Atomistry » Iron » PDB 2vm0-2w3g » 2vp1
Atomistry »
  Iron »
    PDB 2vm0-2w3g »
      2vp1 »

Iron in PDB 2vp1: Fe-FUTA2 From Synechocystis PCC6803

Protein crystallography data

The structure of Fe-FUTA2 From Synechocystis PCC6803, PDB code: 2vp1 was solved by A.Badarau, S.J.Firbank, M.J.Banfield, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.21 / 2.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 75.340, 51.600, 100.740, 90.00, 98.50, 90.00
R / Rfree (%) 21.5 / 27.6

Other elements in 2vp1:

The structure of Fe-FUTA2 From Synechocystis PCC6803 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Fe-FUTA2 From Synechocystis PCC6803 (pdb code 2vp1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Fe-FUTA2 From Synechocystis PCC6803, PDB code: 2vp1:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2vp1

Go back to Iron Binding Sites List in 2vp1
Iron binding site 1 out of 2 in the Fe-FUTA2 From Synechocystis PCC6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Fe-FUTA2 From Synechocystis PCC6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1347

b:16.5
occ:1.00
OH A:TYR44 2.0 17.3 1.0
OH A:TYR225 2.0 11.9 1.0
OH A:TYR226 2.1 19.5 1.0
OH A:TYR169 2.1 11.6 1.0
NE2 A:HIS43 2.2 11.8 1.0
CZ A:TYR44 2.9 17.1 1.0
CZ A:TYR226 2.9 18.6 1.0
CE1 A:HIS43 3.1 11.8 1.0
CZ A:TYR225 3.1 12.4 1.0
CZ A:TYR169 3.1 10.9 1.0
CD2 A:HIS43 3.2 12.2 1.0
CE1 A:TYR44 3.2 17.6 1.0
CE2 A:TYR169 3.4 11.7 1.0
CE1 A:TYR225 3.5 12.8 1.0
CE2 A:TYR226 3.5 18.1 1.0
CE1 A:TYR226 3.9 17.8 1.0
NH1 A:ARG129 4.1 15.4 1.0
CE2 A:TYR44 4.1 17.3 1.0
ND1 A:HIS43 4.2 13.1 1.0
CG A:HIS43 4.3 13.3 1.0
NH2 A:ARG129 4.3 13.7 1.0
CE2 A:TYR225 4.4 11.8 1.0
CE1 A:TYR169 4.4 10.1 1.0
ND2 A:ASN223 4.5 13.3 1.0
CD1 A:TYR44 4.6 17.5 1.0
CZ A:ARG129 4.7 13.4 1.0
CD2 A:TYR226 4.8 18.0 1.0
CD2 A:TYR169 4.8 11.3 1.0
CD1 A:TYR225 4.8 11.3 1.0
CG1 A:VAL86 5.0 12.2 1.0

Iron binding site 2 out of 2 in 2vp1

Go back to Iron Binding Sites List in 2vp1
Iron binding site 2 out of 2 in the Fe-FUTA2 From Synechocystis PCC6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Fe-FUTA2 From Synechocystis PCC6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1347

b:16.3
occ:1.00
OH B:TYR225 1.9 14.3 1.0
OH B:TYR226 2.1 15.1 1.0
OH B:TYR169 2.2 19.0 1.0
OH B:TYR44 2.2 22.0 1.0
NE2 B:HIS43 2.2 21.1 1.0
CE1 B:HIS43 3.0 19.4 1.0
CZ B:TYR226 3.1 13.7 1.0
CZ B:TYR169 3.1 18.0 1.0
CZ B:TYR225 3.1 15.2 1.0
CZ B:TYR44 3.2 21.4 1.0
CE2 B:TYR169 3.2 18.4 1.0
CD2 B:HIS43 3.3 20.6 1.0
CE1 B:TYR44 3.4 21.2 1.0
CE1 B:TYR225 3.6 13.9 1.0
CE2 B:TYR226 3.7 14.2 1.0
CE1 B:TYR226 4.1 12.7 1.0
NH2 B:ARG129 4.1 19.3 1.0
NH1 B:ARG129 4.1 21.1 1.0
ND1 B:HIS43 4.2 19.7 1.0
CG B:HIS43 4.3 20.8 1.0
CE2 B:TYR225 4.3 15.6 1.0
ND2 B:ASN223 4.4 12.6 1.0
CE1 B:TYR169 4.4 17.2 1.0
CE2 B:TYR44 4.4 20.9 1.0
CD2 B:TYR169 4.6 17.7 1.0
CZ B:ARG129 4.6 19.8 1.0
CD1 B:TYR44 4.8 22.5 1.0
CD2 B:TYR226 4.9 14.5 1.0
CD1 B:TYR225 5.0 13.1 1.0

Reference:

A.Badarau, S.J.Firbank, K.J.Waldron, S.Yanagisawa, N.J.Robinson, M.J.Banfield, C.Dennison. FUTA2 Is A Ferric Binding Protein From Synechocystis Pcc 6803. J.Biol.Chem. V. 283 12520 2008.
ISSN: ISSN 0021-9258
PubMed: 18252722
DOI: 10.1074/JBC.M709907200
Page generated: Sun Dec 13 14:54:11 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy