Iron in PDB 2vr0: Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor
Enzymatic activity of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor
All present enzymatic activity of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor:
1.7.2.2;
Protein crystallography data
The structure of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor, PDB code: 2vr0
was solved by
M.L.Rodrigues,
M.Archer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
154.30 /
2.80
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
80.102,
189.115,
263.460,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
22 /
26.1
|
Other elements in 2vr0:
The structure of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
28;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor
(pdb code 2vr0). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the
Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor, PDB code: 2vr0:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 28 in 2vr0
Go back to
Iron Binding Sites List in 2vr0
Iron binding site 1 out
of 28 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:22.2
occ:1.00
|
FE
|
A:HEC1001
|
0.0
|
22.2
|
1.0
|
NB
|
A:HEC1001
|
2.0
|
22.0
|
1.0
|
NA
|
A:HEC1001
|
2.0
|
23.6
|
1.0
|
ND
|
A:HEC1001
|
2.1
|
21.0
|
1.0
|
NC
|
A:HEC1001
|
2.1
|
21.8
|
1.0
|
NZ
|
A:LYS151
|
2.3
|
24.9
|
1.0
|
O
|
A:HOH2023
|
2.9
|
12.6
|
1.0
|
C4A
|
A:HEC1001
|
3.0
|
24.2
|
1.0
|
C4B
|
A:HEC1001
|
3.0
|
22.5
|
1.0
|
C1B
|
A:HEC1001
|
3.0
|
23.6
|
1.0
|
C1A
|
A:HEC1001
|
3.0
|
24.2
|
1.0
|
C4D
|
A:HEC1001
|
3.1
|
21.8
|
1.0
|
C1C
|
A:HEC1001
|
3.1
|
21.1
|
1.0
|
C1D
|
A:HEC1001
|
3.1
|
21.0
|
1.0
|
C4C
|
A:HEC1001
|
3.2
|
20.0
|
1.0
|
CE
|
A:LYS151
|
3.2
|
24.8
|
1.0
|
CHB
|
A:HEC1001
|
3.4
|
23.6
|
1.0
|
CHC
|
A:HEC1001
|
3.4
|
21.6
|
1.0
|
CHA
|
A:HEC1001
|
3.4
|
21.8
|
1.0
|
CHD
|
A:HEC1001
|
3.5
|
21.0
|
1.0
|
NE2
|
A:HIS298
|
4.2
|
24.1
|
1.0
|
C3B
|
A:HEC1001
|
4.2
|
24.0
|
1.0
|
C3A
|
A:HEC1001
|
4.2
|
24.4
|
1.0
|
C2B
|
A:HEC1001
|
4.2
|
24.4
|
1.0
|
C2A
|
A:HEC1001
|
4.2
|
25.1
|
1.0
|
C3D
|
A:HEC1001
|
4.3
|
21.5
|
1.0
|
C2C
|
A:HEC1001
|
4.3
|
19.0
|
1.0
|
C2D
|
A:HEC1001
|
4.3
|
20.5
|
1.0
|
C3C
|
A:HEC1001
|
4.4
|
19.3
|
1.0
|
O
|
A:HOH2010
|
4.4
|
7.4
|
1.0
|
CD
|
A:LYS151
|
4.6
|
24.3
|
1.0
|
CE1
|
A:HIS298
|
5.0
|
24.2
|
1.0
|
|
Iron binding site 2 out
of 28 in 2vr0
Go back to
Iron Binding Sites List in 2vr0
Iron binding site 2 out
of 28 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:22.9
occ:1.00
|
FE
|
A:HEC1002
|
0.0
|
22.9
|
1.0
|
NC
|
A:HEC1002
|
2.0
|
22.5
|
1.0
|
NE2
|
A:HIS335
|
2.0
|
22.3
|
1.0
|
NB
|
A:HEC1002
|
2.0
|
21.8
|
1.0
|
NE2
|
A:HIS191
|
2.0
|
24.6
|
1.0
|
ND
|
A:HEC1002
|
2.0
|
23.0
|
1.0
|
NA
|
A:HEC1002
|
2.0
|
22.9
|
1.0
|
CE1
|
A:HIS191
|
2.8
|
25.0
|
1.0
|
CE1
|
A:HIS335
|
2.9
|
22.4
|
1.0
|
C4C
|
A:HEC1002
|
3.0
|
22.9
|
1.0
|
C1C
|
A:HEC1002
|
3.0
|
22.1
|
1.0
|
C1B
|
A:HEC1002
|
3.0
|
22.1
|
1.0
|
C4B
|
A:HEC1002
|
3.0
|
21.7
|
1.0
|
C4D
|
A:HEC1002
|
3.1
|
24.2
|
1.0
|
C4A
|
A:HEC1002
|
3.1
|
21.7
|
1.0
|
C1D
|
A:HEC1002
|
3.1
|
24.0
|
1.0
|
C1A
|
A:HEC1002
|
3.1
|
23.3
|
1.0
|
CD2
|
A:HIS335
|
3.1
|
23.2
|
1.0
|
CD2
|
A:HIS191
|
3.2
|
24.3
|
1.0
|
CHB
|
A:HEC1002
|
3.4
|
21.9
|
1.0
|
CHD
|
A:HEC1002
|
3.4
|
23.0
|
1.0
|
CHC
|
A:HEC1002
|
3.4
|
21.6
|
1.0
|
CHA
|
A:HEC1002
|
3.4
|
23.0
|
1.0
|
ND1
|
A:HIS191
|
4.0
|
25.3
|
1.0
|
ND1
|
A:HIS335
|
4.0
|
22.5
|
1.0
|
CG
|
A:HIS335
|
4.2
|
23.0
|
1.0
|
CG
|
A:HIS191
|
4.2
|
24.5
|
1.0
|
C3C
|
A:HEC1002
|
4.2
|
22.3
|
1.0
|
C2C
|
A:HEC1002
|
4.2
|
22.4
|
1.0
|
C2B
|
A:HEC1002
|
4.3
|
21.4
|
1.0
|
C3B
|
A:HEC1002
|
4.3
|
22.0
|
1.0
|
C3A
|
A:HEC1002
|
4.3
|
22.6
|
1.0
|
C2A
|
A:HEC1002
|
4.3
|
22.7
|
1.0
|
C3D
|
A:HEC1002
|
4.3
|
24.6
|
1.0
|
C2D
|
A:HEC1002
|
4.3
|
23.7
|
1.0
|
CE
|
A:MET321
|
4.4
|
23.3
|
1.0
|
|
Iron binding site 3 out
of 28 in 2vr0
Go back to
Iron Binding Sites List in 2vr0
Iron binding site 3 out
of 28 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:13.0
occ:1.00
|
FE
|
A:HEC1003
|
0.0
|
13.0
|
1.0
|
NE2
|
A:HIS121
|
1.9
|
23.8
|
1.0
|
ND
|
A:HEC1003
|
1.9
|
11.3
|
1.0
|
NA
|
A:HEC1003
|
2.0
|
12.5
|
1.0
|
NC
|
A:HEC1003
|
2.0
|
13.0
|
1.0
|
NB
|
A:HEC1003
|
2.0
|
12.4
|
1.0
|
NE2
|
A:HIS233
|
2.3
|
23.0
|
1.0
|
CD2
|
A:HIS121
|
2.9
|
22.4
|
1.0
|
C1D
|
A:HEC1003
|
2.9
|
13.6
|
1.0
|
CE1
|
A:HIS121
|
2.9
|
23.7
|
1.0
|
C4D
|
A:HEC1003
|
2.9
|
12.7
|
1.0
|
C4C
|
A:HEC1003
|
3.0
|
13.6
|
1.0
|
C1B
|
A:HEC1003
|
3.0
|
13.8
|
1.0
|
C4A
|
A:HEC1003
|
3.0
|
12.5
|
1.0
|
C1A
|
A:HEC1003
|
3.0
|
13.1
|
1.0
|
C1C
|
A:HEC1003
|
3.1
|
13.5
|
1.0
|
C4B
|
A:HEC1003
|
3.1
|
11.7
|
1.0
|
CD2
|
A:HIS233
|
3.2
|
23.3
|
1.0
|
CE1
|
A:HIS233
|
3.3
|
22.6
|
1.0
|
CHD
|
A:HEC1003
|
3.3
|
13.3
|
1.0
|
CHA
|
A:HEC1003
|
3.4
|
13.5
|
1.0
|
CHB
|
A:HEC1003
|
3.4
|
13.1
|
1.0
|
CHC
|
A:HEC1003
|
3.5
|
13.3
|
1.0
|
ND1
|
A:HIS121
|
4.0
|
22.9
|
1.0
|
CG
|
A:HIS121
|
4.0
|
22.7
|
1.0
|
C2D
|
A:HEC1003
|
4.2
|
13.7
|
1.0
|
C3D
|
A:HEC1003
|
4.2
|
14.0
|
1.0
|
C3A
|
A:HEC1003
|
4.2
|
14.3
|
1.0
|
C2B
|
A:HEC1003
|
4.2
|
12.6
|
1.0
|
C3C
|
A:HEC1003
|
4.3
|
13.2
|
1.0
|
C2A
|
A:HEC1003
|
4.3
|
14.4
|
1.0
|
C2C
|
A:HEC1003
|
4.3
|
12.5
|
1.0
|
C3B
|
A:HEC1003
|
4.3
|
11.2
|
1.0
|
CG
|
A:HIS233
|
4.4
|
24.0
|
1.0
|
ND1
|
A:HIS233
|
4.4
|
23.1
|
1.0
|
CMD
|
A:HEC1001
|
4.9
|
20.5
|
1.0
|
|
Iron binding site 4 out
of 28 in 2vr0
Go back to
Iron Binding Sites List in 2vr0
Iron binding site 4 out
of 28 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1004
b:7.0
occ:1.00
|
FE
|
A:HEC1004
|
0.0
|
7.0
|
1.0
|
NA
|
A:HEC1004
|
1.9
|
4.4
|
1.0
|
NB
|
A:HEC1004
|
2.0
|
6.9
|
1.0
|
ND
|
A:HEC1004
|
2.0
|
3.9
|
1.0
|
NC
|
A:HEC1004
|
2.0
|
6.2
|
1.0
|
NE2
|
A:HIS434
|
2.1
|
24.1
|
1.0
|
NE2
|
A:HIS320
|
2.2
|
22.4
|
1.0
|
C4A
|
A:HEC1004
|
2.9
|
6.0
|
1.0
|
C1B
|
A:HEC1004
|
3.0
|
9.3
|
1.0
|
CE1
|
A:HIS434
|
3.0
|
23.7
|
1.0
|
C1A
|
A:HEC1004
|
3.0
|
4.6
|
1.0
|
C4C
|
A:HEC1004
|
3.0
|
7.4
|
1.0
|
C1D
|
A:HEC1004
|
3.0
|
5.2
|
1.0
|
C4D
|
A:HEC1004
|
3.0
|
5.3
|
1.0
|
CD2
|
A:HIS320
|
3.1
|
22.9
|
1.0
|
C4B
|
A:HEC1004
|
3.1
|
9.2
|
1.0
|
C1C
|
A:HEC1004
|
3.1
|
8.2
|
1.0
|
CHB
|
A:HEC1004
|
3.3
|
7.7
|
1.0
|
CE1
|
A:HIS320
|
3.3
|
21.7
|
1.0
|
CD2
|
A:HIS434
|
3.3
|
23.9
|
1.0
|
CHD
|
A:HEC1004
|
3.3
|
7.4
|
1.0
|
CHA
|
A:HEC1004
|
3.4
|
5.5
|
1.0
|
CHC
|
A:HEC1004
|
3.5
|
9.2
|
1.0
|
ND1
|
A:HIS434
|
4.1
|
22.4
|
1.0
|
C3A
|
A:HEC1004
|
4.2
|
6.2
|
1.0
|
C2A
|
A:HEC1004
|
4.2
|
6.8
|
1.0
|
C2B
|
A:HEC1004
|
4.2
|
10.3
|
1.0
|
C3C
|
A:HEC1004
|
4.2
|
7.9
|
1.0
|
C2D
|
A:HEC1004
|
4.3
|
5.4
|
1.0
|
CG
|
A:HIS320
|
4.3
|
23.3
|
1.0
|
C3D
|
A:HEC1004
|
4.3
|
7.1
|
1.0
|
C3B
|
A:HEC1004
|
4.3
|
9.7
|
1.0
|
C2C
|
A:HEC1004
|
4.3
|
7.4
|
1.0
|
ND1
|
A:HIS320
|
4.3
|
22.4
|
1.0
|
CG
|
A:HIS434
|
4.3
|
23.6
|
1.0
|
|
Iron binding site 5 out
of 28 in 2vr0
Go back to
Iron Binding Sites List in 2vr0
Iron binding site 5 out
of 28 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1005
b:14.7
occ:1.00
|
FE
|
A:HEC1005
|
0.0
|
14.7
|
1.0
|
NA
|
A:HEC1005
|
1.9
|
15.6
|
1.0
|
NE2
|
A:HIS353
|
1.9
|
21.9
|
1.0
|
NC
|
A:HEC1005
|
2.0
|
15.3
|
1.0
|
NB
|
A:HEC1005
|
2.1
|
15.5
|
1.0
|
NE2
|
A:HIS309
|
2.1
|
20.9
|
1.0
|
ND
|
A:HEC1005
|
2.1
|
17.6
|
1.0
|
CE1
|
A:HIS353
|
2.8
|
22.6
|
1.0
|
C4A
|
A:HEC1005
|
3.0
|
15.8
|
1.0
|
C1A
|
A:HEC1005
|
3.0
|
16.9
|
1.0
|
C4C
|
A:HEC1005
|
3.0
|
14.3
|
1.0
|
C1B
|
A:HEC1005
|
3.0
|
15.1
|
1.0
|
CE1
|
A:HIS309
|
3.0
|
22.4
|
1.0
|
C1C
|
A:HEC1005
|
3.0
|
15.4
|
1.0
|
CD2
|
A:HIS353
|
3.1
|
22.9
|
1.0
|
C4D
|
A:HEC1005
|
3.1
|
17.7
|
1.0
|
C1D
|
A:HEC1005
|
3.1
|
17.2
|
1.0
|
C4B
|
A:HEC1005
|
3.1
|
14.2
|
1.0
|
CD2
|
A:HIS309
|
3.1
|
22.4
|
1.0
|
CHB
|
A:HEC1005
|
3.3
|
15.3
|
1.0
|
CHD
|
A:HEC1005
|
3.4
|
16.3
|
1.0
|
CHA
|
A:HEC1005
|
3.4
|
16.6
|
1.0
|
CHC
|
A:HEC1005
|
3.5
|
14.6
|
1.0
|
ND1
|
A:HIS353
|
3.9
|
21.9
|
1.0
|
CG
|
A:HIS353
|
4.1
|
22.7
|
1.0
|
ND1
|
A:HIS309
|
4.2
|
22.5
|
1.0
|
C3A
|
A:HEC1005
|
4.2
|
16.2
|
1.0
|
C2A
|
A:HEC1005
|
4.2
|
16.9
|
1.0
|
C2C
|
A:HEC1005
|
4.2
|
15.1
|
1.0
|
C3C
|
A:HEC1005
|
4.2
|
14.9
|
1.0
|
CG
|
A:HIS309
|
4.3
|
23.1
|
1.0
|
C2B
|
A:HEC1005
|
4.3
|
15.0
|
1.0
|
C3B
|
A:HEC1005
|
4.3
|
14.6
|
1.0
|
C3D
|
A:HEC1005
|
4.3
|
17.8
|
1.0
|
C2D
|
A:HEC1005
|
4.3
|
17.0
|
1.0
|
CBC
|
A:HEC1004
|
5.0
|
11.8
|
1.0
|
|
Iron binding site 6 out
of 28 in 2vr0
Go back to
Iron Binding Sites List in 2vr0
Iron binding site 6 out
of 28 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1001
b:15.2
occ:1.00
|
FE
|
B:HEC1001
|
0.0
|
15.2
|
1.0
|
NC
|
B:HEC1001
|
2.0
|
14.6
|
1.0
|
NA
|
B:HEC1001
|
2.0
|
13.4
|
1.0
|
NB
|
B:HEC1001
|
2.1
|
15.0
|
1.0
|
O
|
B:HOH2041
|
2.1
|
21.9
|
1.0
|
ND
|
B:HEC1001
|
2.1
|
14.3
|
1.0
|
NZ
|
B:LYS151
|
2.2
|
23.7
|
1.0
|
C1A
|
B:HEC1001
|
3.0
|
13.4
|
1.0
|
C1C
|
B:HEC1001
|
3.0
|
14.2
|
1.0
|
C4B
|
B:HEC1001
|
3.0
|
15.2
|
1.0
|
C4C
|
B:HEC1001
|
3.1
|
14.1
|
1.0
|
C1D
|
B:HEC1001
|
3.1
|
12.8
|
1.0
|
C4D
|
B:HEC1001
|
3.1
|
12.8
|
1.0
|
C4A
|
B:HEC1001
|
3.1
|
13.4
|
1.0
|
C1B
|
B:HEC1001
|
3.1
|
16.6
|
1.0
|
CE
|
B:LYS151
|
3.2
|
24.8
|
1.0
|
CHC
|
B:HEC1001
|
3.4
|
14.7
|
1.0
|
CHD
|
B:HEC1001
|
3.4
|
13.1
|
1.0
|
CHA
|
B:HEC1001
|
3.4
|
11.8
|
1.0
|
CHB
|
B:HEC1001
|
3.5
|
14.0
|
1.0
|
O
|
B:HOH2017
|
4.1
|
8.0
|
1.0
|
C2C
|
B:HEC1001
|
4.3
|
13.7
|
1.0
|
C2A
|
B:HEC1001
|
4.3
|
14.1
|
1.0
|
C3B
|
B:HEC1001
|
4.3
|
15.8
|
1.0
|
C3C
|
B:HEC1001
|
4.3
|
14.8
|
1.0
|
C2D
|
B:HEC1001
|
4.3
|
9.5
|
1.0
|
C3A
|
B:HEC1001
|
4.3
|
13.5
|
1.0
|
C2B
|
B:HEC1001
|
4.3
|
17.0
|
1.0
|
C3D
|
B:HEC1001
|
4.3
|
10.5
|
1.0
|
CD
|
B:LYS151
|
4.5
|
25.4
|
1.0
|
CE1
|
B:HIS298
|
4.6
|
27.0
|
1.0
|
NE2
|
B:HIS298
|
4.6
|
26.6
|
1.0
|
|
Iron binding site 7 out
of 28 in 2vr0
Go back to
Iron Binding Sites List in 2vr0
Iron binding site 7 out
of 28 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1002
b:21.2
occ:1.00
|
FE
|
B:HEC1002
|
0.0
|
21.2
|
1.0
|
NC
|
B:HEC1002
|
2.0
|
22.0
|
1.0
|
NE2
|
B:HIS191
|
2.0
|
21.6
|
1.0
|
NB
|
B:HEC1002
|
2.0
|
21.8
|
1.0
|
ND
|
B:HEC1002
|
2.1
|
20.1
|
1.0
|
NE2
|
B:HIS335
|
2.1
|
22.4
|
1.0
|
NA
|
B:HEC1002
|
2.1
|
22.1
|
1.0
|
CE1
|
B:HIS191
|
3.0
|
21.8
|
1.0
|
C1C
|
B:HEC1002
|
3.0
|
22.3
|
1.0
|
CD2
|
B:HIS191
|
3.0
|
21.9
|
1.0
|
CD2
|
B:HIS335
|
3.0
|
22.6
|
1.0
|
C4C
|
B:HEC1002
|
3.0
|
21.4
|
1.0
|
C4B
|
B:HEC1002
|
3.0
|
22.5
|
1.0
|
C4D
|
B:HEC1002
|
3.1
|
19.8
|
1.0
|
C1A
|
B:HEC1002
|
3.1
|
22.3
|
1.0
|
C1B
|
B:HEC1002
|
3.1
|
22.4
|
1.0
|
C1D
|
B:HEC1002
|
3.1
|
19.9
|
1.0
|
C4A
|
B:HEC1002
|
3.1
|
22.1
|
1.0
|
CE1
|
B:HIS335
|
3.1
|
22.2
|
1.0
|
CHC
|
B:HEC1002
|
3.3
|
22.5
|
1.0
|
CHD
|
B:HEC1002
|
3.4
|
20.3
|
1.0
|
CHA
|
B:HEC1002
|
3.4
|
20.4
|
1.0
|
CHB
|
B:HEC1002
|
3.5
|
22.6
|
1.0
|
ND1
|
B:HIS191
|
4.1
|
21.9
|
1.0
|
CG
|
B:HIS191
|
4.1
|
22.6
|
1.0
|
CG
|
B:HIS335
|
4.2
|
22.7
|
1.0
|
C3C
|
B:HEC1002
|
4.2
|
21.8
|
1.0
|
C2C
|
B:HEC1002
|
4.2
|
21.6
|
1.0
|
ND1
|
B:HIS335
|
4.2
|
22.2
|
1.0
|
C3B
|
B:HEC1002
|
4.3
|
22.9
|
1.0
|
C2A
|
B:HEC1002
|
4.3
|
23.7
|
1.0
|
C2B
|
B:HEC1002
|
4.3
|
22.6
|
1.0
|
C3D
|
B:HEC1002
|
4.3
|
19.2
|
1.0
|
C3A
|
B:HEC1002
|
4.3
|
23.3
|
1.0
|
C2D
|
B:HEC1002
|
4.3
|
18.9
|
1.0
|
CE
|
B:MET321
|
4.6
|
20.4
|
1.0
|
|
Iron binding site 8 out
of 28 in 2vr0
Go back to
Iron Binding Sites List in 2vr0
Iron binding site 8 out
of 28 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1003
b:7.0
occ:1.00
|
FE
|
B:HEC1003
|
0.0
|
7.0
|
1.0
|
NC
|
B:HEC1003
|
1.9
|
4.7
|
1.0
|
NE2
|
B:HIS121
|
2.0
|
22.1
|
1.0
|
NA
|
B:HEC1003
|
2.0
|
7.5
|
1.0
|
NB
|
B:HEC1003
|
2.0
|
5.7
|
1.0
|
ND
|
B:HEC1003
|
2.1
|
5.1
|
1.0
|
NE2
|
B:HIS233
|
2.1
|
24.1
|
1.0
|
C4C
|
B:HEC1003
|
2.9
|
6.1
|
1.0
|
CE1
|
B:HIS233
|
2.9
|
24.9
|
1.0
|
CE1
|
B:HIS121
|
2.9
|
22.0
|
1.0
|
C1B
|
B:HEC1003
|
3.0
|
7.1
|
1.0
|
C4A
|
B:HEC1003
|
3.0
|
9.6
|
1.0
|
CD2
|
B:HIS121
|
3.0
|
22.4
|
1.0
|
C1D
|
B:HEC1003
|
3.0
|
5.7
|
1.0
|
C1C
|
B:HEC1003
|
3.0
|
5.2
|
1.0
|
C1A
|
B:HEC1003
|
3.1
|
8.6
|
1.0
|
C4B
|
B:HEC1003
|
3.1
|
5.7
|
1.0
|
C4D
|
B:HEC1003
|
3.2
|
6.3
|
1.0
|
CD2
|
B:HIS233
|
3.2
|
23.3
|
1.0
|
CHD
|
B:HEC1003
|
3.2
|
7.0
|
1.0
|
CHB
|
B:HEC1003
|
3.3
|
9.0
|
1.0
|
CHC
|
B:HEC1003
|
3.5
|
6.3
|
1.0
|
CHA
|
B:HEC1003
|
3.5
|
7.8
|
1.0
|
ND1
|
B:HIS121
|
4.0
|
22.4
|
1.0
|
CG
|
B:HIS121
|
4.1
|
22.5
|
1.0
|
ND1
|
B:HIS233
|
4.1
|
25.2
|
1.0
|
C3C
|
B:HEC1003
|
4.1
|
5.1
|
1.0
|
C2C
|
B:HEC1003
|
4.2
|
4.5
|
1.0
|
C2B
|
B:HEC1003
|
4.2
|
6.0
|
1.0
|
C3A
|
B:HEC1003
|
4.2
|
9.0
|
1.0
|
C2A
|
B:HEC1003
|
4.2
|
9.5
|
1.0
|
CG
|
B:HIS233
|
4.3
|
23.4
|
1.0
|
C2D
|
B:HEC1003
|
4.3
|
5.0
|
1.0
|
C3B
|
B:HEC1003
|
4.3
|
6.0
|
1.0
|
C3D
|
B:HEC1003
|
4.4
|
5.8
|
1.0
|
O
|
B:HOH2028
|
4.9
|
9.7
|
1.0
|
|
Iron binding site 9 out
of 28 in 2vr0
Go back to
Iron Binding Sites List in 2vr0
Iron binding site 9 out
of 28 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1004
b:3.0
occ:1.00
|
FE
|
B:HEC1004
|
0.0
|
3.0
|
1.0
|
NC
|
B:HEC1004
|
1.9
|
2.8
|
1.0
|
NB
|
B:HEC1004
|
2.0
|
2.0
|
1.0
|
NE2
|
B:HIS434
|
2.0
|
17.8
|
1.0
|
ND
|
B:HEC1004
|
2.0
|
2.0
|
1.0
|
NA
|
B:HEC1004
|
2.1
|
3.5
|
1.0
|
NE2
|
B:HIS320
|
2.1
|
20.1
|
1.0
|
CE1
|
B:HIS434
|
2.8
|
17.2
|
1.0
|
C4C
|
B:HEC1004
|
2.9
|
3.6
|
1.0
|
C1D
|
B:HEC1004
|
2.9
|
2.1
|
1.0
|
C1C
|
B:HEC1004
|
3.0
|
2.2
|
1.0
|
C1B
|
B:HEC1004
|
3.0
|
3.6
|
1.0
|
C4B
|
B:HEC1004
|
3.0
|
4.8
|
1.0
|
C4A
|
B:HEC1004
|
3.1
|
5.8
|
1.0
|
CD2
|
B:HIS320
|
3.1
|
21.2
|
1.0
|
CE1
|
B:HIS320
|
3.1
|
19.4
|
1.0
|
C4D
|
B:HEC1004
|
3.2
|
2.0
|
1.0
|
CD2
|
B:HIS434
|
3.2
|
19.1
|
1.0
|
C1A
|
B:HEC1004
|
3.2
|
4.2
|
1.0
|
CHD
|
B:HEC1004
|
3.2
|
3.5
|
1.0
|
CHB
|
B:HEC1004
|
3.3
|
5.6
|
1.0
|
CHC
|
B:HEC1004
|
3.4
|
3.4
|
1.0
|
CHA
|
B:HEC1004
|
3.6
|
3.4
|
1.0
|
ND1
|
B:HIS434
|
4.0
|
16.3
|
1.0
|
C3C
|
B:HEC1004
|
4.1
|
3.3
|
1.0
|
C2C
|
B:HEC1004
|
4.2
|
2.5
|
1.0
|
CG
|
B:HIS434
|
4.2
|
19.5
|
1.0
|
ND1
|
B:HIS320
|
4.2
|
20.1
|
1.0
|
C2D
|
B:HEC1004
|
4.2
|
2.9
|
1.0
|
CG
|
B:HIS320
|
4.3
|
21.3
|
1.0
|
C2B
|
B:HEC1004
|
4.3
|
3.9
|
1.0
|
C3B
|
B:HEC1004
|
4.3
|
5.4
|
1.0
|
C3D
|
B:HEC1004
|
4.3
|
4.2
|
1.0
|
C3A
|
B:HEC1004
|
4.4
|
5.7
|
1.0
|
C2A
|
B:HEC1004
|
4.4
|
4.0
|
1.0
|
CB
|
B:SER430
|
4.9
|
24.1
|
1.0
|
|
Iron binding site 10 out
of 28 in 2vr0
Go back to
Iron Binding Sites List in 2vr0
Iron binding site 10 out
of 28 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex Bound to the Hqno Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1005
b:17.7
occ:1.00
|
FE
|
B:HEC1005
|
0.0
|
17.7
|
1.0
|
NA
|
B:HEC1005
|
2.0
|
18.0
|
1.0
|
NE2
|
B:HIS353
|
2.0
|
21.2
|
1.0
|
NC
|
B:HEC1005
|
2.0
|
18.1
|
1.0
|
NB
|
B:HEC1005
|
2.0
|
17.6
|
1.0
|
NE2
|
B:HIS309
|
2.0
|
23.1
|
1.0
|
ND
|
B:HEC1005
|
2.1
|
18.0
|
1.0
|
CE1
|
B:HIS353
|
2.8
|
22.0
|
1.0
|
C4A
|
B:HEC1005
|
3.0
|
19.2
|
1.0
|
C1C
|
B:HEC1005
|
3.0
|
18.0
|
1.0
|
C1A
|
B:HEC1005
|
3.0
|
18.7
|
1.0
|
C4C
|
B:HEC1005
|
3.0
|
18.1
|
1.0
|
CD2
|
B:HIS309
|
3.0
|
23.8
|
1.0
|
C1B
|
B:HEC1005
|
3.0
|
16.8
|
1.0
|
CE1
|
B:HIS309
|
3.0
|
23.5
|
1.0
|
C4B
|
B:HEC1005
|
3.1
|
17.9
|
1.0
|
CD2
|
B:HIS353
|
3.1
|
22.5
|
1.0
|
C4D
|
B:HEC1005
|
3.1
|
17.5
|
1.0
|
C1D
|
B:HEC1005
|
3.1
|
17.8
|
1.0
|
CHB
|
B:HEC1005
|
3.4
|
18.0
|
1.0
|
CHC
|
B:HEC1005
|
3.4
|
18.2
|
1.0
|
CHA
|
B:HEC1005
|
3.4
|
17.2
|
1.0
|
CHD
|
B:HEC1005
|
3.4
|
17.6
|
1.0
|
ND1
|
B:HIS353
|
4.0
|
21.9
|
1.0
|
CG
|
B:HIS353
|
4.1
|
22.6
|
1.0
|
ND1
|
B:HIS309
|
4.1
|
22.9
|
1.0
|
CG
|
B:HIS309
|
4.2
|
23.8
|
1.0
|
C2C
|
B:HEC1005
|
4.2
|
17.9
|
1.0
|
C3A
|
B:HEC1005
|
4.2
|
19.5
|
1.0
|
C3C
|
B:HEC1005
|
4.2
|
18.9
|
1.0
|
C2A
|
B:HEC1005
|
4.2
|
19.8
|
1.0
|
C2B
|
B:HEC1005
|
4.2
|
17.3
|
1.0
|
C3B
|
B:HEC1005
|
4.3
|
17.5
|
1.0
|
C3D
|
B:HEC1005
|
4.3
|
17.9
|
1.0
|
C2D
|
B:HEC1005
|
4.3
|
17.1
|
1.0
|
CBC
|
B:HEC1004
|
4.8
|
9.3
|
1.0
|
|
Reference:
M.L.Rodrigues,
K.A.Scott,
M.S.P.Sansom,
I.A.C.Pereira,
M.Archer.
Quinol Oxidation By C-Type Cytochromes: Structural Characterization of the Menaquinol Binding Site of Nrfha. J.Mol.Biol. V. 381 341 2008.
ISSN: ISSN 0022-2836
PubMed: 18597779
DOI: 10.1016/J.JMB.2008.05.066
Page generated: Sun Aug 4 03:06:14 2024
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