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Iron in PDB 2vv6: Bjfixlh in Ferric Form

Enzymatic activity of Bjfixlh in Ferric Form

All present enzymatic activity of Bjfixlh in Ferric Form:
2.7.13.3;

Protein crystallography data

The structure of Bjfixlh in Ferric Form, PDB code: 2vv6 was solved by R.A.Ayers, K.Moffat, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.72 / 1.50
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 48.803, 50.002, 58.999, 73.68, 70.36, 72.33
R / Rfree (%) 18.2 / 21.1

Other elements in 2vv6:

The structure of Bjfixlh in Ferric Form also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Sodium (Na) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Bjfixlh in Ferric Form (pdb code 2vv6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Bjfixlh in Ferric Form, PDB code: 2vv6:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 2vv6

Go back to Iron Binding Sites List in 2vv6
Iron binding site 1 out of 4 in the Bjfixlh in Ferric Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Bjfixlh in Ferric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1258

b:13.4
occ:1.00
FE A:HEM1258 0.0 13.4 1.0
NA A:HEM1258 2.0 12.7 1.0
ND A:HEM1258 2.1 13.0 1.0
NC A:HEM1258 2.1 11.8 1.0
NB A:HEM1258 2.1 12.4 1.0
NE2 A:HIS200 2.1 21.5 1.0
C4A A:HEM1258 3.0 15.4 1.0
C1A A:HEM1258 3.0 14.5 1.0
C1B A:HEM1258 3.1 13.2 1.0
C1D A:HEM1258 3.1 12.0 1.0
C4D A:HEM1258 3.1 12.9 1.0
C1C A:HEM1258 3.1 13.4 1.0
CD2 A:HIS200 3.1 21.2 1.0
C4C A:HEM1258 3.1 13.1 1.0
CE1 A:HIS200 3.1 23.4 1.0
C4B A:HEM1258 3.1 12.2 1.0
CHB A:HEM1258 3.4 15.6 1.0
CHA A:HEM1258 3.4 15.1 1.0
CHD A:HEM1258 3.5 12.4 1.0
CHC A:HEM1258 3.5 13.3 1.0
CD2 A:LEU236 4.1 21.4 1.0
ND1 A:HIS200 4.2 21.2 1.0
CG A:HIS200 4.2 21.0 1.0
C3A A:HEM1258 4.3 17.1 1.0
C2A A:HEM1258 4.3 17.3 1.0
C2B A:HEM1258 4.3 12.0 1.0
C2D A:HEM1258 4.3 12.9 1.0
C3D A:HEM1258 4.3 13.4 1.0
C2C A:HEM1258 4.3 12.5 1.0
C3C A:HEM1258 4.3 13.0 1.0
C3B A:HEM1258 4.4 11.2 1.0
CD1 A:ILE238 4.4 22.7 1.0
CE A:MET192 4.8 21.9 1.0

Iron binding site 2 out of 4 in 2vv6

Go back to Iron Binding Sites List in 2vv6
Iron binding site 2 out of 4 in the Bjfixlh in Ferric Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Bjfixlh in Ferric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1259

b:4.0
occ:0.50
FE B:HEM1259 0.0 4.0 0.5
NE2 B:HIS200 2.0 20.1 1.0
NA B:HEM1259 2.1 2.0 0.5
ND B:HEM1259 2.1 4.9 0.5
NC B:HEM1259 2.1 2.3 0.5
NB B:HEM1259 2.1 5.6 0.5
CE1 B:HIS200 3.0 23.1 1.0
C1D B:HEM1259 3.0 3.9 0.5
CD2 B:HIS200 3.0 20.6 1.0
C4C B:HEM1259 3.1 4.6 0.5
C1B B:HEM1259 3.1 5.1 0.5
C4A B:HEM1259 3.1 5.2 0.5
C4B B:HEM1259 3.1 3.4 0.5
C4D B:HEM1259 3.1 4.7 0.5
C1A B:HEM1259 3.1 6.3 0.5
C1C B:HEM1259 3.1 3.8 0.5
CHD B:HEM1259 3.4 4.9 0.5
CHB B:HEM1259 3.4 5.8 0.5
CHC B:HEM1259 3.5 4.3 0.5
CHA B:HEM1259 3.5 5.6 0.5
CD2 B:LEU236 4.1 22.5 1.0
ND1 B:HIS200 4.2 20.4 1.0
CG B:HIS200 4.2 19.5 1.0
C2D B:HEM1259 4.3 5.4 0.5
C2B B:HEM1259 4.3 3.9 0.5
C3C B:HEM1259 4.3 3.5 0.5
C3B B:HEM1259 4.3 4.3 0.5
C3A B:HEM1259 4.3 6.4 0.5
C3D B:HEM1259 4.3 4.7 0.5
C2A B:HEM1259 4.3 7.3 0.5
C2C B:HEM1259 4.3 3.9 0.5
CD1 B:ILE238 4.4 22.6 1.0
CE B:MET192 4.9 24.6 1.0

Iron binding site 3 out of 4 in 2vv6

Go back to Iron Binding Sites List in 2vv6
Iron binding site 3 out of 4 in the Bjfixlh in Ferric Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Bjfixlh in Ferric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1259

b:13.4
occ:1.00
FE C:HEM1259 0.0 13.4 1.0
NE2 C:HIS200 2.0 20.9 1.0
NA C:HEM1259 2.1 13.9 1.0
NB C:HEM1259 2.1 12.9 1.0
ND C:HEM1259 2.1 13.4 1.0
NC C:HEM1259 2.1 13.3 1.0
CE1 C:HIS200 3.0 21.8 1.0
CD2 C:HIS200 3.0 21.1 1.0
C4D C:HEM1259 3.1 13.6 1.0
C4A C:HEM1259 3.1 14.7 1.0
C1B C:HEM1259 3.1 12.1 1.0
C1A C:HEM1259 3.1 15.3 1.0
C1D C:HEM1259 3.1 13.1 1.0
C4B C:HEM1259 3.1 12.4 1.0
C1C C:HEM1259 3.1 12.1 1.0
C4C C:HEM1259 3.1 12.6 1.0
CHA C:HEM1259 3.4 14.5 1.0
CHD C:HEM1259 3.4 13.0 1.0
CHB C:HEM1259 3.4 14.1 1.0
CHC C:HEM1259 3.5 13.2 1.0
CD2 C:LEU236 4.1 21.1 1.0
ND1 C:HIS200 4.2 20.3 1.0
CG C:HIS200 4.2 21.9 1.0
C2B C:HEM1259 4.3 12.4 1.0
C3D C:HEM1259 4.3 15.3 1.0
C3A C:HEM1259 4.3 15.7 1.0
C2A C:HEM1259 4.3 17.1 1.0
C2D C:HEM1259 4.3 14.8 1.0
C3B C:HEM1259 4.3 12.8 1.0
C3C C:HEM1259 4.3 11.1 1.0
C2C C:HEM1259 4.3 11.8 1.0
CD1 C:ILE238 4.5 21.9 1.0
CE C:MET192 4.8 22.3 1.0

Iron binding site 4 out of 4 in 2vv6

Go back to Iron Binding Sites List in 2vv6
Iron binding site 4 out of 4 in the Bjfixlh in Ferric Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Bjfixlh in Ferric Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe1259

b:13.2
occ:1.00
FE D:HEM1259 0.0 13.2 1.0
NE2 D:HIS200 2.0 21.4 1.0
NC D:HEM1259 2.1 12.1 1.0
NA D:HEM1259 2.1 12.9 1.0
NB D:HEM1259 2.1 15.0 1.0
ND D:HEM1259 2.1 13.9 1.0
CE1 D:HIS200 3.0 22.5 1.0
CD2 D:HIS200 3.1 21.6 1.0
C4C D:HEM1259 3.1 14.6 1.0
C1B D:HEM1259 3.1 14.8 1.0
C4A D:HEM1259 3.1 15.3 1.0
C1A D:HEM1259 3.1 14.7 1.0
C1C D:HEM1259 3.1 13.6 1.0
C1D D:HEM1259 3.1 13.4 1.0
C4B D:HEM1259 3.1 13.6 1.0
C4D D:HEM1259 3.1 14.0 1.0
CHD D:HEM1259 3.4 13.8 1.0
CHB D:HEM1259 3.4 14.8 1.0
CHA D:HEM1259 3.5 14.9 1.0
CHC D:HEM1259 3.5 13.9 1.0
ND1 D:HIS200 4.1 22.6 1.0
CG D:HIS200 4.2 20.7 1.0
CD2 D:LEU236 4.2 23.0 1.0
C2B D:HEM1259 4.3 15.1 1.0
C3A D:HEM1259 4.3 15.1 1.0
C3C D:HEM1259 4.3 13.2 1.0
C2A D:HEM1259 4.3 15.5 1.0
C2C D:HEM1259 4.3 13.5 1.0
C3B D:HEM1259 4.3 15.2 1.0
C2D D:HEM1259 4.3 14.3 1.0
C3D D:HEM1259 4.3 14.1 1.0
CD1 D:ILE238 4.5 25.2 1.0
CE D:MET192 4.7 25.5 1.0
CD1 D:ILE215 5.0 22.9 1.0

Reference:

R.A.Ayers, K.Moffat. Changes in Quaternary Structure in the Signaling Mechanisms of Pas Domains. Biochemistry V. 47 12078 2008.
ISSN: ISSN 0006-2960
PubMed: 18942854
DOI: 10.1021/BI801254C
Page generated: Sun Dec 13 14:54:29 2020

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