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Iron in PDB 2rg4: Crystal Structure of the Uncharacterized Protein Q2CBJ1_9RHOB From Oceanicola Granulosus HTCC2516

Protein crystallography data

The structure of Crystal Structure of the Uncharacterized Protein Q2CBJ1_9RHOB From Oceanicola Granulosus HTCC2516, PDB code: 2rg4 was solved by V.N.Malashkevich, R.Toro, A.J.Meyer, J.M.Sauder, S.K.Burley, S.C.Almo, Newyork Sgx Research Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.38 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 69.476, 69.476, 164.660, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 27.7

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of the Uncharacterized Protein Q2CBJ1_9RHOB From Oceanicola Granulosus HTCC2516 (pdb code 2rg4). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of the Uncharacterized Protein Q2CBJ1_9RHOB From Oceanicola Granulosus HTCC2516, PDB code: 2rg4:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2rg4

Go back to Iron Binding Sites List in 2rg4
Iron binding site 1 out of 2 in the Crystal Structure of the Uncharacterized Protein Q2CBJ1_9RHOB From Oceanicola Granulosus HTCC2516


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Uncharacterized Protein Q2CBJ1_9RHOB From Oceanicola Granulosus HTCC2516 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe217

b:32.7
occ:1.00
NE2 A:HIS119 2.1 34.4 1.0
NE2 A:HIS121 2.2 19.1 1.0
NE2 A:HIS187 2.2 18.1 1.0
O A:HOH292 2.3 29.3 1.0
O A:HOH294 2.4 41.5 1.0
O A:HOH414 2.5 39.6 1.0
CE1 A:HIS119 2.5 42.5 1.0
CE1 A:HIS121 3.0 39.9 1.0
CE1 A:HIS187 3.1 16.6 1.0
CD2 A:HIS121 3.3 35.6 1.0
CD2 A:HIS187 3.3 11.6 1.0
CD2 A:HIS119 3.3 29.9 1.0
ND1 A:HIS119 3.8 33.1 1.0
O A:HOH410 4.1 39.9 1.0
O A:HOH313 4.1 32.8 1.0
CG A:HIS119 4.2 36.9 1.0
ND1 A:HIS121 4.2 33.1 1.0
ND1 A:HIS187 4.2 15.0 1.0
CG A:HIS121 4.4 27.4 1.0
CG A:HIS187 4.4 15.8 1.0
O A:HOH279 4.6 41.4 1.0
CZ2 A:TRP181 4.9 22.3 1.0
O A:HOH264 4.9 31.8 1.0

Iron binding site 2 out of 2 in 2rg4

Go back to Iron Binding Sites List in 2rg4
Iron binding site 2 out of 2 in the Crystal Structure of the Uncharacterized Protein Q2CBJ1_9RHOB From Oceanicola Granulosus HTCC2516


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the Uncharacterized Protein Q2CBJ1_9RHOB From Oceanicola Granulosus HTCC2516 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe217

b:40.1
occ:1.00
NE2 B:HIS187 2.2 25.8 1.0
NE2 B:HIS121 2.3 22.8 1.0
NE2 B:HIS119 2.3 33.4 1.0
O B:HOH367 2.4 37.7 1.0
O B:HOH245 2.6 39.0 1.0
CE1 B:HIS119 3.0 38.4 1.0
CE1 B:HIS121 3.1 50.9 1.0
CE1 B:HIS187 3.1 24.6 1.0
CD2 B:HIS187 3.2 17.0 1.0
CD2 B:HIS121 3.3 47.6 1.0
CD2 B:HIS119 3.4 45.4 1.0
O B:HOH244 3.5 53.0 1.0
O B:HOH243 4.0 34.3 1.0
ND1 B:HIS119 4.2 37.5 1.0
ND1 B:HIS121 4.2 44.2 1.0
ND1 B:HIS187 4.3 30.7 1.0
CG B:HIS121 4.3 36.3 1.0
CG B:HIS187 4.3 23.7 1.0
CG B:HIS119 4.4 40.2 1.0
CZ2 B:TRP181 4.5 23.1 1.0
CE1 B:HIS116 4.7 53.8 1.0

Reference:

V.N.Malashkevich, R.Toro, A.J.Meyer, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of the Uncharacterized Protein Q2CBJ1_9RHOB From Oceanicola Granulosus HTCC2516. To Be Published.
Page generated: Sun Dec 13 14:52:53 2020

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