Iron in PDB 2xq1: Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha
Enzymatic activity of Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha
All present enzymatic activity of Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha:
1.11.1.6;
Protein crystallography data
The structure of Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha, PDB code: 2xq1
was solved by
E.Penya-Soler,
M.C.Vega,
M.Wilmanns,
C.P.Williams,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
20.00 /
2.90
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
132.520,
196.680,
170.850,
90.00,
92.85,
90.00
|
|
R / Rfree (%)
|
19.059 /
22.297
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
15;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha
(pdb code 2xq1). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 15 binding sites of Iron where determined in the
Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha, PDB code: 2xq1:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 15 in 2xq1
Go back to
Iron Binding Sites List in 2xq1
Iron binding site 1 out
of 15 in the Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1503
b:34.2
occ:1.00
|
FE
|
B:HEM1503
|
0.0
|
34.2
|
1.0
|
|
OH
|
B:TYR348
|
1.9
|
20.3
|
1.0
|
|
ND
|
B:HEM1503
|
2.0
|
28.3
|
1.0
|
|
NC
|
B:HEM1503
|
2.1
|
29.7
|
1.0
|
|
NB
|
B:HEM1503
|
2.1
|
31.4
|
1.0
|
|
NA
|
B:HEM1503
|
2.1
|
27.8
|
1.0
|
|
CZ
|
B:TYR348
|
2.9
|
20.7
|
1.0
|
|
C1D
|
B:HEM1503
|
3.0
|
27.9
|
1.0
|
|
C4D
|
B:HEM1503
|
3.0
|
26.2
|
1.0
|
|
C4C
|
B:HEM1503
|
3.0
|
28.9
|
1.0
|
|
C1B
|
B:HEM1503
|
3.1
|
29.9
|
1.0
|
|
C1C
|
B:HEM1503
|
3.1
|
30.4
|
1.0
|
|
C4B
|
B:HEM1503
|
3.1
|
31.8
|
1.0
|
|
C1A
|
B:HEM1503
|
3.1
|
25.3
|
1.0
|
|
C4A
|
B:HEM1503
|
3.1
|
25.7
|
1.0
|
|
CHD
|
B:HEM1503
|
3.4
|
28.2
|
1.0
|
|
CHA
|
B:HEM1503
|
3.4
|
25.2
|
1.0
|
|
CHB
|
B:HEM1503
|
3.4
|
28.3
|
1.0
|
|
CHC
|
B:HEM1503
|
3.5
|
30.7
|
1.0
|
|
CE2
|
B:TYR348
|
3.7
|
20.5
|
1.0
|
|
CE1
|
B:TYR348
|
3.7
|
21.3
|
1.0
|
|
NE
|
B:ARG344
|
4.1
|
24.3
|
1.0
|
|
C3D
|
B:HEM1503
|
4.2
|
26.3
|
1.0
|
|
C2D
|
B:HEM1503
|
4.2
|
27.0
|
1.0
|
|
C3C
|
B:HEM1503
|
4.3
|
28.3
|
1.0
|
|
C2C
|
B:HEM1503
|
4.3
|
30.5
|
1.0
|
|
C3B
|
B:HEM1503
|
4.3
|
31.4
|
1.0
|
|
C2B
|
B:HEM1503
|
4.3
|
30.8
|
1.0
|
|
C3A
|
B:HEM1503
|
4.3
|
21.7
|
1.0
|
|
C2A
|
B:HEM1503
|
4.3
|
22.0
|
1.0
|
|
CG2
|
B:VAL64
|
4.5
|
21.5
|
1.0
|
|
NH2
|
B:ARG344
|
4.6
|
22.9
|
1.0
|
|
NE2
|
B:HIS65
|
4.6
|
24.5
|
1.0
|
|
CZ
|
B:PHE151
|
4.6
|
27.1
|
1.0
|
|
CD2
|
B:HIS65
|
4.7
|
26.5
|
1.0
|
|
CZ
|
B:ARG344
|
4.7
|
23.8
|
1.0
|
|
CD
|
B:ARG344
|
4.9
|
23.3
|
1.0
|
|
CD2
|
B:TYR348
|
4.9
|
21.1
|
1.0
|
|
CD1
|
B:TYR348
|
5.0
|
22.1
|
1.0
|
|
Iron binding site 2 out
of 15 in 2xq1
Go back to
Iron Binding Sites List in 2xq1
Iron binding site 2 out
of 15 in the Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1503
b:34.4
occ:1.00
|
FE
|
C:HEM1503
|
0.0
|
34.4
|
1.0
|
|
ND
|
C:HEM1503
|
2.0
|
26.3
|
1.0
|
|
OH
|
C:TYR348
|
2.0
|
19.7
|
1.0
|
|
NA
|
C:HEM1503
|
2.0
|
27.2
|
1.0
|
|
NC
|
C:HEM1503
|
2.0
|
30.6
|
1.0
|
|
NB
|
C:HEM1503
|
2.1
|
28.3
|
1.0
|
|
C4D
|
C:HEM1503
|
3.0
|
25.1
|
1.0
|
|
C1D
|
C:HEM1503
|
3.0
|
26.4
|
1.0
|
|
C1C
|
C:HEM1503
|
3.0
|
30.6
|
1.0
|
|
C1A
|
C:HEM1503
|
3.0
|
26.0
|
1.0
|
|
CZ
|
C:TYR348
|
3.0
|
19.3
|
1.0
|
|
C4C
|
C:HEM1503
|
3.0
|
30.3
|
1.0
|
|
C4A
|
C:HEM1503
|
3.1
|
24.7
|
1.0
|
|
C4B
|
C:HEM1503
|
3.1
|
27.6
|
1.0
|
|
C1B
|
C:HEM1503
|
3.1
|
26.4
|
1.0
|
|
CHA
|
C:HEM1503
|
3.4
|
24.6
|
1.0
|
|
CHC
|
C:HEM1503
|
3.4
|
28.1
|
1.0
|
|
CHD
|
C:HEM1503
|
3.4
|
28.4
|
1.0
|
|
CHB
|
C:HEM1503
|
3.5
|
25.0
|
1.0
|
|
CE2
|
C:TYR348
|
3.8
|
19.5
|
1.0
|
|
CE1
|
C:TYR348
|
3.9
|
19.8
|
1.0
|
|
NE
|
C:ARG344
|
4.2
|
22.1
|
1.0
|
|
C2C
|
C:HEM1503
|
4.2
|
31.3
|
1.0
|
|
C3C
|
C:HEM1503
|
4.2
|
31.1
|
1.0
|
|
C3D
|
C:HEM1503
|
4.2
|
24.7
|
1.0
|
|
C2D
|
C:HEM1503
|
4.2
|
25.2
|
1.0
|
|
C3A
|
C:HEM1503
|
4.3
|
23.0
|
1.0
|
|
C2A
|
C:HEM1503
|
4.3
|
25.2
|
1.0
|
|
C3B
|
C:HEM1503
|
4.3
|
25.6
|
1.0
|
|
C2B
|
C:HEM1503
|
4.3
|
26.1
|
1.0
|
|
CZ
|
C:PHE151
|
4.4
|
26.9
|
1.0
|
|
NH2
|
C:ARG344
|
4.5
|
25.0
|
1.0
|
|
NE2
|
C:HIS65
|
4.6
|
26.1
|
1.0
|
|
CG2
|
C:VAL64
|
4.6
|
22.2
|
1.0
|
|
CD2
|
C:HIS65
|
4.6
|
25.6
|
1.0
|
|
CZ
|
C:ARG344
|
4.8
|
23.6
|
1.0
|
|
CE2
|
C:PHE151
|
4.9
|
25.8
|
1.0
|
|
Iron binding site 3 out
of 15 in 2xq1
Go back to
Iron Binding Sites List in 2xq1
Iron binding site 3 out
of 15 in the Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe1503
b:41.0
occ:1.00
|
FE
|
D:HEM1503
|
0.0
|
41.0
|
1.0
|
|
OH
|
D:TYR348
|
1.9
|
22.3
|
1.0
|
|
NA
|
D:HEM1503
|
2.0
|
33.6
|
1.0
|
|
ND
|
D:HEM1503
|
2.0
|
34.0
|
1.0
|
|
NC
|
D:HEM1503
|
2.1
|
36.3
|
1.0
|
|
NB
|
D:HEM1503
|
2.1
|
35.1
|
1.0
|
|
CZ
|
D:TYR348
|
2.9
|
20.7
|
1.0
|
|
C1A
|
D:HEM1503
|
3.0
|
32.4
|
1.0
|
|
C4D
|
D:HEM1503
|
3.0
|
32.6
|
1.0
|
|
C1D
|
D:HEM1503
|
3.0
|
34.5
|
1.0
|
|
C4A
|
D:HEM1503
|
3.1
|
31.9
|
1.0
|
|
C4B
|
D:HEM1503
|
3.1
|
34.0
|
1.0
|
|
C1C
|
D:HEM1503
|
3.1
|
36.4
|
1.0
|
|
C4C
|
D:HEM1503
|
3.1
|
35.8
|
1.0
|
|
C1B
|
D:HEM1503
|
3.2
|
33.1
|
1.0
|
|
CHA
|
D:HEM1503
|
3.3
|
32.1
|
1.0
|
|
CHD
|
D:HEM1503
|
3.4
|
36.1
|
1.0
|
|
CHB
|
D:HEM1503
|
3.5
|
32.8
|
1.0
|
|
CHC
|
D:HEM1503
|
3.5
|
35.4
|
1.0
|
|
CE2
|
D:TYR348
|
3.6
|
21.0
|
1.0
|
|
CE1
|
D:TYR348
|
3.7
|
20.8
|
1.0
|
|
NE
|
D:ARG344
|
4.0
|
23.8
|
1.0
|
|
C3D
|
D:HEM1503
|
4.2
|
30.4
|
1.0
|
|
C2A
|
D:HEM1503
|
4.2
|
30.4
|
1.0
|
|
C3A
|
D:HEM1503
|
4.2
|
31.1
|
1.0
|
|
C2D
|
D:HEM1503
|
4.3
|
33.0
|
1.0
|
|
C3B
|
D:HEM1503
|
4.3
|
32.1
|
1.0
|
|
C2C
|
D:HEM1503
|
4.3
|
36.0
|
1.0
|
|
C3C
|
D:HEM1503
|
4.3
|
35.1
|
1.0
|
|
C2B
|
D:HEM1503
|
4.4
|
30.6
|
1.0
|
|
NH2
|
D:ARG344
|
4.4
|
22.0
|
1.0
|
|
NE2
|
D:HIS65
|
4.5
|
25.4
|
1.0
|
|
CG2
|
D:VAL64
|
4.5
|
22.5
|
1.0
|
|
CD2
|
D:HIS65
|
4.6
|
26.4
|
1.0
|
|
CZ
|
D:ARG344
|
4.6
|
24.0
|
1.0
|
|
CZ
|
D:PHE151
|
4.6
|
27.0
|
1.0
|
|
CD2
|
D:TYR348
|
4.8
|
22.9
|
1.0
|
|
CD
|
D:ARG344
|
4.9
|
24.1
|
1.0
|
|
CD1
|
D:TYR348
|
4.9
|
21.7
|
1.0
|
|
Iron binding site 4 out
of 15 in 2xq1
Go back to
Iron Binding Sites List in 2xq1
Iron binding site 4 out
of 15 in the Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe1503
b:38.0
occ:1.00
|
FE
|
E:HEM1503
|
0.0
|
38.0
|
1.0
|
|
ND
|
E:HEM1503
|
2.0
|
31.2
|
1.0
|
|
OH
|
E:TYR348
|
2.0
|
21.2
|
1.0
|
|
NA
|
E:HEM1503
|
2.0
|
29.4
|
1.0
|
|
NB
|
E:HEM1503
|
2.1
|
30.3
|
1.0
|
|
NC
|
E:HEM1503
|
2.1
|
34.6
|
1.0
|
|
C4D
|
E:HEM1503
|
2.9
|
30.3
|
1.0
|
|
C1A
|
E:HEM1503
|
3.0
|
27.1
|
1.0
|
|
CZ
|
E:TYR348
|
3.0
|
21.7
|
1.0
|
|
C4B
|
E:HEM1503
|
3.1
|
30.1
|
1.0
|
|
C1C
|
E:HEM1503
|
3.1
|
33.4
|
1.0
|
|
C1D
|
E:HEM1503
|
3.1
|
31.8
|
1.0
|
|
C4A
|
E:HEM1503
|
3.1
|
26.9
|
1.0
|
|
C1B
|
E:HEM1503
|
3.2
|
28.3
|
1.0
|
|
C4C
|
E:HEM1503
|
3.2
|
34.3
|
1.0
|
|
CHA
|
E:HEM1503
|
3.3
|
27.5
|
1.0
|
|
CHC
|
E:HEM1503
|
3.4
|
30.6
|
1.0
|
|
CHB
|
E:HEM1503
|
3.5
|
28.0
|
1.0
|
|
CHD
|
E:HEM1503
|
3.5
|
32.5
|
1.0
|
|
CE2
|
E:TYR348
|
3.7
|
20.6
|
1.0
|
|
CE1
|
E:TYR348
|
3.9
|
21.4
|
1.0
|
|
NE
|
E:ARG344
|
4.0
|
20.8
|
1.0
|
|
C3D
|
E:HEM1503
|
4.2
|
30.5
|
1.0
|
|
C2A
|
E:HEM1503
|
4.2
|
24.7
|
1.0
|
|
C3A
|
E:HEM1503
|
4.2
|
23.8
|
1.0
|
|
C2D
|
E:HEM1503
|
4.2
|
30.4
|
1.0
|
|
NH2
|
E:ARG344
|
4.3
|
22.0
|
1.0
|
|
C3B
|
E:HEM1503
|
4.3
|
29.1
|
1.0
|
|
C2C
|
E:HEM1503
|
4.3
|
34.2
|
1.0
|
|
C2B
|
E:HEM1503
|
4.4
|
27.4
|
1.0
|
|
C3C
|
E:HEM1503
|
4.4
|
34.2
|
1.0
|
|
CD2
|
E:HIS65
|
4.5
|
27.8
|
1.0
|
|
CG2
|
E:VAL64
|
4.5
|
23.1
|
1.0
|
|
NE2
|
E:HIS65
|
4.5
|
26.3
|
1.0
|
|
CZ
|
E:PHE151
|
4.6
|
27.1
|
1.0
|
|
CZ
|
E:ARG344
|
4.6
|
21.9
|
1.0
|
|
CD2
|
E:TYR348
|
4.9
|
20.6
|
1.0
|
|
CD
|
E:ARG344
|
5.0
|
21.5
|
1.0
|
|
Iron binding site 5 out
of 15 in 2xq1
Go back to
Iron Binding Sites List in 2xq1
Iron binding site 5 out
of 15 in the Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe1503
b:34.4
occ:1.00
|
FE
|
F:HEM1503
|
0.0
|
34.4
|
1.0
|
|
OH
|
F:TYR348
|
1.9
|
20.4
|
1.0
|
|
NC
|
F:HEM1503
|
2.0
|
29.6
|
1.0
|
|
NA
|
F:HEM1503
|
2.1
|
26.7
|
1.0
|
|
ND
|
F:HEM1503
|
2.1
|
26.3
|
1.0
|
|
NB
|
F:HEM1503
|
2.1
|
28.2
|
1.0
|
|
CZ
|
F:TYR348
|
2.9
|
20.9
|
1.0
|
|
C1C
|
F:HEM1503
|
3.0
|
29.8
|
1.0
|
|
C4D
|
F:HEM1503
|
3.0
|
24.8
|
1.0
|
|
C1A
|
F:HEM1503
|
3.0
|
25.0
|
1.0
|
|
C4A
|
F:HEM1503
|
3.1
|
24.2
|
1.0
|
|
C4C
|
F:HEM1503
|
3.1
|
28.5
|
1.0
|
|
C1D
|
F:HEM1503
|
3.1
|
25.1
|
1.0
|
|
C1B
|
F:HEM1503
|
3.1
|
27.1
|
1.0
|
|
C4B
|
F:HEM1503
|
3.1
|
27.8
|
1.0
|
|
CHA
|
F:HEM1503
|
3.4
|
23.7
|
1.0
|
|
CHB
|
F:HEM1503
|
3.4
|
25.6
|
1.0
|
|
CHC
|
F:HEM1503
|
3.4
|
28.6
|
1.0
|
|
CHD
|
F:HEM1503
|
3.4
|
25.6
|
1.0
|
|
CE2
|
F:TYR348
|
3.7
|
21.1
|
1.0
|
|
CE1
|
F:TYR348
|
3.7
|
21.4
|
1.0
|
|
NE
|
F:ARG344
|
4.1
|
21.5
|
1.0
|
|
C2C
|
F:HEM1503
|
4.2
|
29.5
|
1.0
|
|
C3C
|
F:HEM1503
|
4.2
|
28.4
|
1.0
|
|
C3A
|
F:HEM1503
|
4.3
|
22.8
|
1.0
|
|
C2A
|
F:HEM1503
|
4.3
|
24.3
|
1.0
|
|
C3D
|
F:HEM1503
|
4.3
|
23.3
|
1.0
|
|
C2D
|
F:HEM1503
|
4.3
|
23.6
|
1.0
|
|
NH2
|
F:ARG344
|
4.3
|
21.1
|
1.0
|
|
C2B
|
F:HEM1503
|
4.3
|
27.3
|
1.0
|
|
C3B
|
F:HEM1503
|
4.3
|
27.2
|
1.0
|
|
NE2
|
F:HIS65
|
4.5
|
24.8
|
1.0
|
|
CZ
|
F:ARG344
|
4.6
|
21.3
|
1.0
|
|
CD2
|
F:HIS65
|
4.6
|
25.1
|
1.0
|
|
CG2
|
F:VAL64
|
4.7
|
22.4
|
1.0
|
|
CZ
|
F:PHE151
|
4.8
|
27.5
|
1.0
|
|
CD2
|
F:TYR348
|
5.0
|
21.1
|
1.0
|
|
CD1
|
F:TYR348
|
5.0
|
21.4
|
1.0
|
|
CD
|
F:ARG344
|
5.0
|
22.0
|
1.0
|
|
Iron binding site 6 out
of 15 in 2xq1
Go back to
Iron Binding Sites List in 2xq1
Iron binding site 6 out
of 15 in the Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe1503
b:32.1
occ:1.00
|
FE
|
G:HEM1503
|
0.0
|
32.1
|
1.0
|
|
OH
|
G:TYR348
|
1.9
|
20.6
|
1.0
|
|
ND
|
G:HEM1503
|
2.0
|
24.9
|
1.0
|
|
NC
|
G:HEM1503
|
2.1
|
28.5
|
1.0
|
|
NA
|
G:HEM1503
|
2.1
|
23.5
|
1.0
|
|
NB
|
G:HEM1503
|
2.1
|
26.8
|
1.0
|
|
CZ
|
G:TYR348
|
2.9
|
20.2
|
1.0
|
|
C4D
|
G:HEM1503
|
3.0
|
23.8
|
1.0
|
|
C1C
|
G:HEM1503
|
3.0
|
28.6
|
1.0
|
|
C1D
|
G:HEM1503
|
3.0
|
25.1
|
1.0
|
|
C1A
|
G:HEM1503
|
3.1
|
22.9
|
1.0
|
|
C4C
|
G:HEM1503
|
3.1
|
28.4
|
1.0
|
|
C4B
|
G:HEM1503
|
3.1
|
26.2
|
1.0
|
|
C4A
|
G:HEM1503
|
3.1
|
22.0
|
1.0
|
|
C1B
|
G:HEM1503
|
3.2
|
26.7
|
1.0
|
|
CHA
|
G:HEM1503
|
3.4
|
23.7
|
1.0
|
|
CHC
|
G:HEM1503
|
3.4
|
27.4
|
1.0
|
|
CHD
|
G:HEM1503
|
3.4
|
26.8
|
1.0
|
|
CHB
|
G:HEM1503
|
3.5
|
24.2
|
1.0
|
|
CE2
|
G:TYR348
|
3.7
|
20.1
|
1.0
|
|
O
|
G:HOH2002
|
3.8
|
26.6
|
1.0
|
|
CE1
|
G:TYR348
|
3.8
|
20.2
|
1.0
|
|
NE
|
G:ARG344
|
4.1
|
23.7
|
1.0
|
|
C3D
|
G:HEM1503
|
4.2
|
23.2
|
1.0
|
|
C2D
|
G:HEM1503
|
4.2
|
24.0
|
1.0
|
|
C2C
|
G:HEM1503
|
4.2
|
29.2
|
1.0
|
|
NH2
|
G:ARG344
|
4.3
|
21.3
|
1.0
|
|
C3C
|
G:HEM1503
|
4.3
|
29.2
|
1.0
|
|
C2A
|
G:HEM1503
|
4.3
|
21.7
|
1.0
|
|
C3A
|
G:HEM1503
|
4.3
|
21.1
|
1.0
|
|
C3B
|
G:HEM1503
|
4.3
|
26.2
|
1.0
|
|
C2B
|
G:HEM1503
|
4.4
|
26.2
|
1.0
|
|
NE2
|
G:HIS65
|
4.4
|
25.4
|
1.0
|
|
CD2
|
G:HIS65
|
4.5
|
26.1
|
1.0
|
|
CZ
|
G:ARG344
|
4.6
|
22.6
|
1.0
|
|
CZ
|
G:PHE151
|
4.6
|
27.4
|
1.0
|
|
CG2
|
G:VAL64
|
4.7
|
22.3
|
1.0
|
|
CD2
|
G:TYR348
|
5.0
|
19.8
|
1.0
|
|
CD1
|
G:TYR348
|
5.0
|
20.4
|
1.0
|
|
Iron binding site 7 out
of 15 in 2xq1
Go back to
Iron Binding Sites List in 2xq1
Iron binding site 7 out
of 15 in the Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe1503
b:46.2
occ:1.00
|
FE
|
H:HEM1503
|
0.0
|
46.2
|
1.0
|
|
ND
|
H:HEM1503
|
2.1
|
41.9
|
1.0
|
|
NB
|
H:HEM1503
|
2.1
|
43.4
|
1.0
|
|
NC
|
H:HEM1503
|
2.1
|
44.8
|
1.0
|
|
NA
|
H:HEM1503
|
2.1
|
40.9
|
1.0
|
|
OH
|
H:TYR348
|
2.1
|
20.4
|
1.0
|
|
C1D
|
H:HEM1503
|
3.1
|
42.6
|
1.0
|
|
C1C
|
H:HEM1503
|
3.1
|
44.4
|
1.0
|
|
C4C
|
H:HEM1503
|
3.1
|
45.0
|
1.0
|
|
C4B
|
H:HEM1503
|
3.1
|
43.1
|
1.0
|
|
C4D
|
H:HEM1503
|
3.1
|
40.9
|
1.0
|
|
CZ
|
H:TYR348
|
3.1
|
20.6
|
1.0
|
|
C1A
|
H:HEM1503
|
3.1
|
39.1
|
1.0
|
|
C1B
|
H:HEM1503
|
3.1
|
42.5
|
1.0
|
|
C4A
|
H:HEM1503
|
3.1
|
38.8
|
1.0
|
|
CHC
|
H:HEM1503
|
3.4
|
44.5
|
1.0
|
|
CHD
|
H:HEM1503
|
3.4
|
44.5
|
1.0
|
|
CHA
|
H:HEM1503
|
3.4
|
40.1
|
1.0
|
|
CHB
|
H:HEM1503
|
3.5
|
40.9
|
1.0
|
|
CE2
|
H:TYR348
|
3.8
|
21.1
|
1.0
|
|
CE1
|
H:TYR348
|
3.9
|
22.0
|
1.0
|
|
NE
|
H:ARG344
|
4.0
|
23.0
|
1.0
|
|
C2C
|
H:HEM1503
|
4.2
|
44.7
|
1.0
|
|
C3C
|
H:HEM1503
|
4.2
|
45.4
|
1.0
|
|
C3B
|
H:HEM1503
|
4.3
|
42.6
|
1.0
|
|
C2D
|
H:HEM1503
|
4.3
|
41.4
|
1.0
|
|
C3D
|
H:HEM1503
|
4.3
|
39.6
|
1.0
|
|
C2A
|
H:HEM1503
|
4.3
|
35.5
|
1.0
|
|
C2B
|
H:HEM1503
|
4.3
|
42.3
|
1.0
|
|
C3A
|
H:HEM1503
|
4.3
|
37.0
|
1.0
|
|
CG2
|
H:VAL64
|
4.5
|
22.4
|
1.0
|
|
NE2
|
H:HIS65
|
4.5
|
27.7
|
1.0
|
|
CZ
|
H:PHE151
|
4.5
|
27.9
|
1.0
|
|
NH2
|
H:ARG344
|
4.6
|
23.3
|
1.0
|
|
CD2
|
H:HIS65
|
4.6
|
27.1
|
1.0
|
|
CZ
|
H:ARG344
|
4.7
|
24.5
|
1.0
|
|
CD
|
H:ARG344
|
4.8
|
22.0
|
1.0
|
|
Iron binding site 8 out
of 15 in 2xq1
Go back to
Iron Binding Sites List in 2xq1
Iron binding site 8 out
of 15 in the Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe1503
b:40.0
occ:1.00
|
FE
|
I:HEM1503
|
0.0
|
40.0
|
1.0
|
|
NC
|
I:HEM1503
|
2.0
|
38.6
|
1.0
|
|
ND
|
I:HEM1503
|
2.0
|
35.6
|
1.0
|
|
OH
|
I:TYR348
|
2.1
|
19.4
|
1.0
|
|
NB
|
I:HEM1503
|
2.1
|
36.3
|
1.0
|
|
NA
|
I:HEM1503
|
2.1
|
34.6
|
1.0
|
|
C4C
|
I:HEM1503
|
3.0
|
39.3
|
1.0
|
|
C1C
|
I:HEM1503
|
3.0
|
38.2
|
1.0
|
|
C1D
|
I:HEM1503
|
3.0
|
36.6
|
1.0
|
|
C4D
|
I:HEM1503
|
3.0
|
33.4
|
1.0
|
|
CZ
|
I:TYR348
|
3.0
|
21.7
|
1.0
|
|
C1B
|
I:HEM1503
|
3.1
|
35.5
|
1.0
|
|
C4A
|
I:HEM1503
|
3.1
|
33.1
|
1.0
|
|
C4B
|
I:HEM1503
|
3.1
|
37.0
|
1.0
|
|
C1A
|
I:HEM1503
|
3.2
|
31.6
|
1.0
|
|
CHD
|
I:HEM1503
|
3.4
|
38.2
|
1.0
|
|
CHC
|
I:HEM1503
|
3.4
|
37.2
|
1.0
|
|
CHA
|
I:HEM1503
|
3.4
|
31.2
|
1.0
|
|
CHB
|
I:HEM1503
|
3.5
|
34.5
|
1.0
|
|
CE1
|
I:TYR348
|
3.8
|
21.8
|
1.0
|
|
CE2
|
I:TYR348
|
3.9
|
21.5
|
1.0
|
|
NE
|
I:ARG344
|
4.1
|
22.9
|
1.0
|
|
C3C
|
I:HEM1503
|
4.2
|
38.4
|
1.0
|
|
C2C
|
I:HEM1503
|
4.2
|
38.1
|
1.0
|
|
C2D
|
I:HEM1503
|
4.2
|
34.6
|
1.0
|
|
C3D
|
I:HEM1503
|
4.2
|
33.4
|
1.0
|
|
C2B
|
I:HEM1503
|
4.3
|
35.9
|
1.0
|
|
C3A
|
I:HEM1503
|
4.4
|
30.9
|
1.0
|
|
C3B
|
I:HEM1503
|
4.4
|
36.5
|
1.0
|
|
C2A
|
I:HEM1503
|
4.4
|
31.1
|
1.0
|
|
NE2
|
I:HIS65
|
4.4
|
26.1
|
1.0
|
|
CD2
|
I:HIS65
|
4.5
|
26.4
|
1.0
|
|
NH2
|
I:ARG344
|
4.5
|
23.2
|
1.0
|
|
CG2
|
I:VAL64
|
4.5
|
22.5
|
1.0
|
|
CZ
|
I:PHE151
|
4.6
|
27.8
|
1.0
|
|
CZ
|
I:ARG344
|
4.7
|
23.4
|
1.0
|
|
CD
|
I:ARG344
|
5.0
|
23.3
|
1.0
|
|
Iron binding site 9 out
of 15 in 2xq1
Go back to
Iron Binding Sites List in 2xq1
Iron binding site 9 out
of 15 in the Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe1503
b:41.0
occ:1.00
|
FE
|
J:HEM1503
|
0.0
|
41.0
|
1.0
|
|
OH
|
J:TYR348
|
1.9
|
21.8
|
1.0
|
|
ND
|
J:HEM1503
|
2.0
|
35.1
|
1.0
|
|
NA
|
J:HEM1503
|
2.1
|
35.5
|
1.0
|
|
NC
|
J:HEM1503
|
2.1
|
38.3
|
1.0
|
|
NB
|
J:HEM1503
|
2.1
|
36.4
|
1.0
|
|
C4D
|
J:HEM1503
|
2.9
|
33.5
|
1.0
|
|
CZ
|
J:TYR348
|
3.0
|
21.0
|
1.0
|
|
C1A
|
J:HEM1503
|
3.0
|
33.8
|
1.0
|
|
C1C
|
J:HEM1503
|
3.0
|
38.5
|
1.0
|
|
C1D
|
J:HEM1503
|
3.0
|
35.0
|
1.0
|
|
C4B
|
J:HEM1503
|
3.1
|
35.6
|
1.0
|
|
C4C
|
J:HEM1503
|
3.1
|
37.7
|
1.0
|
|
C4A
|
J:HEM1503
|
3.1
|
33.8
|
1.0
|
|
C1B
|
J:HEM1503
|
3.2
|
35.5
|
1.0
|
|
CHA
|
J:HEM1503
|
3.3
|
33.5
|
1.0
|
|
CHC
|
J:HEM1503
|
3.4
|
36.5
|
1.0
|
|
CHD
|
J:HEM1503
|
3.5
|
36.5
|
1.0
|
|
CHB
|
J:HEM1503
|
3.5
|
35.3
|
1.0
|
|
CE2
|
J:TYR348
|
3.7
|
21.2
|
1.0
|
|
CE1
|
J:TYR348
|
3.8
|
20.5
|
1.0
|
|
NE
|
J:ARG344
|
4.0
|
21.1
|
1.0
|
|
C3D
|
J:HEM1503
|
4.2
|
32.0
|
1.0
|
|
C2C
|
J:HEM1503
|
4.2
|
39.0
|
1.0
|
|
C2A
|
J:HEM1503
|
4.2
|
32.0
|
1.0
|
|
C2D
|
J:HEM1503
|
4.3
|
33.4
|
1.0
|
|
C3C
|
J:HEM1503
|
4.3
|
39.3
|
1.0
|
|
C3A
|
J:HEM1503
|
4.3
|
31.4
|
1.0
|
|
C3B
|
J:HEM1503
|
4.3
|
35.1
|
1.0
|
|
C2B
|
J:HEM1503
|
4.4
|
34.8
|
1.0
|
|
NE2
|
J:HIS65
|
4.4
|
25.9
|
1.0
|
|
NH2
|
J:ARG344
|
4.5
|
24.1
|
1.0
|
|
CZ
|
J:PHE151
|
4.5
|
25.9
|
1.0
|
|
CD2
|
J:HIS65
|
4.5
|
26.7
|
1.0
|
|
CZ
|
J:ARG344
|
4.7
|
23.7
|
1.0
|
|
CG2
|
J:VAL64
|
4.7
|
22.7
|
1.0
|
|
CD
|
J:ARG344
|
4.9
|
20.7
|
1.0
|
|
Iron binding site 10 out
of 15 in 2xq1
Go back to
Iron Binding Sites List in 2xq1
Iron binding site 10 out
of 15 in the Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of Peroxisomal Catalase From the Yeast Hansenula Polymorpha within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Fe1503
b:37.1
occ:1.00
|
FE
|
K:HEM1503
|
0.0
|
37.1
|
1.0
|
|
OH
|
K:TYR348
|
2.0
|
21.6
|
1.0
|
|
ND
|
K:HEM1503
|
2.0
|
32.1
|
1.0
|
|
NB
|
K:HEM1503
|
2.1
|
32.3
|
1.0
|
|
NA
|
K:HEM1503
|
2.1
|
31.0
|
1.0
|
|
NC
|
K:HEM1503
|
2.1
|
35.2
|
1.0
|
|
CZ
|
K:TYR348
|
3.0
|
22.2
|
1.0
|
|
C4D
|
K:HEM1503
|
3.0
|
31.0
|
1.0
|
|
C1A
|
K:HEM1503
|
3.0
|
29.2
|
1.0
|
|
C4B
|
K:HEM1503
|
3.0
|
32.6
|
1.0
|
|
C1C
|
K:HEM1503
|
3.1
|
35.1
|
1.0
|
|
C1B
|
K:HEM1503
|
3.1
|
30.9
|
1.0
|
|
C1D
|
K:HEM1503
|
3.1
|
32.4
|
1.0
|
|
C4C
|
K:HEM1503
|
3.1
|
35.1
|
1.0
|
|
C4A
|
K:HEM1503
|
3.1
|
29.5
|
1.0
|
|
CHA
|
K:HEM1503
|
3.3
|
29.7
|
1.0
|
|
CHC
|
K:HEM1503
|
3.4
|
34.1
|
1.0
|
|
CHB
|
K:HEM1503
|
3.5
|
30.8
|
1.0
|
|
CHD
|
K:HEM1503
|
3.5
|
33.9
|
1.0
|
|
CE2
|
K:TYR348
|
3.7
|
21.9
|
1.0
|
|
CE1
|
K:TYR348
|
3.7
|
22.2
|
1.0
|
|
NE
|
K:ARG344
|
4.2
|
23.2
|
1.0
|
|
C3D
|
K:HEM1503
|
4.2
|
29.7
|
1.0
|
|
C3B
|
K:HEM1503
|
4.3
|
31.1
|
1.0
|
|
C3C
|
K:HEM1503
|
4.3
|
35.8
|
1.0
|
|
C2C
|
K:HEM1503
|
4.3
|
35.2
|
1.0
|
|
C2A
|
K:HEM1503
|
4.3
|
28.0
|
1.0
|
|
C2B
|
K:HEM1503
|
4.3
|
29.3
|
1.0
|
|
C2D
|
K:HEM1503
|
4.3
|
31.7
|
1.0
|
|
C3A
|
K:HEM1503
|
4.3
|
27.0
|
1.0
|
|
NE2
|
K:HIS65
|
4.4
|
27.6
|
1.0
|
|
NH2
|
K:ARG344
|
4.4
|
23.4
|
1.0
|
|
CD2
|
K:HIS65
|
4.5
|
27.2
|
1.0
|
|
CZ
|
K:PHE151
|
4.6
|
28.3
|
1.0
|
|
CG2
|
K:VAL64
|
4.6
|
23.2
|
1.0
|
|
CZ
|
K:ARG344
|
4.7
|
23.4
|
1.0
|
|
CD2
|
K:TYR348
|
5.0
|
21.5
|
1.0
|
|
CD1
|
K:TYR348
|
5.0
|
23.0
|
1.0
|
|
Reference:
E.Penya-Soler,
M.C.Vega,
M.Wilmanns,
C.P.Williams.
Structural Features of Peroxisomal Catalase From the Yeast Hansenula Polymorpha Acta Crystallogr.,Sect.D V. 67 690 2011.
ISSN: ISSN 0907-4449
PubMed: 21795810
DOI: 10.1107/S0907444911022463
Page generated: Sun Aug 4 04:40:21 2024
|
