
11.6
|
1.0
|
CG
|
B:HIS275
|
4.2
|
9.5
|
1.0
|
C3A
|
B:HEC5
|
4.3
|
11.1
|
1.0
|
C2B
|
B:HEC5
|
4.3
|
8.8
|
1.0
|
C3B
|
B:HEC5
|
4.3
|
8.7
|
1.0
|
C2A
|
B:HEC5
|
4.3
|
13.2
|
1.0
|
C2C
|
B:HEC5
|
4.3
|
8.7
|
1.0
|
C2D
|
B:HEC5
|
4.3
|
11.4
|
1.0
|
C3C
|
B:HEC5
|
4.3
|
9.3
|
1.0
|
C3D
|
B:HEC5
|
4.3
|
12.7
|
1.0
|
CBC
|
B:HEC4
|
4.8
|
9.6
|
1.0
|
|
Reference:
T.A.Clarke,
G.L.Kemp,
J.H.Wonderen,
R.M.Doyle,
J.A.Cole,
N.Tovell,
M.R.Cheesman,
J.N.Butt,
D.J.Richardson,
A.M.Hemmings.
Role of A Conserved Glutamine Residue in Tuning the Catalytic Activity of Escherichia Coli Cytochrome C Nitrite Reductase. Biochemistry V. 47 3789 2008.
ISSN: ISSN 0006-2960
PubMed: 18311941
DOI: 10.1021/BI702175W
Page generated: Sun Aug 4 02:11:06 2024
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