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Iron in PDB 2w6y: Crystal Structure of Sperm Whale Myoglobin Mutant Yqr in Complex with Xenon

Protein crystallography data

The structure of Crystal Structure of Sperm Whale Myoglobin Mutant Yqr in Complex with Xenon, PDB code: 2w6y was solved by A.E.Miele, F.Draghi, F.Renzi, G.Sciara, K.A.Johnson, B.Vallone, M.Brunori, C.Savino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.00 / 1.60
Space group P 6
Cell size a, b, c (Å), α, β, γ (°) 90.626, 90.626, 45.505, 90.00, 90.00, 120.00
R / Rfree (%) 16.5 / 19.6

Other elements in 2w6y:

The structure of Crystal Structure of Sperm Whale Myoglobin Mutant Yqr in Complex with Xenon also contains other interesting chemical elements:

Xenon (Xe) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Sperm Whale Myoglobin Mutant Yqr in Complex with Xenon (pdb code 2w6y). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Sperm Whale Myoglobin Mutant Yqr in Complex with Xenon, PDB code: 2w6y:

Iron binding site 1 out of 1 in 2w6y

Go back to Iron Binding Sites List in 2w6y
Iron binding site 1 out of 1 in the Crystal Structure of Sperm Whale Myoglobin Mutant Yqr in Complex with Xenon


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Sperm Whale Myoglobin Mutant Yqr in Complex with Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1154

b:7.5
occ:1.00
FE A:HEM1154 0.0 7.5 1.0
NB A:HEM1154 2.0 4.5 1.0
ND A:HEM1154 2.0 5.6 1.0
NA A:HEM1154 2.0 5.7 1.0
NC A:HEM1154 2.0 6.4 1.0
NE2 A:HIS93 2.1 5.4 1.0
O A:HOH2058 2.2 11.8 1.0
CE1 A:HIS93 3.0 7.1 1.0
C1D A:HEM1154 3.1 5.5 1.0
C4D A:HEM1154 3.1 5.9 1.0
C1B A:HEM1154 3.1 4.7 1.0
C4B A:HEM1154 3.1 5.4 1.0
C1A A:HEM1154 3.1 6.5 1.0
C1C A:HEM1154 3.1 6.8 1.0
C4C A:HEM1154 3.1 5.0 1.0
C4A A:HEM1154 3.1 5.7 1.0
CD2 A:HIS93 3.1 6.2 1.0
CHA A:HEM1154 3.4 7.3 1.0
CHB A:HEM1154 3.4 6.4 1.0
CHD A:HEM1154 3.4 6.5 1.0
CHC A:HEM1154 3.4 6.3 1.0
ND1 A:HIS93 4.2 6.5 1.0
CG A:HIS93 4.2 6.8 1.0
C3B A:HEM1154 4.3 4.8 1.0
C2B A:HEM1154 4.3 5.6 1.0
C2C A:HEM1154 4.3 5.5 1.0
C3C A:HEM1154 4.3 6.4 1.0
C2D A:HEM1154 4.3 6.2 1.0
C3D A:HEM1154 4.3 6.8 1.0
C2A A:HEM1154 4.3 5.9 1.0
C3A A:HEM1154 4.3 6.5 1.0
CG2 A:VAL68 4.5 7.7 1.0
NE2 A:GLN64 4.7 13.2 1.0
OH A:TYR29 5.0 13.4 1.0
CD2 A:HIS97 5.0 8.8 1.0

Reference:

A.E.Miele, F.Draghi, K.A.Johnson, F.Renzi, G.Sciara, M.Brunori, B.Vallone, C.Savino. When the Same Fold Does Not Mean the Same Function: the Case of Xenon Cavities in Hemoglobin and Myoglobin To Be Published.
Page generated: Sun Dec 13 14:55:06 2020

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