Iron in PDB 2x5v: 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation.

The structure of 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation., PDB code: 2x5v was solved by A.B.Wohri, G.Katona, L.C.Johansson, E.Fritz, E.Malmerberg, M.Andersson, J.Vincent, M.Eklund, M.Cammarata, M.Wulff, J.Davidsson, G.Groenhof, R.Neutze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.18 / 3.00
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	85.693, 143.470, 177.998, 90.00, 90.00, 90.00
R / Rfree (%)	27.7 / 31.9

The structure of 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation. also contains other interesting chemical elements:

Magnesium

(Mg)

4 atoms

The binding sites of Iron atom in the 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation. (pdb code 2x5v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation., PDB code: 2x5v:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in the 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe1333 b:32.5 occ:1.00 FE C:HEC1333 0.0 32.5 1.0 NA C:HEC1333 2.0 31.3 1.0 ND C:HEC1333 2.0 32.2 1.0 NC C:HEC1333 2.1 32.4 1.0 NE2 C:HIS91 2.1 36.1 1.0 NB C:HEC1333 2.1 32.6 1.0 SD C:MET74 2.3 33.4 1.0 CE C:MET74 3.0 33.0 1.0 CE1 C:HIS91 3.0 36.6 1.0 C1A C:HEC1333 3.0 31.6 1.0 C4D C:HEC1333 3.0 31.2 1.0 C1D C:HEC1333 3.0 32.4 1.0 C4A C:HEC1333 3.1 30.7 1.0 C4C C:HEC1333 3.1 32.4 1.0 C1C C:HEC1333 3.1 32.4 1.0 C1B C:HEC1333 3.1 32.1 1.0 C4B C:HEC1333 3.1 32.9 1.0 CD2 C:HIS91 3.2 36.9 1.0 CHA C:HEC1333 3.4 31.3 1.0 CHD C:HEC1333 3.4 32.4 1.0 CHB C:HEC1333 3.5 31.3 1.0 CHC C:HEC1333 3.5 32.9 1.0 CG C:MET74 3.5 34.1 1.0 ND1 C:HIS91 4.1 36.9 1.0 C3D C:HEC1333 4.2 30.1 1.0 C2D C:HEC1333 4.2 31.7 1.0 C2A C:HEC1333 4.2 31.8 1.0 CG C:HIS91 4.3 37.6 1.0 C3A C:HEC1333 4.3 30.8 1.0 C3C C:HEC1333 4.3 32.2 1.0 C2C C:HEC1333 4.3 31.9 1.0 C3B C:HEC1333 4.3 33.2 1.0 C2B C:HEC1333 4.3 32.4 1.0 CB C:MET74 4.3 34.8 1.0

Iron binding site 2 out of 5 in the 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe1334 b:29.1 occ:1.00 FE C:HEC1334 0.0 29.1 1.0 NC C:HEC1334 2.1 29.9 1.0 NB C:HEC1334 2.1 29.4 1.0 NA C:HEC1334 2.1 29.4 1.0 ND C:HEC1334 2.1 30.3 1.0 NE2 C:HIS136 2.2 27.2 1.0 SD C:MET110 2.3 27.5 1.0 CE1 C:HIS136 3.0 26.5 1.0 C1C C:HEC1334 3.1 29.7 1.0 C4B C:HEC1334 3.1 29.3 1.0 C4C C:HEC1334 3.1 30.0 1.0 C4D C:HEC1334 3.1 30.8 1.0 C1A C:HEC1334 3.1 29.5 1.0 C1B C:HEC1334 3.1 28.5 1.0 C1D C:HEC1334 3.1 30.5 1.0 C4A C:HEC1334 3.1 28.6 1.0 CE C:MET110 3.2 26.9 1.0 CG C:MET110 3.3 27.8 1.0 CD2 C:HIS136 3.3 26.9 1.0 CHC C:HEC1334 3.4 29.6 1.0 CHA C:HEC1334 3.4 30.3 1.0 CHD C:HEC1334 3.5 30.7 1.0 CHB C:HEC1334 3.5 27.9 1.0 ND1 C:HIS136 4.2 26.2 1.0 CB C:MET110 4.2 28.1 1.0 C2C C:HEC1334 4.3 29.6 1.0 C3B C:HEC1334 4.3 28.3 1.0 C3C C:HEC1334 4.3 29.6 1.0 C2B C:HEC1334 4.3 28.5 1.0 C3D C:HEC1334 4.3 31.4 1.0 C2D C:HEC1334 4.3 30.5 1.0 C2A C:HEC1334 4.3 29.4 1.0 CG C:HIS136 4.4 26.6 1.0 C3A C:HEC1334 4.4 28.9 1.0

Iron binding site 3 out of 5 in the 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe1335 b:22.2 occ:1.00 FE C:HEC1335 0.0 22.2 1.0 NE2 C:HIS248 2.0 21.8 1.0 NC C:HEC1335 2.0 21.3 1.0 NB C:HEC1335 2.0 21.9 1.0 NA C:HEC1335 2.1 21.6 1.0 ND C:HEC1335 2.1 21.5 1.0 SD C:MET233 2.5 21.7 1.0 CE1 C:HIS248 2.9 21.7 1.0 CD2 C:HIS248 3.0 21.1 1.0 C1C C:HEC1335 3.0 22.3 1.0 C4C C:HEC1335 3.0 21.5 1.0 C4B C:HEC1335 3.0 21.9 1.0 C1B C:HEC1335 3.1 21.9 1.0 C4A C:HEC1335 3.1 21.9 1.0 C1D C:HEC1335 3.1 21.6 1.0 C1A C:HEC1335 3.1 22.0 1.0 C4D C:HEC1335 3.2 21.5 1.0 CHC C:HEC1335 3.4 22.3 1.0 CHD C:HEC1335 3.4 21.6 1.0 CHB C:HEC1335 3.5 21.6 1.0 CG C:MET233 3.5 21.5 1.0 CE C:MET233 3.5 20.8 1.0 CHA C:HEC1335 3.5 22.0 1.0 ND1 C:HIS248 4.0 21.2 1.0 CG C:HIS248 4.1 20.5 1.0 CB C:MET233 4.2 21.7 1.0 C2C C:HEC1335 4.2 22.6 1.0 C3C C:HEC1335 4.2 22.1 1.0 C3B C:HEC1335 4.3 21.5 1.0 C2B C:HEC1335 4.3 21.9 1.0 C3A C:HEC1335 4.3 21.9 1.0 C2A C:HEC1335 4.3 21.9 1.0 C2D C:HEC1335 4.4 21.5 1.0 C3D C:HEC1335 4.4 21.5 1.0

Iron binding site 4 out of 5 in the 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe1336 b:27.3 occ:1.00 FE C:HEC1336 0.0 27.3 1.0 NE2 C:HIS309 2.0 24.7 1.0 NA C:HEC1336 2.1 28.6 1.0 NB C:HEC1336 2.1 27.6 1.0 NC C:HEC1336 2.1 27.5 1.0 ND C:HEC1336 2.1 29.1 1.0 NE2 C:HIS124 2.1 27.3 1.0 CE1 C:HIS124 2.8 27.4 1.0 CE1 C:HIS309 2.8 24.1 1.0 C4A C:HEC1336 3.1 28.7 1.0 C1D C:HEC1336 3.1 29.4 1.0 C1B C:HEC1336 3.1 27.8 1.0 C4C C:HEC1336 3.1 27.8 1.0 C4B C:HEC1336 3.1 27.0 1.0 C1C C:HEC1336 3.1 26.8 1.0 C1A C:HEC1336 3.1 29.6 1.0 C4D C:HEC1336 3.1 29.4 1.0 CD2 C:HIS309 3.2 24.1 1.0 CD2 C:HIS124 3.3 27.3 1.0 CHD C:HEC1336 3.4 28.3 1.0 CHB C:HEC1336 3.4 28.5 1.0 CHC C:HEC1336 3.5 27.2 1.0 CHA C:HEC1336 3.5 29.6 1.0 ND1 C:HIS124 4.0 27.2 1.0 ND1 C:HIS309 4.0 23.8 1.0 CG C:HIS309 4.2 23.6 1.0 CG C:HIS124 4.3 27.1 1.0 C3A C:HEC1336 4.3 29.6 1.0 C2B C:HEC1336 4.3 27.0 1.0 C3B C:HEC1336 4.3 27.0 1.0 C3C C:HEC1336 4.3 27.6 1.0 C2C C:HEC1336 4.3 26.6 1.0 C2D C:HEC1336 4.3 29.9 1.0 C2A C:HEC1336 4.3 29.6 1.0 C3D C:HEC1336 4.4 30.3 1.0

Iron binding site 5 out of 5 in the 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of 80 Microsecond Laue Diffraction Snapshot From Crystals of A Photosynthetic Reaction Centre 3 Millisecond Following Photoactivation. within 5.0Å range: probe atom residue distance (Å) B Occ M:Fe1327 b:24.3 occ:1.00 OE2 M:GLU232 2.0 23.7 1.0 NE2 L:HIS230 2.2 22.2 1.0 NE2 M:HIS264 2.2 22.7 1.0 NE2 L:HIS190 2.3 22.1 1.0 NE2 M:HIS217 2.3 20.1 1.0 OE1 M:GLU232 2.4 23.5 1.0 CD M:GLU232 2.5 23.5 1.0 CE1 M:HIS264 2.9 22.6 1.0 CE1 M:HIS217 3.0 19.0 1.0 CE1 L:HIS230 3.0 21.9 1.0 CE1 L:HIS190 3.2 21.6 1.0 CD2 L:HIS230 3.3 22.4 1.0 CD2 L:HIS190 3.3 21.9 1.0 CD2 M:HIS264 3.4 23.3 1.0 CD2 M:HIS217 3.5 18.7 1.0 CG M:GLU232 4.0 23.5 1.0 ND1 M:HIS264 4.1 23.0 1.0 CG1 M:ILE221 4.1 19.8 1.0 ND1 L:HIS230 4.2 22.1 1.0 ND1 M:HIS217 4.2 18.5 1.0 CG M:HIS264 4.3 23.1 1.0 CG L:HIS230 4.3 22.6 1.0 ND1 L:HIS190 4.4 22.1 1.0 CG L:HIS190 4.5 21.6 1.0 CG M:HIS217 4.5 18.6 1.0 CD1 M:ILE221 4.5 19.7 1.0 CG1 L:ILE194 4.7 21.3 1.0 CB M:GLU232 4.8 23.4 1.0

A.B.Wohri, G.Katona, L.C.Johansson, E.Fritz, E.Malmerberg, M.Andersson, J.Vincent, M.Eklund, M.Cammarata, M.Wulff, J.Davidsson, G.Groenhof, R.Neutze. Light-Induced Structural Changes in A Photosynthetic Reaction Center Caught By Laue Diffraction. Science V. 328 630 2010.
ISSN: ISSN 0036-8075
PubMed: 20431017
DOI: 10.1126/SCIENCE.1186159