Iron in PDB 2v08: Structure of Wild-Type Phormidium Laminosum Cytochrome C6

The structure of Structure of Wild-Type Phormidium Laminosum Cytochrome C6, PDB code: 2v08 was solved by J.A.R.Worrall, B.G.Schlarb-Ridley, T.Reda, M.J.Marcaida, R.J.Moorlen, J.Wastl, J.Hirst, D.S.Bendall, B.F.Luisi, C.J.Howe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.59 / 2.00
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	57.364, 57.364, 89.553, 90.00, 90.00, 120.00
R / Rfree (%)	18.4 / 25.5

The structure of Structure of Wild-Type Phormidium Laminosum Cytochrome C6 also contains other interesting chemical elements:

Chlorine	(Cl)	3 atoms
Zinc	(Zn)	9 atoms

The binding sites of Iron atom in the Structure of Wild-Type Phormidium Laminosum Cytochrome C6 (pdb code 2v08). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Wild-Type Phormidium Laminosum Cytochrome C6, PDB code: 2v08:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Structure of Wild-Type Phormidium Laminosum Cytochrome C6


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Wild-Type Phormidium Laminosum Cytochrome C6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1087 b:19.9 occ:1.00 FE A:HEC1087 0.0 19.9 1.0 NA A:HEC1087 2.0 12.3 1.0 NE2 A:HIS19 2.0 8.5 1.0 NB A:HEC1087 2.0 10.1 1.0 ND A:HEC1087 2.1 11.7 1.0 NC A:HEC1087 2.1 11.6 1.0 SD A:MET59 2.5 18.6 1.0 CE1 A:HIS19 3.0 9.0 1.0 C1B A:HEC1087 3.0 9.4 1.0 CD2 A:HIS19 3.0 6.6 1.0 C4A A:HEC1087 3.0 10.1 1.0 C1A A:HEC1087 3.0 11.6 1.0 C4D A:HEC1087 3.0 12.6 1.0 C4B A:HEC1087 3.0 10.4 1.0 C1D A:HEC1087 3.1 11.3 1.0 C1C A:HEC1087 3.1 8.7 1.0 C4C A:HEC1087 3.1 13.2 1.0 CHC A:HEC1087 3.4 10.7 1.0 CHB A:HEC1087 3.4 10.5 1.0 CHA A:HEC1087 3.4 10.1 1.0 CHD A:HEC1087 3.5 11.4 1.0 CG A:MET59 3.5 19.3 1.0 CE A:MET59 3.6 17.3 1.0 CB A:MET59 4.1 17.6 1.0 ND1 A:HIS19 4.1 9.3 1.0 CG A:HIS19 4.2 8.7 1.0 C3A A:HEC1087 4.2 10.9 1.0 C2B A:HEC1087 4.2 11.0 1.0 C2A A:HEC1087 4.2 12.5 1.0 C3D A:HEC1087 4.2 11.4 1.0 C2D A:HEC1087 4.3 11.7 1.0 C3B A:HEC1087 4.3 10.8 1.0 C2C A:HEC1087 4.3 12.6 1.0 C3C A:HEC1087 4.3 12.0 1.0

Iron binding site 2 out of 2 in the Structure of Wild-Type Phormidium Laminosum Cytochrome C6


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Wild-Type Phormidium Laminosum Cytochrome C6 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1087 b:26.5 occ:1.00 FE B:HEC1087 0.0 26.5 1.0 ND B:HEC1087 2.0 18.8 1.0 NE2 B:HIS19 2.0 12.1 1.0 NC B:HEC1087 2.1 17.8 1.0 NB B:HEC1087 2.1 23.1 1.0 NA B:HEC1087 2.1 21.0 1.0 SD B:MET59 2.3 23.2 1.0 CE1 B:HIS19 2.9 13.7 1.0 C1D B:HEC1087 3.0 19.2 1.0 C4C B:HEC1087 3.0 20.9 1.0 C4D B:HEC1087 3.0 21.0 1.0 C1C B:HEC1087 3.1 21.3 1.0 C4B B:HEC1087 3.1 21.1 1.0 CD2 B:HIS19 3.1 13.2 1.0 C1B B:HEC1087 3.1 21.8 1.0 C4A B:HEC1087 3.1 23.0 1.0 C1A B:HEC1087 3.1 21.4 1.0 CHD B:HEC1087 3.3 18.9 1.0 CE B:MET59 3.4 26.4 1.0 CHC B:HEC1087 3.4 18.9 1.0 CHA B:HEC1087 3.5 19.9 1.0 CHB B:HEC1087 3.5 21.1 1.0 CG B:MET59 3.6 24.9 1.0 CB B:MET59 4.0 24.5 1.0 ND1 B:HIS19 4.0 13.5 1.0 C2D B:HEC1087 4.2 19.4 1.0 CG B:HIS19 4.2 14.9 1.0 C3D B:HEC1087 4.2 18.9 1.0 C3C B:HEC1087 4.3 16.5 1.0 C2C B:HEC1087 4.3 19.4 1.0 C3B B:HEC1087 4.3 23.6 1.0 C2B B:HEC1087 4.4 22.9 1.0 C3A B:HEC1087 4.4 22.3 1.0 C2A B:HEC1087 4.4 19.9 1.0 CA B:MET59 5.0 24.4 1.0

J.A.Worrall, B.G.Schlarb-Ridley, T.Reda, M.J.Marcaida, R.J.Moorlen, J.Wastl, J.Hirst, D.S.Bendall, B.F.Luisi, C.J.Howe. Modulation of Heme Redox Potential in the Cytochrome C6 Family. J. Am. Chem. Soc. V. 129 9468 2007.
ISSN: ISSN 0002-7863
PubMed: 17625855
DOI: 10.1021/JA072346G