Iron in PDB 2vdc: The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications.

All present enzymatic activity of The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications.:
1.4.1.13;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 66;

Binding sites:

The binding sites of Iron atom in the The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications. (pdb code 2vdc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 66 binding sites of Iron where determined in the The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications., PDB code: 2vdc:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 66 in the The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe2476 b:3.4 occ:1.00 FE1 A:F3S2476 0.0 3.4 1.0 S1 A:F3S2476 2.1 26.8 1.0 SG A:CYS1102 2.1 41.7 1.0 S2 A:F3S2476 2.2 18.6 1.0 S3 A:F3S2476 2.2 16.3 1.0 FE4 A:F3S2476 2.4 3.0 1.0 FE3 A:F3S2476 2.8 8.7 1.0 CB A:CYS1102 2.9 43.7 1.0 CA A:CYS1102 3.6 46.9 1.0 S4 A:F3S2476 3.7 28.8 1.0 N A:MET1104 4.1 53.7 1.0 SG A:CYS1108 4.2 48.2 1.0 N A:ILE1103 4.2 48.1 1.0 C A:CYS1102 4.3 49.0 1.0 SG A:CYS1113 4.4 47.1 1.0 CA A:MET1104 4.6 55.0 1.0 CG1 A:VAL1117 4.6 55.4 1.0 CE A:MET479 4.7 37.3 1.0 CB A:VAL1117 4.7 52.2 1.0 SG A:CYS1118 4.9 54.7 1.0 N A:CYS1102 4.9 47.7 1.0

Iron binding site 2 out of 66 in the The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe2476 b:8.7 occ:1.00 FE3 A:F3S2476 0.0 8.7 1.0 SG A:CYS1113 1.9 47.1 1.0 S3 A:F3S2476 2.0 16.3 1.0 S4 A:F3S2476 2.1 28.8 1.0 S1 A:F3S2476 2.2 26.8 1.0 FE4 A:F3S2476 2.7 3.0 1.0 FE1 A:F3S2476 2.8 3.4 1.0 S2 A:F3S2476 3.4 18.6 1.0 CB A:CYS1113 3.5 49.1 1.0 OE1 J:GLN112 3.9 0.4 1.0 CA A:CYS1113 4.2 44.4 1.0 SG A:CYS1108 4.3 48.2 1.0 CD A:PRO1114 4.4 36.1 1.0 N A:CYS1118 4.5 48.0 1.0 CB A:VAL1117 4.6 52.2 1.0 CD J:GLN112 4.6 0.4 1.0 SG A:CYS1102 4.6 41.7 1.0 NE2 J:GLN112 4.7 0.4 1.0 CG1 A:VAL1105 4.7 45.5 1.0 N A:PRO1114 4.8 35.3 1.0 C A:CYS1113 4.9 41.6 1.0

Iron binding site 3 out of 66 in the The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe2476 b:3.0 occ:1.00 FE4 A:F3S2476 0.0 3.0 1.0 SG A:CYS1108 1.9 48.2 1.0 S1 A:F3S2476 2.1 26.8 1.0 S4 A:F3S2476 2.2 28.8 1.0 S2 A:F3S2476 2.2 18.6 1.0 FE1 A:F3S2476 2.4 3.4 1.0 FE3 A:F3S2476 2.7 8.7 1.0 S3 A:F3S2476 3.3 16.3 1.0 CB A:CYS1108 3.4 39.0 1.0 SG A:CYS1118 3.6 54.7 1.0 CA A:CYS1108 4.1 48.5 1.0 N A:CYS1108 4.2 54.2 1.0 SG A:CYS1113 4.2 47.1 1.0 SG A:CYS1102 4.3 41.7 1.0 CE A:MET479 4.5 37.3 1.0 N A:GLN1107 4.5 52.9 1.0 C A:GLN1107 4.8 54.7 1.0 N A:CYS1118 4.9 48.0 1.0 N A:ARG1106 4.9 55.4 1.0

Iron binding site 4 out of 66 in the The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe2476 b:1.0 occ:1.00 FE1 B:F3S2476 0.0 1.0 1.0 SG B:CYS1102 1.9 38.4 1.0 S3 B:F3S2476 2.1 27.5 1.0 S2 B:F3S2476 2.2 13.6 1.0 S1 B:F3S2476 2.2 26.1 1.0 FE3 B:F3S2476 2.5 1.6 1.0 FE4 B:F3S2476 2.6 2.5 1.0 CB B:CYS1102 2.9 45.9 1.0 CA B:CYS1102 3.6 50.1 1.0 S4 B:F3S2476 3.8 31.4 1.0 N B:ILE1103 4.1 48.2 1.0 SG B:CYS1113 4.3 47.1 1.0 C B:CYS1102 4.3 51.0 1.0 N B:MET1104 4.3 56.9 1.0 SG B:CYS1108 4.4 50.1 1.0 CE B:MET479 4.5 41.1 1.0 CG1 B:VAL1117 4.7 55.9 1.0 CA B:MET1104 4.9 54.6 1.0 N B:CYS1102 4.9 50.9 1.0 CB B:VAL1117 4.9 51.7 1.0

Iron binding site 5 out of 66 in the The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe2476 b:1.6 occ:1.00 FE3 B:F3S2476 0.0 1.6 1.0 S4 B:F3S2476 2.1 31.4 1.0 SG B:CYS1113 2.1 47.1 1.0 S1 B:F3S2476 2.1 26.1 1.0 S3 B:F3S2476 2.2 27.5 1.0 FE4 B:F3S2476 2.5 2.5 1.0 FE1 B:F3S2476 2.5 1.0 1.0 S2 B:F3S2476 3.1 13.6 1.0 CB B:CYS1113 3.5 48.0 1.0 OE1 G:GLN112 4.1 0.4 1.0 SG B:CYS1108 4.2 50.1 1.0 SG B:CYS1102 4.3 38.4 1.0 CA B:CYS1113 4.4 43.9 1.0 CD B:PRO1114 4.6 39.2 1.0 N B:CYS1118 4.6 47.9 1.0 CD G:GLN112 4.8 0.4 1.0 NE2 G:GLN112 4.9 0.4 1.0 CB B:VAL1117 4.9 51.7 1.0 CG1 B:VAL1105 5.0 50.6 1.0 CB B:CYS1118 5.0 55.2 1.0 C B:CYS1113 5.0 43.2 1.0

Iron binding site 6 out of 66 in the The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe2476 b:2.5 occ:1.00 FE4 B:F3S2476 0.0 2.5 1.0 SG B:CYS1108 1.9 50.1 1.0 S2 B:F3S2476 2.1 13.6 1.0 S4 B:F3S2476 2.1 31.4 1.0 S3 B:F3S2476 2.2 27.5 1.0 FE3 B:F3S2476 2.5 1.6 1.0 FE1 B:F3S2476 2.6 1.0 1.0 CB B:CYS1108 3.5 39.5 1.0 S1 B:F3S2476 3.6 26.1 1.0 SG B:CYS1118 4.0 55.9 1.0 N B:CYS1108 4.0 53.5 1.0 CA B:CYS1108 4.1 48.3 1.0 SG B:CYS1102 4.2 38.4 1.0 CB B:CYS1118 4.2 55.2 1.0 SG B:CYS1113 4.2 47.1 1.0 CE B:MET479 4.3 41.1 1.0 N B:GLN1107 4.4 54.6 1.0 C B:GLN1107 4.7 54.8 1.0 N B:ARG1106 4.9 56.5 1.0 CA B:ARG1106 5.0 54.0 1.0 N B:CYS1118 5.0 47.9 1.0

Iron binding site 7 out of 66 in the The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe2476 b:0.0 occ:1.00 FE1 C:F3S2476 0.0 0.0 1.0 S1 C:F3S2476 2.1 0.0 1.0 SG C:CYS1102 2.1 0.0 1.0 S2 C:F3S2476 2.2 0.0 1.0 S3 C:F3S2476 2.2 0.0 1.0 FE4 C:F3S2476 2.4 0.0 1.0 FE3 C:F3S2476 2.8 0.0 1.0 CB C:CYS1102 2.9 0.0 1.0 CA C:CYS1102 3.6 0.0 1.0 S4 C:F3S2476 3.7 0.0 1.0 N C:MET1104 4.1 0.0 1.0 SG C:CYS1108 4.2 0.0 1.0 N C:ILE1103 4.2 0.0 1.0 C C:CYS1102 4.3 0.0 1.0 SG C:CYS1113 4.4 0.0 1.0 CA C:MET1104 4.6 0.0 1.0 CG1 C:VAL1117 4.6 0.0 1.0 CE C:MET479 4.7 0.0 1.0 CB C:VAL1117 4.7 0.0 1.0 SG C:CYS1118 4.9 0.0 1.0 N C:CYS1102 4.9 0.0 1.0

Iron binding site 8 out of 66 in the The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe2476 b:0.0 occ:1.00 FE3 C:F3S2476 0.0 0.0 1.0 SG C:CYS1113 1.9 0.0 1.0 S3 C:F3S2476 2.0 0.0 1.0 S4 C:F3S2476 2.1 0.0 1.0 S1 C:F3S2476 2.2 0.0 1.0 FE4 C:F3S2476 2.7 0.0 1.0 FE1 C:F3S2476 2.8 0.0 1.0 S2 C:F3S2476 3.4 0.0 1.0 CB C:CYS1113 3.5 0.0 1.0 OE1 K:GLN112 3.9 0.4 1.0 CA C:CYS1113 4.2 0.0 1.0 SG C:CYS1108 4.3 0.0 1.0 CD C:PRO1114 4.4 0.0 1.0 N C:CYS1118 4.5 0.0 1.0 CB C:VAL1117 4.6 0.0 1.0 CD K:GLN112 4.6 0.4 1.0 SG C:CYS1102 4.6 0.0 1.0 NE2 K:GLN112 4.7 0.4 1.0 CG1 C:VAL1105 4.7 0.0 1.0 N C:PRO1114 4.8 0.0 1.0 C C:CYS1113 4.9 0.0 1.0

Iron binding site 9 out of 66 in the The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe2476 b:0.0 occ:1.00 FE4 C:F3S2476 0.0 0.0 1.0 SG C:CYS1108 1.9 0.0 1.0 S1 C:F3S2476 2.1 0.0 1.0 S4 C:F3S2476 2.2 0.0 1.0 S2 C:F3S2476 2.2 0.0 1.0 FE1 C:F3S2476 2.4 0.0 1.0 FE3 C:F3S2476 2.7 0.0 1.0 S3 C:F3S2476 3.3 0.0 1.0 CB C:CYS1108 3.4 0.0 1.0 SG C:CYS1118 3.6 0.0 1.0 CA C:CYS1108 4.1 0.0 1.0 N C:CYS1108 4.2 0.0 1.0 SG C:CYS1113 4.2 0.0 1.0 SG C:CYS1102 4.3 0.0 1.0 CE C:MET479 4.5 0.0 1.0 N C:GLN1107 4.5 0.0 1.0 C C:GLN1107 4.8 0.0 1.0 N C:CYS1118 4.9 0.0 1.0 N C:ARG1106 4.9 0.0 1.0

Iron binding site 10 out of 66 in the The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of The 9.5 A Resolution Structure of Glutamate Synthase From Cryo- Electron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications. within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe2476 b:0.0 occ:1.00 FE1 D:F3S2476 0.0 0.0 1.0 SG D:CYS1102 1.9 0.0 1.0 S3 D:F3S2476 2.1 0.0 1.0 S2 D:F3S2476 2.2 0.0 1.0 S1 D:F3S2476 2.2 0.0 1.0 FE3 D:F3S2476 2.5 0.0 1.0 FE4 D:F3S2476 2.6 0.0 1.0 CB D:CYS1102 2.9 0.0 1.0 CA D:CYS1102 3.6 0.0 1.0 S4 D:F3S2476 3.8 0.0 1.0 N D:ILE1103 4.1 0.0 1.0 SG D:CYS1113 4.3 0.0 1.0 C D:CYS1102 4.3 0.0 1.0 N D:MET1104 4.3 0.0 1.0 SG D:CYS1108 4.4 0.0 1.0 CE D:MET479 4.5 0.0 1.0 CG1 D:VAL1117 4.7 0.0 1.0 CA D:MET1104 4.9 0.0 1.0 N D:CYS1102 4.9 0.0 1.0 CB D:VAL1117 4.9 0.0 1.0

M.Cottevieille, E.Larquet, S.Jonic, M.V.Petoukhov, G.Caprini, S.Paravisi, D.I.Svergun, M.A.Vanoni, N.Boisset. The Subnanometer Resolution Structure of the Glutamate Synthase 1.2-Mda Hexamer By Cryoelectron Microscopy and Its Oligomerization Behavior in Solution: Functional Implications. J.Biol.Chem. V. 283 8237 2008.
ISSN: ISSN 0021-9258
PubMed: 18199747
DOI: 10.1074/JBC.M708529200