Iron in PDB 2xgf: Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip

The structure of Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip, PDB code: 2xgf was solved by S.G.Bartual, J.M.Otero, C.Garcia-Doval, A.L.Llamas-Saiz, R.Kahn, G.C.Fox, M.J.Van Raaij, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.00 / 2.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	157.340, 53.980, 112.750, 90.00, 100.43, 90.00
R / Rfree (%)	17.9 / 23.8

The binding sites of Iron atom in the Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip (pdb code 2xgf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 7 binding sites of Iron where determined in the Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip, PDB code: 2xgf:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7;

Iron binding site 1 out of 7 in the Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe2027 b:16.2 occ:1.00 NE2 C:HIS885 2.3 7.3 1.0 NE2 B:HIS885 2.3 7.3 1.0 NE2 B:HIS883 2.3 12.8 1.0 NE2 C:HIS883 2.3 11.5 1.0 NE2 A:HIS883 2.3 7.7 1.0 NE2 A:HIS885 2.4 11.0 1.0 CE1 C:HIS885 3.2 5.5 1.0 CD2 B:HIS883 3.2 9.6 1.0 CD2 C:HIS883 3.2 8.0 1.0 CE1 B:HIS885 3.2 9.3 1.0 CD2 B:HIS885 3.3 9.6 1.0 CE1 A:HIS885 3.3 8.9 1.0 CE1 A:HIS883 3.3 6.5 1.0 CD2 C:HIS885 3.3 7.5 1.0 CE1 B:HIS883 3.3 9.3 1.0 CD2 A:HIS883 3.3 6.5 1.0 CE1 C:HIS883 3.3 9.6 1.0 CD2 A:HIS885 3.3 8.1 1.0 ND1 C:HIS885 4.3 7.2 1.0 CG B:HIS883 4.4 11.4 1.0 ND1 B:HIS885 4.4 6.8 1.0 ND1 B:HIS883 4.4 10.2 1.0 ND1 A:HIS885 4.4 9.5 1.0 CG C:HIS883 4.4 10.7 1.0 ND1 C:HIS883 4.4 10.5 1.0 ND1 A:HIS883 4.4 12.2 1.0 CG B:HIS885 4.4 9.6 1.0 CG C:HIS885 4.4 10.1 1.0 CG A:HIS885 4.4 11.4 1.0 CG A:HIS883 4.5 10.3 1.0

Iron binding site 2 out of 7 in the Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe2028 b:22.2 occ:1.00 NE2 C:HIS998 2.2 11.9 1.0 NE2 C:HIS1000 2.3 9.1 1.0 NE2 B:HIS1000 2.3 15.6 1.0 NE2 B:HIS998 2.3 9.2 1.0 NE2 A:HIS998 2.3 16.8 1.0 NE2 A:HIS1000 2.4 13.4 1.0 CD2 C:HIS998 3.1 10.8 1.0 CE1 A:HIS998 3.2 15.1 1.0 CD2 B:HIS1000 3.2 13.5 1.0 CD2 C:HIS1000 3.2 8.3 1.0 CE1 C:HIS1000 3.2 11.2 1.0 CD2 B:HIS998 3.3 8.8 1.0 CE1 B:HIS1000 3.3 15.9 1.0 CE1 C:HIS998 3.3 12.5 1.0 CD2 A:HIS1000 3.3 10.8 1.0 CE1 B:HIS998 3.3 7.8 1.0 CE1 A:HIS1000 3.3 11.1 1.0 CD2 A:HIS998 3.4 15.2 1.0 CG C:HIS998 4.3 12.3 1.0 ND1 A:HIS998 4.3 14.6 1.0 ND1 C:HIS998 4.3 11.5 1.0 ND1 C:HIS1000 4.3 11.7 1.0 CG B:HIS1000 4.4 16.7 1.0 ND1 B:HIS1000 4.4 14.1 1.0 CG C:HIS1000 4.4 11.2 1.0 ND1 B:HIS998 4.4 11.2 1.0 CG B:HIS998 4.4 14.8 1.0 ND1 A:HIS1000 4.4 10.2 1.0 CG A:HIS1000 4.5 13.4 1.0 CG A:HIS998 4.5 15.6 1.0

Iron binding site 3 out of 7 in the Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe2029 b:23.5 occ:1.00 NE2 C:HIS991 2.3 17.9 1.0 NE2 A:HIS991 2.3 12.4 1.0 NE2 B:HIS989 2.3 21.9 1.0 NE2 C:HIS989 2.3 17.6 1.0 NE2 A:HIS989 2.3 18.3 1.0 NE2 B:HIS991 2.4 18.2 1.0 CD2 A:HIS991 3.2 13.2 1.0 CD2 B:HIS991 3.2 17.6 1.0 CD2 C:HIS991 3.2 16.6 1.0 CE1 B:HIS989 3.2 20.7 1.0 CE1 C:HIS991 3.2 13.8 1.0 CD2 B:HIS989 3.3 19.7 1.0 CD2 A:HIS989 3.3 16.3 1.0 CE1 C:HIS989 3.3 16.2 1.0 CE1 A:HIS989 3.3 14.8 1.0 CD2 C:HIS989 3.3 18.8 1.0 CE1 A:HIS991 3.3 12.4 1.0 CE1 B:HIS991 3.5 18.4 1.0 ND1 B:HIS989 4.4 21.1 1.0 ND1 C:HIS991 4.4 16.1 1.0 CG A:HIS991 4.4 16.2 1.0 CG C:HIS991 4.4 17.1 1.0 CG B:HIS989 4.4 21.1 1.0 ND1 C:HIS989 4.4 15.3 1.0 ND1 A:HIS989 4.4 13.7 1.0 ND1 A:HIS991 4.4 12.8 1.0 CG A:HIS989 4.4 14.3 1.0 CG B:HIS991 4.4 20.2 1.0 CG C:HIS989 4.4 17.9 1.0 ND1 B:HIS991 4.5 19.6 1.0

Iron binding site 4 out of 7 in the Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe2030 b:24.9 occ:1.00 NE2 B:HIS980 2.2 23.3 1.0 NE2 A:HIS982 2.3 19.8 1.0 NE2 A:HIS980 2.3 20.9 1.0 NE2 B:HIS982 2.3 22.2 1.0 NE2 C:HIS980 2.4 20.0 1.0 NE2 C:HIS982 2.4 15.3 1.0 CE1 B:HIS980 3.1 22.9 1.0 CD2 A:HIS982 3.1 19.1 1.0 CE1 A:HIS980 3.1 20.0 1.0 CD2 B:HIS982 3.2 20.3 1.0 CD2 C:HIS982 3.2 15.8 1.0 CD2 B:HIS980 3.2 23.1 1.0 CE1 C:HIS980 3.3 17.6 1.0 CE1 B:HIS982 3.3 21.7 1.0 CE1 A:HIS982 3.3 15.0 1.0 CD2 A:HIS980 3.3 20.6 1.0 CD2 C:HIS980 3.4 19.9 1.0 CE1 C:HIS982 3.4 13.8 1.0 ND1 B:HIS980 4.2 21.2 1.0 ND1 A:HIS980 4.3 20.1 1.0 CG B:HIS980 4.3 24.7 1.0 CG A:HIS982 4.3 19.8 1.0 CG B:HIS982 4.4 23.2 1.0 ND1 A:HIS982 4.4 17.9 1.0 ND1 C:HIS980 4.4 21.2 1.0 ND1 B:HIS982 4.4 22.6 1.0 CG C:HIS982 4.4 17.1 1.0 CG A:HIS980 4.4 21.8 1.0 ND1 C:HIS982 4.5 12.7 1.0 CG C:HIS980 4.5 20.6 1.0

Iron binding site 5 out of 7 in the Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe2031 b:27.5 occ:1.00 NE2 A:HIS917 2.2 20.1 1.0 NE2 B:HIS915 2.2 18.3 1.0 NE2 C:HIS915 2.3 22.5 1.0 NE2 B:HIS917 2.3 15.5 1.0 NE2 C:HIS917 2.4 15.6 1.0 NE2 A:HIS915 2.4 16.7 1.0 CD2 A:HIS917 3.1 20.8 1.0 CE1 B:HIS915 3.2 15.6 1.0 CE1 C:HIS915 3.2 21.6 1.0 CE1 A:HIS915 3.2 15.8 1.0 CD2 C:HIS917 3.3 17.4 1.0 CD2 B:HIS915 3.3 15.8 1.0 CE1 A:HIS917 3.3 18.3 1.0 CD2 B:HIS917 3.3 14.9 1.0 CD2 C:HIS915 3.3 22.6 1.0 CE1 B:HIS917 3.3 16.7 1.0 CE1 C:HIS917 3.4 17.8 1.0 CD2 A:HIS915 3.4 17.1 1.0 ND1 B:HIS915 4.3 18.1 1.0 CG A:HIS917 4.3 20.8 1.0 ND1 A:HIS917 4.3 17.5 1.0 ND1 C:HIS915 4.4 21.9 1.0 ND1 A:HIS915 4.4 19.2 1.0 CG B:HIS915 4.4 18.4 1.0 ND1 B:HIS917 4.4 16.1 1.0 CG C:HIS915 4.4 23.4 1.0 CG C:HIS917 4.5 18.8 1.0 CG B:HIS917 4.5 17.2 1.0 ND1 C:HIS917 4.5 18.8 1.0 CG A:HIS915 4.5 20.0 1.0

Iron binding site 6 out of 7 in the Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe2032 b:22.3 occ:1.00 NE2 B:HIS968 2.2 17.4 1.0 NE2 A:HIS966 2.3 14.1 1.0 NE2 B:HIS966 2.3 13.3 1.0 NE2 C:HIS966 2.3 21.2 1.0 NE2 C:HIS968 2.4 14.0 1.0 NE2 A:HIS968 2.4 10.7 1.0 CE1 A:HIS966 3.1 12.8 1.0 CE1 B:HIS968 3.1 15.8 1.0 CE1 C:HIS966 3.2 19.0 1.0 CD2 B:HIS968 3.2 15.6 1.0 CE1 B:HIS966 3.2 9.0 1.0 CD2 A:HIS968 3.3 12.7 1.0 CD2 C:HIS968 3.3 14.9 1.0 CE1 C:HIS968 3.3 13.7 1.0 CD2 A:HIS966 3.3 12.4 1.0 CD2 C:HIS966 3.3 17.7 1.0 CD2 B:HIS966 3.4 9.7 1.0 CE1 A:HIS968 3.4 9.8 1.0 ND1 B:HIS968 4.3 17.2 1.0 ND1 A:HIS966 4.3 13.0 1.0 CG B:HIS968 4.3 15.3 1.0 ND1 C:HIS966 4.4 18.1 1.0 ND1 B:HIS966 4.4 10.8 1.0 CG A:HIS966 4.4 14.7 1.0 ND1 C:HIS968 4.4 14.8 1.0 CG A:HIS968 4.4 14.3 1.0 CG C:HIS966 4.5 20.1 1.0 ND1 A:HIS968 4.5 12.4 1.0 CG B:HIS966 4.5 11.2 1.0 CG C:HIS968 4.5 17.5 1.0

Iron binding site 7 out of 7 in the Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of the Bacteriophage T4 Long Tail Fibre Needle-Shaped Receptor-Binding Tip within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe2033 b:19.6 occ:1.00 NE2 B:HIS929 2.2 15.9 1.0 NE2 C:HIS931 2.2 9.1 1.0 NE2 A:HIS929 2.3 11.9 1.0 NE2 B:HIS931 2.3 12.0 1.0 NE2 C:HIS929 2.4 8.9 1.0 NE2 A:HIS931 2.5 6.6 1.0 CE1 B:HIS929 3.1 13.8 1.0 CD2 B:HIS931 3.1 15.4 1.0 CE1 A:HIS929 3.1 9.9 1.0 CD2 C:HIS931 3.2 8.7 1.0 CE1 C:HIS931 3.2 10.2 1.0 CD2 B:HIS929 3.3 13.2 1.0 CE1 C:HIS929 3.3 10.9 1.0 CD2 A:HIS929 3.3 11.8 1.0 CD2 A:HIS931 3.4 8.2 1.0 CE1 B:HIS931 3.4 13.4 1.0 CD2 C:HIS929 3.4 10.8 1.0 CE1 A:HIS931 3.6 10.6 1.0 ND1 B:HIS929 4.2 16.1 1.0 ND1 A:HIS929 4.3 12.4 1.0 CG B:HIS931 4.3 15.0 1.0 CG B:HIS929 4.3 16.3 1.0 ND1 C:HIS931 4.3 9.8 1.0 CG C:HIS931 4.4 11.5 1.0 ND1 B:HIS931 4.4 13.0 1.0 ND1 C:HIS929 4.4 10.7 1.0 CG A:HIS929 4.4 13.5 1.0 CG C:HIS929 4.5 12.1 1.0 CG A:HIS931 4.6 12.3 1.0 ND1 A:HIS931 4.6 12.4 1.0

S.G.Bartual, J.M.Otero, C.Garcia-Doval, A.L.Llamas-Saiz, R.Kahn, G.C.Fox, M.J.Van Raaij. Structure of the Bacteriophage T4 Long Tail Fiber Receptor-Binding Tip. Proc. Natl. Acad. Sci. V. 107 20287 2010U.S.A..
ISSN: ESSN 1091-6490
PubMed: 21041684
DOI: 10.1073/PNAS.1011218107