Iron in PDB 2ri4: Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom

The structure of Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom, PDB code: 2ri4 was solved by P.Sathya Moorthy, K.Neelagandan, M.Balasubramanian, M.N.Ponnuswamy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.50 / 2.70
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	52.692, 68.325, 95.597, 110.64, 91.90, 108.94
R / Rfree (%)	22.5 / 30.8

The binding sites of Iron atom in the Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom (pdb code 2ri4). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom, PDB code: 2ri4:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in the Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe142 b:32.4 occ:1.00 FE A:HEM142 0.0 32.4 1.0 ND A:HEM142 2.0 33.5 1.0 NC A:HEM142 2.0 32.0 1.0 NE2 A:HIS87 2.0 28.6 1.0 NA A:HEM142 2.1 34.7 1.0 NB A:HEM142 2.2 31.5 1.0 CE1 A:HIS87 2.9 30.1 1.0 C4C A:HEM142 2.9 30.0 1.0 C4D A:HEM142 3.0 35.6 1.0 C1D A:HEM142 3.0 32.2 1.0 C1A A:HEM142 3.0 34.7 1.0 C1C A:HEM142 3.1 29.2 1.0 C4A A:HEM142 3.1 33.7 1.0 C1B A:HEM142 3.2 29.8 1.0 CD2 A:HIS87 3.2 32.3 1.0 C4B A:HEM142 3.2 30.7 1.0 CHD A:HEM142 3.3 31.0 1.0 CHA A:HEM142 3.3 35.0 1.0 CHB A:HEM142 3.5 31.8 1.0 CHC A:HEM142 3.6 28.1 1.0 ND1 A:HIS87 4.0 30.5 1.0 C3C A:HEM142 4.2 28.3 1.0 C3D A:HEM142 4.2 35.6 1.0 C2D A:HEM142 4.2 33.5 1.0 CG A:HIS87 4.2 33.8 1.0 C2C A:HEM142 4.2 28.1 1.0 C2A A:HEM142 4.3 36.7 1.0 C3A A:HEM142 4.3 35.6 1.0 NE2 A:HIS58 4.3 30.0 1.0 C2B A:HEM142 4.4 29.6 1.0 C3B A:HEM142 4.4 28.8 1.0 CG2 A:VAL62 4.4 44.3 1.0 CE1 A:HIS58 4.6 30.8 1.0

Iron binding site 2 out of 8 in the Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe147 b:54.1 occ:1.00 FE B:HEM147 0.0 54.1 1.0 NC B:HEM147 2.0 51.4 1.0 ND B:HEM147 2.0 51.7 1.0 NB B:HEM147 2.1 53.6 1.0 NE2 B:HIS92 2.2 52.8 1.0 NA B:HEM147 2.2 53.1 1.0 C4C B:HEM147 2.9 50.7 1.0 C1C B:HEM147 3.0 51.5 1.0 C1D B:HEM147 3.0 51.4 1.0 C4D B:HEM147 3.1 52.2 1.0 C4B B:HEM147 3.1 54.2 1.0 CE1 B:HIS92 3.1 53.3 1.0 C1A B:HEM147 3.1 53.1 1.0 CD2 B:HIS92 3.1 54.3 1.0 C1B B:HEM147 3.2 53.7 1.0 C4A B:HEM147 3.2 53.0 1.0 CHD B:HEM147 3.3 51.0 1.0 CHC B:HEM147 3.4 53.1 1.0 CHA B:HEM147 3.4 53.1 1.0 CHB B:HEM147 3.6 52.6 1.0 NE2 B:HIS63 3.7 45.7 1.0 C3C B:HEM147 4.1 51.0 1.0 C2C B:HEM147 4.1 50.7 1.0 ND1 B:HIS92 4.2 52.8 1.0 C2D B:HEM147 4.3 51.7 1.0 C3D B:HEM147 4.3 51.8 1.0 CG B:HIS92 4.3 54.3 1.0 C3B B:HEM147 4.3 54.9 1.0 C2B B:HEM147 4.4 54.8 1.0 C2A B:HEM147 4.4 53.1 1.0 C3A B:HEM147 4.4 52.1 1.0 CE1 B:HIS63 4.5 43.4 1.0 CG2 B:VAL67 4.5 51.8 1.0 CD2 B:HIS63 4.7 44.6 1.0

Iron binding site 3 out of 8 in the Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe142 b:33.3 occ:1.00 FE C:HEM142 0.0 33.3 1.0 NC C:HEM142 2.0 32.2 1.0 NE2 C:HIS87 2.0 30.6 1.0 O C:HOH145 2.0 25.6 1.0 ND C:HEM142 2.0 32.4 1.0 NA C:HEM142 2.0 31.9 1.0 NB C:HEM142 2.1 29.7 1.0 C4C C:HEM142 2.9 33.1 1.0 CE1 C:HIS87 2.9 30.2 1.0 C1D C:HEM142 2.9 33.9 1.0 CD2 C:HIS87 3.0 29.9 1.0 C4A C:HEM142 3.0 32.2 1.0 C1A C:HEM142 3.1 33.3 1.0 C1C C:HEM142 3.1 32.0 1.0 C4D C:HEM142 3.1 35.5 1.0 C1B C:HEM142 3.1 29.1 1.0 C4B C:HEM142 3.2 30.3 1.0 CHD C:HEM142 3.2 35.1 1.0 CHA C:HEM142 3.4 35.2 1.0 CHB C:HEM142 3.4 31.2 1.0 CHC C:HEM142 3.5 31.6 1.0 ND1 C:HIS87 4.0 30.2 1.0 CG C:HIS87 4.1 32.3 1.0 C3C C:HEM142 4.1 32.7 1.0 C2C C:HEM142 4.2 31.5 1.0 C2D C:HEM142 4.2 35.0 1.0 C3A C:HEM142 4.2 33.6 1.0 C2A C:HEM142 4.3 34.7 1.0 C3D C:HEM142 4.3 35.9 1.0 C2B C:HEM142 4.3 27.5 1.0 NE2 C:HIS58 4.4 26.4 1.0 C3B C:HEM142 4.4 27.7 1.0 CE1 C:HIS58 4.9 24.3 1.0 CG2 C:VAL62 4.9 29.1 1.0

Iron binding site 4 out of 8 in the Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe147 b:36.4 occ:1.00 FE D:HEM147 0.0 36.4 1.0 O D:HOH149 2.0 3.3 1.0 NE2 D:HIS92 2.0 47.5 1.0 ND D:HEM147 2.0 37.0 1.0 NB D:HEM147 2.0 36.1 1.0 NC D:HEM147 2.2 39.4 1.0 NA D:HEM147 2.2 39.0 1.0 CD2 D:HIS92 3.0 48.7 1.0 C4B D:HEM147 3.0 37.8 1.0 C4D D:HEM147 3.0 38.4 1.0 CE1 D:HIS92 3.0 48.7 1.0 C1D D:HEM147 3.1 37.1 1.0 C1B D:HEM147 3.1 37.2 1.0 C1C D:HEM147 3.1 36.7 1.0 C1A D:HEM147 3.2 37.8 1.0 C4C D:HEM147 3.2 38.1 1.0 C4A D:HEM147 3.3 38.7 1.0 CHC D:HEM147 3.4 36.0 1.0 CHA D:HEM147 3.4 38.0 1.0 CHD D:HEM147 3.5 37.3 1.0 CHB D:HEM147 3.6 38.1 1.0 ND1 D:HIS92 4.1 47.5 1.0 CG D:HIS92 4.1 48.5 1.0 C3B D:HEM147 4.2 38.4 1.0 C3D D:HEM147 4.3 37.3 1.0 C2B D:HEM147 4.3 39.1 1.0 C2D D:HEM147 4.3 38.3 1.0 C2C D:HEM147 4.3 37.4 1.0 C3C D:HEM147 4.4 37.9 1.0 C2A D:HEM147 4.4 38.7 1.0 C3A D:HEM147 4.5 38.2 1.0 NE2 D:HIS63 4.6 38.9 1.0

Iron binding site 5 out of 8 in the Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe142 b:29.3 occ:1.00 FE I:HEM142 0.0 29.3 1.0 O I:HOH145 1.6 12.5 1.0 NB I:HEM142 2.0 28.8 1.0 NC I:HEM142 2.1 28.1 1.0 NE2 I:HIS87 2.1 32.1 1.0 ND I:HEM142 2.1 29.6 1.0 NA I:HEM142 2.1 29.6 1.0 CD2 I:HIS87 2.9 34.6 1.0 C1B I:HEM142 3.0 27.9 1.0 C4B I:HEM142 3.0 29.7 1.0 C4C I:HEM142 3.0 26.8 1.0 C1D I:HEM142 3.1 29.1 1.0 C1C I:HEM142 3.1 26.4 1.0 C4A I:HEM142 3.1 29.4 1.0 CE1 I:HIS87 3.2 32.8 1.0 C4D I:HEM142 3.2 30.9 1.0 C1A I:HEM142 3.2 29.4 1.0 CHC I:HEM142 3.4 27.5 1.0 CHD I:HEM142 3.4 27.1 1.0 CHB I:HEM142 3.4 27.4 1.0 CHA I:HEM142 3.5 30.1 1.0 CG I:HIS87 4.1 34.0 1.0 C2B I:HEM142 4.2 31.0 1.0 ND1 I:HIS87 4.2 32.9 1.0 C3B I:HEM142 4.2 31.0 1.0 NE2 I:HIS58 4.3 24.9 1.0 C3C I:HEM142 4.3 25.6 1.0 C2C I:HEM142 4.3 26.1 1.0 C2D I:HEM142 4.3 31.2 1.0 C3A I:HEM142 4.4 30.4 1.0 C2A I:HEM142 4.4 31.2 1.0 C3D I:HEM142 4.4 31.0 1.0

Iron binding site 6 out of 8 in the Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ J:Fe147 b:53.4 occ:1.00 FE J:HEM147 0.0 53.4 1.0 ND J:HEM147 2.0 55.8 1.0 NC J:HEM147 2.0 54.8 1.0 NB J:HEM147 2.1 54.7 1.0 NA J:HEM147 2.1 56.1 1.0 NE2 J:HIS92 2.1 55.4 1.0 O J:HOH148 2.2 21.1 1.0 CE1 J:HIS92 2.7 56.0 1.0 C1D J:HEM147 2.9 56.6 1.0 C4C J:HEM147 3.0 55.2 1.0 C4A J:HEM147 3.1 56.5 1.0 C4D J:HEM147 3.1 56.9 1.0 C1B J:HEM147 3.1 54.5 1.0 C1A J:HEM147 3.1 57.2 1.0 C1C J:HEM147 3.1 54.6 1.0 C4B J:HEM147 3.1 54.1 1.0 CHD J:HEM147 3.3 56.2 1.0 CD2 J:HIS92 3.3 55.2 1.0 CHB J:HEM147 3.4 56.1 1.0 CHA J:HEM147 3.5 56.5 1.0 CHC J:HEM147 3.5 54.3 1.0 ND1 J:HIS92 4.0 56.1 1.0 NE2 J:HIS63 4.1 47.7 1.0 C2D J:HEM147 4.2 57.5 1.0 C3C J:HEM147 4.2 54.8 1.0 C3A J:HEM147 4.3 57.4 1.0 CE1 J:HIS63 4.3 47.5 1.0 CG J:HIS92 4.3 56.0 1.0 C2A J:HEM147 4.3 57.7 1.0 C3D J:HEM147 4.3 56.9 1.0 C2C J:HEM147 4.3 54.0 1.0 C2B J:HEM147 4.3 54.1 1.0 C3B J:HEM147 4.3 53.8 1.0 CG2 J:VAL67 4.9 41.8 1.0 CD2 J:LEU91 5.0 54.8 1.0

Iron binding site 7 out of 8 in the Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ K:Fe142 b:42.6 occ:1.00 FE K:HEM142 0.0 42.6 1.0 NA K:HEM142 2.0 45.2 1.0 ND K:HEM142 2.0 42.8 1.0 NE2 K:HIS87 2.0 44.6 1.0 NC K:HEM142 2.0 43.5 1.0 NB K:HEM142 2.1 44.5 1.0 CE1 K:HIS87 3.0 45.5 1.0 C4A K:HEM142 3.0 45.2 1.0 C1A K:HEM142 3.0 45.9 1.0 C4D K:HEM142 3.0 43.8 1.0 C1D K:HEM142 3.0 42.3 1.0 CD2 K:HIS87 3.0 44.5 1.0 C4C K:HEM142 3.0 42.7 1.0 C1B K:HEM142 3.1 44.4 1.0 C1C K:HEM142 3.1 43.1 1.0 C4B K:HEM142 3.1 44.6 1.0 CHB K:HEM142 3.4 45.5 1.0 CHA K:HEM142 3.4 44.7 1.0 CHD K:HEM142 3.4 42.4 1.0 CHC K:HEM142 3.5 43.3 1.0 ND1 K:HIS87 4.1 46.4 1.0 CG K:HIS87 4.2 44.9 1.0 C3A K:HEM142 4.2 45.2 1.0 C2A K:HEM142 4.2 46.3 1.0 NE2 K:HIS58 4.2 49.9 1.0 C3D K:HEM142 4.3 44.9 1.0 C3C K:HEM142 4.3 42.3 1.0 C2D K:HEM142 4.3 43.8 1.0 C2C K:HEM142 4.3 43.4 1.0 C2B K:HEM142 4.3 45.2 1.0 C3B K:HEM142 4.4 45.4 1.0 CE1 K:HIS58 4.9 49.9 1.0

Iron binding site 8 out of 8 in the Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ L:Fe147 b:43.6 occ:1.00 FE L:HEM147 0.0 43.6 1.0 NB L:HEM147 1.9 41.5 1.0 NE2 L:HIS92 1.9 43.8 1.0 NC L:HEM147 2.0 42.0 1.0 NA L:HEM147 2.1 41.5 1.0 ND L:HEM147 2.4 38.4 1.0 CE1 L:HIS92 2.9 45.2 1.0 C4B L:HEM147 2.9 42.7 1.0 CD2 L:HIS92 2.9 46.7 1.0 C1C L:HEM147 2.9 42.6 1.0 C1B L:HEM147 3.0 40.9 1.0 C4C L:HEM147 3.0 42.2 1.0 C4A L:HEM147 3.1 42.4 1.0 C1A L:HEM147 3.2 40.5 1.0 CHC L:HEM147 3.2 43.0 1.0 C1D L:HEM147 3.3 38.6 1.0 CHB L:HEM147 3.4 40.6 1.0 C4D L:HEM147 3.4 37.3 1.0 CHD L:HEM147 3.5 39.8 1.0 CHA L:HEM147 3.7 38.9 1.0 ND1 L:HIS92 4.0 46.7 1.0 CG L:HIS92 4.0 47.8 1.0 C3B L:HEM147 4.1 41.0 1.0 C2B L:HEM147 4.1 40.6 1.0 C2C L:HEM147 4.2 42.2 1.0 C3C L:HEM147 4.2 43.1 1.0 NE2 L:HIS63 4.4 44.4 1.0 C3A L:HEM147 4.4 42.2 1.0 C2A L:HEM147 4.4 39.9 1.0 C2D L:HEM147 4.6 39.0 1.0 C3D L:HEM147 4.7 39.4 1.0 CG2 L:VAL67 4.9 50.8 1.0 CZ L:PHE42 5.0 29.3 1.0

P.Sathya Moorthy, K.Neelagandan, M.Balasubramanian, M.N.Ponnuswamy. Crystal Structure Determination of Goat Methemoglobin at 2.7 Angstrom To Be Published.