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Iron in PDB 2rfc: Ligand Bound (4-Phenylimidazole) Crystal Structure of A Cytochrome P450 From the Thermoacidophilic Archaeon Picrophilus Torridus

Enzymatic activity of Ligand Bound (4-Phenylimidazole) Crystal Structure of A Cytochrome P450 From the Thermoacidophilic Archaeon Picrophilus Torridus

All present enzymatic activity of Ligand Bound (4-Phenylimidazole) Crystal Structure of A Cytochrome P450 From the Thermoacidophilic Archaeon Picrophilus Torridus:
1.14.14.1;

Protein crystallography data

The structure of Ligand Bound (4-Phenylimidazole) Crystal Structure of A Cytochrome P450 From the Thermoacidophilic Archaeon Picrophilus Torridus, PDB code: 2rfc was solved by W.W.Ho, H.Li, T.L.Poulos, C.R.Nishida, P.R.Ortiz De Montellano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.85 / 3.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.520, 141.010, 101.030, 90.00, 90.30, 90.00
R / Rfree (%) 22.9 / 33.4

Iron Binding Sites:

The binding sites of Iron atom in the Ligand Bound (4-Phenylimidazole) Crystal Structure of A Cytochrome P450 From the Thermoacidophilic Archaeon Picrophilus Torridus (pdb code 2rfc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Ligand Bound (4-Phenylimidazole) Crystal Structure of A Cytochrome P450 From the Thermoacidophilic Archaeon Picrophilus Torridus, PDB code: 2rfc:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 2rfc

Go back to Iron Binding Sites List in 2rfc
Iron binding site 1 out of 4 in the Ligand Bound (4-Phenylimidazole) Crystal Structure of A Cytochrome P450 From the Thermoacidophilic Archaeon Picrophilus Torridus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Ligand Bound (4-Phenylimidazole) Crystal Structure of A Cytochrome P450 From the Thermoacidophilic Archaeon Picrophilus Torridus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe410

b:42.1
occ:1.00
 FE A:HEM410 0.0 42.1 1.0
ND A:HEM410 1.9 42.1 1.0
NC A:HEM410 1.9 42.1 1.0
NB A:HEM410 2.0 42.1 1.0
NA A:HEM410 2.0 42.1 1.0
N3 A:PIM411 2.1 42.1 1.0
SG A:CYS304 2.3 42.1 1.0
C2 A:PIM411 2.8 42.1 1.0
C1D A:HEM410 3.0 42.1 1.0
C4D A:HEM410 3.0 42.1 1.0
C1C A:HEM410 3.0 42.1 1.0
C4B A:HEM410 3.0 42.1 1.0
C1B A:HEM410 3.0 42.1 1.0
C4C A:HEM410 3.0 42.1 1.0
C4A A:HEM410 3.0 42.1 1.0
C1A A:HEM410 3.1 42.1 1.0
C4 A:PIM411 3.2 42.1 1.0
CHC A:HEM410 3.4 42.1 1.0
CHD A:HEM410 3.4 42.1 1.0
CHB A:HEM410 3.4 42.1 1.0
CHA A:HEM410 3.4 42.1 1.0
CB A:CYS304 3.6 42.1 1.0
N1 A:PIM411 4.0 42.1 1.0
C5 A:PIM411 4.1 42.1 1.0
C3D A:HEM410 4.2 42.1 1.0
C3B A:HEM410 4.2 42.1 1.0
C2D A:HEM410 4.2 42.1 1.0
C2B A:HEM410 4.2 42.1 1.0
C2C A:HEM410 4.3 42.1 1.0
C3A A:HEM410 4.3 42.1 1.0
C2A A:HEM410 4.3 42.1 1.0
C3C A:HEM410 4.3 42.1 1.0
CA A:CYS304 4.4 42.1 1.0
OG1 A:THR201 4.9 33.6 1.0

Iron binding site 2 out of 4 in 2rfc

Go back to Iron Binding Sites List in 2rfc
Iron binding site 2 out of 4 in the Ligand Bound (4-Phenylimidazole) Crystal Structure of A Cytochrome P450 From the Thermoacidophilic Archaeon Picrophilus Torridus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Ligand Bound (4-Phenylimidazole) Crystal Structure of A Cytochrome P450 From the Thermoacidophilic Archaeon Picrophilus Torridus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe410

b:42.1
occ:1.00
 FE B:HEM410 0.0 42.1 1.0
NB B:HEM410 1.9 42.1 1.0
ND B:HEM410 1.9 42.1 1.0
NA B:HEM410 1.9 42.1 1.0
NC B:HEM410 2.1 42.1 1.0
N3 B:PIM411 2.3 42.1 1.0
SG B:CYS304 2.3 42.1 1.0
C1B B:HEM410 3.0 42.1 1.0
C1D B:HEM410 3.0 42.1 1.0
C4D B:HEM410 3.0 42.1 1.0
C4B B:HEM410 3.0 42.1 1.0
C1A B:HEM410 3.0 42.1 1.0
C4A B:HEM410 3.0 42.1 1.0
C1C B:HEM410 3.1 42.1 1.0
C4C B:HEM410 3.1 42.1 1.0
C2 B:PIM411 3.2 42.1 1.0
C4 B:PIM411 3.2 42.1 1.0
CHB B:HEM410 3.4 42.1 1.0
CHA B:HEM410 3.4 42.1 1.0
CHC B:HEM410 3.4 42.1 1.0
CHD B:HEM410 3.4 42.1 1.0
CB B:CYS304 3.5 42.1 1.0
C2B B:HEM410 4.2 42.1 1.0
C3D B:HEM410 4.2 42.1 1.0
C2D B:HEM410 4.2 42.1 1.0
CA B:CYS304 4.2 42.1 1.0
C3B B:HEM410 4.2 42.1 1.0
C2A B:HEM410 4.2 42.1 1.0
C3A B:HEM410 4.3 42.1 1.0
C5 B:PIM411 4.3 42.1 1.0
N1 B:PIM411 4.4 42.1 1.0
C2C B:HEM410 4.4 42.1 1.0
C3C B:HEM410 4.4 42.1 1.0
N B:LEU305 5.0 34.5 1.0
N B:GLY306 5.0 27.9 1.0
C B:CYS304 5.0 42.1 1.0

Iron binding site 3 out of 4 in 2rfc

Go back to Iron Binding Sites List in 2rfc
Iron binding site 3 out of 4 in the Ligand Bound (4-Phenylimidazole) Crystal Structure of A Cytochrome P450 From the Thermoacidophilic Archaeon Picrophilus Torridus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Ligand Bound (4-Phenylimidazole) Crystal Structure of A Cytochrome P450 From the Thermoacidophilic Archaeon Picrophilus Torridus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe410

b:42.1
occ:1.00
 FE C:HEM410 0.0 42.1 1.0
ND C:HEM410 1.9 42.1 1.0
NB C:HEM410 2.0 42.1 1.0
NC C:HEM410 2.0 42.1 1.0
NA C:HEM410 2.0 42.1 1.0
N3 C:PIM411 2.1 42.1 1.0
SG C:CYS304 2.2 42.1 1.0
C2 C:PIM411 2.6 42.1 1.0
C1D C:HEM410 3.0 42.1 1.0
C4C C:HEM410 3.0 42.1 1.0
C1B C:HEM410 3.0 42.1 1.0
C4D C:HEM410 3.0 42.1 1.0
C4B C:HEM410 3.0 42.1 1.0
C1C C:HEM410 3.1 42.1 1.0
C4A C:HEM410 3.1 42.1 1.0
C1A C:HEM410 3.1 42.1 1.0
CHD C:HEM410 3.4 42.1 1.0
CB C:CYS304 3.4 42.1 1.0
C4 C:PIM411 3.4 42.1 1.0
CHB C:HEM410 3.4 42.1 1.0
CHA C:HEM410 3.5 42.1 1.0
CHC C:HEM410 3.5 42.1 1.0
N1 C:PIM411 3.9 42.1 1.0
CA C:CYS304 4.1 42.1 1.0
C3D C:HEM410 4.2 42.1 1.0
C3C C:HEM410 4.2 42.1 1.0
C5 C:PIM411 4.2 42.1 1.0
C2B C:HEM410 4.2 42.1 1.0
C2D C:HEM410 4.3 42.1 1.0
C3B C:HEM410 4.3 42.1 1.0
C3A C:HEM410 4.3 42.1 1.0
C2C C:HEM410 4.3 42.1 1.0
C2A C:HEM410 4.3 42.1 1.0
C C:CYS304 4.9 42.1 1.0

Iron binding site 4 out of 4 in 2rfc

Go back to Iron Binding Sites List in 2rfc
Iron binding site 4 out of 4 in the Ligand Bound (4-Phenylimidazole) Crystal Structure of A Cytochrome P450 From the Thermoacidophilic Archaeon Picrophilus Torridus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Ligand Bound (4-Phenylimidazole) Crystal Structure of A Cytochrome P450 From the Thermoacidophilic Archaeon Picrophilus Torridus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe410

b:42.1
occ:1.00
 FE D:HEM410 0.0 42.1 1.0
NB D:HEM410 1.9 42.1 1.0
ND D:HEM410 2.0 42.1 1.0
NC D:HEM410 2.0 42.1 1.0
NA D:HEM410 2.0 42.1 1.0
N3 D:PIM411 2.1 42.1 1.0
SG D:CYS304 2.3 42.1 1.0
C2 D:PIM411 2.6 42.1 1.0
C4B D:HEM410 3.0 42.1 1.0
C1B D:HEM410 3.0 42.1 1.0
C1D D:HEM410 3.0 42.1 1.0
C4C D:HEM410 3.0 42.1 1.0
C4D D:HEM410 3.0 42.1 1.0
C1C D:HEM410 3.0 42.1 1.0
C4A D:HEM410 3.1 42.1 1.0
C1A D:HEM410 3.1 42.1 1.0
C4 D:PIM411 3.3 42.1 1.0
CHC D:HEM410 3.4 42.1 1.0
CHD D:HEM410 3.4 42.1 1.0
CHB D:HEM410 3.4 42.1 1.0
CHA D:HEM410 3.5 42.1 1.0
CB D:CYS304 3.6 42.1 1.0
N1 D:PIM411 3.8 42.1 1.0
C5 D:PIM411 4.2 42.1 1.0
C2B D:HEM410 4.2 42.1 1.0
C3B D:HEM410 4.2 42.1 1.0
C3D D:HEM410 4.2 42.1 1.0
C2D D:HEM410 4.3 42.1 1.0
C2C D:HEM410 4.3 42.1 1.0
C3C D:HEM410 4.3 42.1 1.0
CA D:CYS304 4.3 42.1 1.0
C3A D:HEM410 4.3 42.1 1.0
C2A D:HEM410 4.3 42.1 1.0

Reference:

W.W.Ho, H.Li, C.R.Nishida, P.R.Ortiz De Montellano, T.L.Poulos. Crystal Structure and Properties of CYP231A2 From the Thermoacidophilic Archaeon Picrophilus Torridus. Biochemistry V. 47 2071 2008.
ISSN: ISSN 0006-2960
PubMed: 18197710
DOI: 10.1021/BI702240K
Page generated: Sun Dec 13 14:52:54 2020

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