Iron in PDB 2x5u: 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination.
Protein crystallography data
The structure of 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination., PDB code: 2x5u
was solved by
A.B.Wohri,
G.Katona,
L.C.Johansson,
E.Fritz,
E.Malmerberg,
M.Andersson,
J.Vincent,
M.Eklund,
M.Cammarata,
M.Wulff,
J.Davidsson,
G.Groenhof,
R.Neutze,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.78 /
3.00
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
85.693,
143.470,
177.998,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
25 /
28.4
|
Other elements in 2x5u:
The structure of 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination. also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination.
(pdb code 2x5u). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the
80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination., PDB code: 2x5u:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
Iron binding site 1 out
of 5 in 2x5u
Go back to
Iron Binding Sites List in 2x5u
Iron binding site 1 out
of 5 in the 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1333
b:27.9
occ:1.00
|
FE
|
C:HEC1333
|
0.0
|
27.9
|
1.0
|
NE2
|
C:HIS91
|
2.0
|
29.9
|
1.0
|
NA
|
C:HEC1333
|
2.1
|
26.9
|
1.0
|
NB
|
C:HEC1333
|
2.1
|
27.8
|
1.0
|
NC
|
C:HEC1333
|
2.1
|
27.7
|
1.0
|
ND
|
C:HEC1333
|
2.1
|
27.0
|
1.0
|
SD
|
C:MET74
|
2.4
|
27.4
|
1.0
|
CE1
|
C:HIS91
|
2.9
|
30.1
|
1.0
|
CD2
|
C:HIS91
|
3.0
|
30.6
|
1.0
|
C4D
|
C:HEC1333
|
3.1
|
26.1
|
1.0
|
C1A
|
C:HEC1333
|
3.1
|
26.5
|
1.0
|
C1D
|
C:HEC1333
|
3.1
|
26.8
|
1.0
|
C4A
|
C:HEC1333
|
3.1
|
26.9
|
1.0
|
C1B
|
C:HEC1333
|
3.1
|
27.8
|
1.0
|
C4C
|
C:HEC1333
|
3.1
|
27.8
|
1.0
|
C4B
|
C:HEC1333
|
3.1
|
27.9
|
1.0
|
C1C
|
C:HEC1333
|
3.1
|
27.9
|
1.0
|
CHA
|
C:HEC1333
|
3.4
|
26.3
|
1.0
|
CHD
|
C:HEC1333
|
3.4
|
27.2
|
1.0
|
CHB
|
C:HEC1333
|
3.4
|
27.3
|
1.0
|
CE
|
C:MET74
|
3.5
|
27.1
|
1.0
|
CHC
|
C:HEC1333
|
3.5
|
27.8
|
1.0
|
CG
|
C:MET74
|
3.6
|
28.0
|
1.0
|
ND1
|
C:HIS91
|
4.1
|
30.5
|
1.0
|
CG
|
C:HIS91
|
4.1
|
31.1
|
1.0
|
C3D
|
C:HEC1333
|
4.2
|
25.4
|
1.0
|
C2D
|
C:HEC1333
|
4.2
|
26.1
|
1.0
|
C2A
|
C:HEC1333
|
4.3
|
26.2
|
1.0
|
C3A
|
C:HEC1333
|
4.3
|
26.5
|
1.0
|
C2B
|
C:HEC1333
|
4.3
|
28.0
|
1.0
|
C3C
|
C:HEC1333
|
4.3
|
28.0
|
1.0
|
C3B
|
C:HEC1333
|
4.3
|
28.1
|
1.0
|
C2C
|
C:HEC1333
|
4.3
|
28.0
|
1.0
|
CB
|
C:MET74
|
4.3
|
28.4
|
1.0
|
|
Iron binding site 2 out
of 5 in 2x5u
Go back to
Iron Binding Sites List in 2x5u
Iron binding site 2 out
of 5 in the 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1334
b:21.7
occ:1.00
|
FE
|
C:HEC1334
|
0.0
|
21.7
|
1.0
|
NC
|
C:HEC1334
|
2.1
|
21.6
|
1.0
|
ND
|
C:HEC1334
|
2.1
|
22.1
|
1.0
|
NA
|
C:HEC1334
|
2.1
|
22.3
|
1.0
|
NB
|
C:HEC1334
|
2.1
|
21.7
|
1.0
|
NE2
|
C:HIS136
|
2.1
|
19.4
|
1.0
|
SD
|
C:MET110
|
2.3
|
21.0
|
1.0
|
CE1
|
C:HIS136
|
2.9
|
18.6
|
1.0
|
C4D
|
C:HEC1334
|
3.0
|
22.6
|
1.0
|
C1D
|
C:HEC1334
|
3.1
|
22.3
|
1.0
|
C4C
|
C:HEC1334
|
3.1
|
21.5
|
1.0
|
C1A
|
C:HEC1334
|
3.1
|
22.5
|
1.0
|
C1C
|
C:HEC1334
|
3.1
|
21.4
|
1.0
|
C4B
|
C:HEC1334
|
3.1
|
21.4
|
1.0
|
C4A
|
C:HEC1334
|
3.1
|
22.3
|
1.0
|
C1B
|
C:HEC1334
|
3.1
|
21.6
|
1.0
|
CD2
|
C:HIS136
|
3.3
|
19.0
|
1.0
|
CG
|
C:MET110
|
3.3
|
21.1
|
1.0
|
CHA
|
C:HEC1334
|
3.4
|
22.8
|
1.0
|
CHD
|
C:HEC1334
|
3.4
|
22.0
|
1.0
|
CE
|
C:MET110
|
3.4
|
20.4
|
1.0
|
CHC
|
C:HEC1334
|
3.5
|
21.5
|
1.0
|
CHB
|
C:HEC1334
|
3.5
|
21.9
|
1.0
|
ND1
|
C:HIS136
|
4.1
|
18.4
|
1.0
|
CB
|
C:MET110
|
4.1
|
21.0
|
1.0
|
C3D
|
C:HEC1334
|
4.3
|
22.8
|
1.0
|
C2D
|
C:HEC1334
|
4.3
|
22.6
|
1.0
|
C3C
|
C:HEC1334
|
4.3
|
21.1
|
1.0
|
C2C
|
C:HEC1334
|
4.3
|
21.4
|
1.0
|
CG
|
C:HIS136
|
4.3
|
19.2
|
1.0
|
C2A
|
C:HEC1334
|
4.3
|
22.5
|
1.0
|
C3A
|
C:HEC1334
|
4.3
|
22.5
|
1.0
|
C3B
|
C:HEC1334
|
4.3
|
21.1
|
1.0
|
C2B
|
C:HEC1334
|
4.3
|
21.2
|
1.0
|
|
Iron binding site 3 out
of 5 in 2x5u
Go back to
Iron Binding Sites List in 2x5u
Iron binding site 3 out
of 5 in the 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1335
b:14.0
occ:1.00
|
FE
|
C:HEC1335
|
0.0
|
14.0
|
1.0
|
NE2
|
C:HIS248
|
2.0
|
14.1
|
1.0
|
NA
|
C:HEC1335
|
2.0
|
14.1
|
1.0
|
NB
|
C:HEC1335
|
2.0
|
13.9
|
1.0
|
NC
|
C:HEC1335
|
2.1
|
13.9
|
1.0
|
ND
|
C:HEC1335
|
2.1
|
13.7
|
1.0
|
SD
|
C:MET233
|
2.4
|
13.6
|
1.0
|
CE1
|
C:HIS248
|
2.9
|
14.0
|
1.0
|
CD2
|
C:HIS248
|
2.9
|
14.1
|
1.0
|
C4A
|
C:HEC1335
|
3.0
|
14.2
|
1.0
|
C1A
|
C:HEC1335
|
3.1
|
14.5
|
1.0
|
C1B
|
C:HEC1335
|
3.1
|
13.8
|
1.0
|
C4C
|
C:HEC1335
|
3.1
|
14.0
|
1.0
|
C1C
|
C:HEC1335
|
3.1
|
13.7
|
1.0
|
C4B
|
C:HEC1335
|
3.1
|
13.6
|
1.0
|
C1D
|
C:HEC1335
|
3.1
|
13.6
|
1.0
|
C4D
|
C:HEC1335
|
3.1
|
13.9
|
1.0
|
CG
|
C:MET233
|
3.4
|
14.1
|
1.0
|
CHB
|
C:HEC1335
|
3.4
|
14.0
|
1.0
|
CHD
|
C:HEC1335
|
3.4
|
13.7
|
1.0
|
CHA
|
C:HEC1335
|
3.4
|
14.1
|
1.0
|
CHC
|
C:HEC1335
|
3.4
|
13.6
|
1.0
|
CE
|
C:MET233
|
3.5
|
13.2
|
1.0
|
ND1
|
C:HIS248
|
4.0
|
14.1
|
1.0
|
CG
|
C:HIS248
|
4.0
|
14.6
|
1.0
|
C3C
|
C:HEC1335
|
4.3
|
13.8
|
1.0
|
C2C
|
C:HEC1335
|
4.3
|
13.5
|
1.0
|
C3A
|
C:HEC1335
|
4.3
|
14.4
|
1.0
|
C2A
|
C:HEC1335
|
4.3
|
14.8
|
1.0
|
C2B
|
C:HEC1335
|
4.3
|
13.4
|
1.0
|
C3B
|
C:HEC1335
|
4.3
|
13.5
|
1.0
|
CB
|
C:MET233
|
4.3
|
14.3
|
1.0
|
C2D
|
C:HEC1335
|
4.3
|
13.7
|
1.0
|
C3D
|
C:HEC1335
|
4.4
|
14.0
|
1.0
|
|
Iron binding site 4 out
of 5 in 2x5u
Go back to
Iron Binding Sites List in 2x5u
Iron binding site 4 out
of 5 in the 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1336
b:17.8
occ:1.00
|
FE
|
C:HEC1336
|
0.0
|
17.8
|
1.0
|
NE2
|
C:HIS309
|
2.0
|
16.2
|
1.0
|
NE2
|
C:HIS124
|
2.1
|
19.9
|
1.0
|
NB
|
C:HEC1336
|
2.1
|
17.9
|
1.0
|
NC
|
C:HEC1336
|
2.1
|
18.1
|
1.0
|
NA
|
C:HEC1336
|
2.1
|
18.6
|
1.0
|
ND
|
C:HEC1336
|
2.1
|
18.6
|
1.0
|
CE1
|
C:HIS124
|
2.6
|
20.4
|
1.0
|
CE1
|
C:HIS309
|
2.8
|
16.0
|
1.0
|
C4C
|
C:HEC1336
|
3.1
|
18.0
|
1.0
|
C1B
|
C:HEC1336
|
3.1
|
18.0
|
1.0
|
C1C
|
C:HEC1336
|
3.1
|
17.9
|
1.0
|
C1D
|
C:HEC1336
|
3.1
|
18.7
|
1.0
|
C4A
|
C:HEC1336
|
3.1
|
18.5
|
1.0
|
C4B
|
C:HEC1336
|
3.1
|
17.4
|
1.0
|
C4D
|
C:HEC1336
|
3.1
|
18.9
|
1.0
|
C1A
|
C:HEC1336
|
3.1
|
19.0
|
1.0
|
CD2
|
C:HIS309
|
3.2
|
16.2
|
1.0
|
CD2
|
C:HIS124
|
3.3
|
20.4
|
1.0
|
CHD
|
C:HEC1336
|
3.4
|
18.3
|
1.0
|
CHB
|
C:HEC1336
|
3.4
|
18.2
|
1.0
|
CHC
|
C:HEC1336
|
3.5
|
17.8
|
1.0
|
CHA
|
C:HEC1336
|
3.5
|
18.8
|
1.0
|
ND1
|
C:HIS124
|
3.8
|
20.4
|
1.0
|
ND1
|
C:HIS309
|
4.0
|
15.6
|
1.0
|
CG
|
C:HIS124
|
4.2
|
20.8
|
1.0
|
CG
|
C:HIS309
|
4.2
|
16.3
|
1.0
|
C3C
|
C:HEC1336
|
4.3
|
17.9
|
1.0
|
C2C
|
C:HEC1336
|
4.3
|
17.7
|
1.0
|
C2B
|
C:HEC1336
|
4.3
|
17.4
|
1.0
|
C3B
|
C:HEC1336
|
4.3
|
17.4
|
1.0
|
C3A
|
C:HEC1336
|
4.3
|
19.0
|
1.0
|
C2D
|
C:HEC1336
|
4.3
|
19.1
|
1.0
|
C3D
|
C:HEC1336
|
4.3
|
19.4
|
1.0
|
C2A
|
C:HEC1336
|
4.3
|
19.2
|
1.0
|
|
Iron binding site 5 out
of 5 in 2x5u
Go back to
Iron Binding Sites List in 2x5u
Iron binding site 5 out
of 5 in the 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre Without Illumination. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Fe1327
b:15.8
occ:1.00
|
NE2
|
L:HIS190
|
2.0
|
12.6
|
1.0
|
OE2
|
M:GLU232
|
2.1
|
17.0
|
1.0
|
NE2
|
M:HIS264
|
2.1
|
16.1
|
1.0
|
NE2
|
L:HIS230
|
2.2
|
13.3
|
1.0
|
NE2
|
M:HIS217
|
2.2
|
14.5
|
1.0
|
OE1
|
M:GLU232
|
2.3
|
16.6
|
1.0
|
CD
|
M:GLU232
|
2.5
|
17.5
|
1.0
|
CE1
|
M:HIS217
|
2.8
|
14.4
|
1.0
|
CE1
|
L:HIS190
|
2.8
|
11.7
|
1.0
|
CE1
|
M:HIS264
|
2.9
|
16.3
|
1.0
|
CD2
|
L:HIS190
|
3.1
|
11.8
|
1.0
|
CE1
|
L:HIS230
|
3.2
|
12.8
|
1.0
|
CD2
|
L:HIS230
|
3.2
|
12.5
|
1.0
|
CD2
|
M:HIS264
|
3.2
|
16.5
|
1.0
|
CD2
|
M:HIS217
|
3.5
|
13.9
|
1.0
|
ND1
|
L:HIS190
|
4.0
|
11.9
|
1.0
|
CG
|
M:GLU232
|
4.0
|
18.1
|
1.0
|
ND1
|
M:HIS217
|
4.0
|
14.2
|
1.0
|
ND1
|
M:HIS264
|
4.1
|
16.6
|
1.0
|
CG
|
L:HIS190
|
4.2
|
11.7
|
1.0
|
CG
|
M:HIS264
|
4.3
|
16.4
|
1.0
|
ND1
|
L:HIS230
|
4.3
|
12.5
|
1.0
|
CG
|
L:HIS230
|
4.3
|
12.0
|
1.0
|
CG
|
M:HIS217
|
4.4
|
13.9
|
1.0
|
CG1
|
M:ILE221
|
4.4
|
17.7
|
1.0
|
CD1
|
M:ILE221
|
4.6
|
17.7
|
1.0
|
CG1
|
L:ILE194
|
4.7
|
14.8
|
1.0
|
CB
|
M:GLU232
|
4.9
|
18.3
|
1.0
|
|
Reference:
A.B.Wohri,
G.Katona,
L.C.Johansson,
E.Fritz,
E.Malmerberg,
M.Andersson,
J.Vincent,
M.Eklund,
M.Cammarata,
M.Wulff,
J.Davidsson,
G.Groenhof,
R.Neutze.
Light-Induced Structural Changes in A Photosynthetic Reaction Center Caught By Laue Diffraction. Science V. 328 630 2010.
ISSN: ESSN 1095-9203
PubMed: 20431017
DOI: 10.1126/SCIENCE.1186159
Page generated: Sun Aug 4 04:24:02 2024
|