Iron in PDB 2xsj: Structure of Desulforubidin From Desulfomicrobium Norvegicum

All present enzymatic activity of Structure of Desulforubidin From Desulfomicrobium Norvegicum:
1.8.99.3;

The structure of Structure of Desulforubidin From Desulfomicrobium Norvegicum, PDB code: 2xsj was solved by T.F.Oliveira, A.R.Khan, I.A.C.Pereira, M.Archer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.51 / 2.53
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	99.340, 135.090, 178.030, 90.00, 90.00, 90.00
R / Rfree (%)	15.622 / 20.848

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Iron atom in the Structure of Desulforubidin From Desulfomicrobium Norvegicum (pdb code 2xsj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 36 binding sites of Iron where determined in the Structure of Desulforubidin From Desulfomicrobium Norvegicum, PDB code: 2xsj:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 36 in the Structure of Desulforubidin From Desulfomicrobium Norvegicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Desulforubidin From Desulfomicrobium Norvegicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:9.9 occ:1.00 FE1 A:SF4501 0.0 9.9 1.0 S2 A:SF4501 2.3 12.1 1.0 S4 A:SF4501 2.3 11.4 1.0 SG A:CYS303 2.3 12.2 1.0 S3 A:SF4501 2.3 11.6 1.0 FE3 A:SF4501 2.6 14.2 1.0 FE2 A:SF4501 2.6 12.5 1.0 FE4 A:SF4501 2.7 10.0 1.0 CB A:CYS303 3.4 11.7 1.0 S1 A:SF4501 3.8 12.9 1.0 CA A:CYS303 3.9 11.6 1.0 N A:ARG305 4.0 11.9 1.0 N A:THR304 4.2 11.9 1.0 CD1 A:ILE244 4.2 8.9 1.0 C A:CYS303 4.4 11.7 1.0 CA A:ARG305 4.4 11.7 1.0 N A:CYS306 4.5 11.4 1.0 SG A:CYS288 4.5 17.4 1.0 SG A:CYS309 4.7 13.0 1.0 SG A:CYS284 4.7 14.5 1.0 SG A:CYS306 4.9 10.2 1.0 C A:ARG305 5.0 11.3 1.0

Iron binding site 2 out of 36 in the Structure of Desulforubidin From Desulfomicrobium Norvegicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Desulforubidin From Desulfomicrobium Norvegicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:10.0 occ:1.00 FE4 A:SF4501 0.0 10.0 1.0 SG A:CYS306 2.3 10.2 1.0 S1 A:SF4501 2.3 12.9 1.0 S2 A:SF4501 2.3 12.1 1.0 S3 A:SF4501 2.3 11.6 1.0 FE3 A:SF4501 2.7 14.2 1.0 FE1 A:SF4501 2.7 9.9 1.0 FE2 A:SF4501 2.7 12.5 1.0 CB A:CYS306 3.5 10.8 1.0 N A:CYS306 3.6 11.4 1.0 N A:MET307 3.9 9.6 1.0 S4 A:SF4501 3.9 11.4 1.0 CD A:PRO285 3.9 12.3 1.0 CA A:CYS306 4.0 10.5 1.0 N A:HIS308 4.1 9.8 1.0 C A:CYS306 4.3 10.3 1.0 CG A:PRO285 4.5 12.7 1.0 CB A:HIS308 4.6 10.1 1.0 C A:ARG305 4.6 11.3 1.0 SG A:CYS284 4.6 14.5 1.0 N A:CYS309 4.7 10.8 1.0 SG A:CYS303 4.7 12.2 1.0 N A:ARG305 4.8 11.9 1.0 SG A:CYS309 4.8 13.0 1.0 CA A:HIS308 4.8 10.5 1.0 C A:MET307 4.8 10.1 1.0 CA A:MET307 4.9 9.6 1.0 CA A:ARG305 4.9 11.7 1.0

Iron binding site 3 out of 36 in the Structure of Desulforubidin From Desulfomicrobium Norvegicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Desulforubidin From Desulfomicrobium Norvegicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:12.5 occ:1.00 FE2 A:SF4501 0.0 12.5 1.0 S3 A:SF4501 2.3 11.6 1.0 S4 A:SF4501 2.3 11.4 1.0 SG A:CYS309 2.3 13.0 1.0 S1 A:SF4501 2.3 12.9 1.0 FE1 A:SF4501 2.6 9.9 1.0 FE4 A:SF4501 2.7 10.0 1.0 FE3 A:SF4501 2.8 14.2 1.0 CB A:CYS309 3.4 11.4 1.0 N A:CYS309 3.8 10.8 1.0 S2 A:SF4501 3.9 12.1 1.0 CA A:CYS309 4.2 11.3 1.0 SD A:MET289 4.2 17.0 1.0 CD1 A:ILE244 4.3 8.9 1.0 CE A:MET289 4.5 13.7 1.0 SG A:CYS303 4.6 12.2 1.0 CD1 A:LEU310 4.7 12.1 1.0 SG A:CYS306 4.8 10.2 1.0 N A:HIS308 4.8 9.8 1.0 SG A:CYS284 4.9 14.5 1.0 C A:HIS308 4.9 10.8 1.0 N A:LEU310 4.9 11.1 1.0

Iron binding site 4 out of 36 in the Structure of Desulforubidin From Desulfomicrobium Norvegicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Desulforubidin From Desulfomicrobium Norvegicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:14.2 occ:1.00 FE3 A:SF4501 0.0 14.2 1.0 S4 A:SF4501 2.3 11.4 1.0 SG A:CYS284 2.3 14.5 1.0 S1 A:SF4501 2.3 12.9 1.0 S2 A:SF4501 2.3 12.1 1.0 FE1 A:SF4501 2.6 9.9 1.0 FE4 A:SF4501 2.7 10.0 1.0 FE2 A:SF4501 2.8 12.5 1.0 CB A:CYS284 3.4 12.5 1.0 S3 A:SF4501 3.9 11.6 1.0 CA A:CYS284 4.0 13.1 1.0 SG A:CYS288 4.0 17.4 1.0 CD A:PRO285 4.0 12.3 1.0 SD A:MET289 4.2 17.0 1.0 OG1 A:THR286 4.3 10.9 1.0 CG A:MET289 4.3 16.1 1.0 N A:PRO285 4.5 12.3 1.0 C A:CYS284 4.6 12.5 1.0 SG A:CYS306 4.6 10.2 1.0 SG A:CYS303 4.7 12.2 1.0 SG A:CYS309 4.9 13.0 1.0 CG A:PRO285 4.9 12.7 1.0

Iron binding site 5 out of 36 in the Structure of Desulforubidin From Desulfomicrobium Norvegicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Desulforubidin From Desulfomicrobium Norvegicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:6.3 occ:1.00 FE1 A:SF4502 0.0 6.3 1.0 S2 A:SF4502 2.3 6.4 1.0 S4 A:SF4502 2.3 6.9 1.0 S3 A:SF4502 2.3 8.2 1.0 SG A:CYS177 2.3 7.6 1.0 FE4 A:SF4502 2.7 6.8 1.0 FE3 A:SF4502 2.7 5.5 1.0 FE2 A:SF4502 2.7 7.8 1.0 CB A:CYS177 3.2 7.4 1.0 N A:GLY220 3.7 9.2 1.0 S1 A:SF4502 3.9 8.0 1.0 CA A:GLY220 4.0 8.5 1.0 N A:GLY179 4.2 8.3 1.0 CA A:GLY179 4.4 8.9 1.0 N A:CYS221 4.5 8.6 1.0 CB A:CYS225 4.5 9.0 1.0 C A:GLY220 4.6 9.3 1.0 CA A:CYS177 4.6 7.1 1.0 SG A:CYS225 4.6 10.5 1.0 SG A:CYS183 4.8 10.9 1.0 C A:ASP219 4.9 9.4 1.0 SG A:CYS221 4.9 8.7 1.0 C A:CYS177 4.9 7.0 1.0 N A:LEU178 4.9 7.0 1.0

Iron binding site 6 out of 36 in the Structure of Desulforubidin From Desulfomicrobium Norvegicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Desulforubidin From Desulfomicrobium Norvegicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:6.8 occ:1.00 FE4 A:SF4502 0.0 6.8 1.0 SG A:CYS225 2.3 10.5 1.0 S1 A:SF4502 2.3 8.0 1.0 S2 A:SF4502 2.3 6.4 1.0 S3 A:SF4502 2.3 8.2 1.0 FE3 A:SF4502 2.7 5.5 1.0 FE1 A:SF4502 2.7 6.3 1.0 FE2 A:SF4502 2.7 7.8 1.0 CB A:CYS225 3.0 9.0 1.0 S4 A:SF4502 3.9 6.9 1.0 N A:CYS225 4.0 8.5 1.0 CA A:CYS225 4.1 8.9 1.0 FE A:SRM503 4.4 7.9 1.0 CB A:ASN223 4.5 6.4 1.0 CB A:CYS177 4.5 7.4 1.0 NA A:SRM503 4.5 9.6 1.0 SG A:CYS221 4.6 8.7 1.0 SG A:CYS177 4.6 7.6 1.0 CDA A:SRM503 4.8 10.4 1.0 ND A:SRM503 4.8 9.8 1.0 SG A:CYS183 4.8 10.9 1.0 C1A A:SRM503 4.9 11.3 1.0 N A:GLY224 4.9 6.4 1.0 NB A:SRM503 4.9 9.3 1.0

Iron binding site 7 out of 36 in the Structure of Desulforubidin From Desulfomicrobium Norvegicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Desulforubidin From Desulfomicrobium Norvegicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:7.8 occ:1.00 FE2 A:SF4502 0.0 7.8 1.0 S3 A:SF4502 2.3 8.2 1.0 S4 A:SF4502 2.3 6.9 1.0 SG A:CYS183 2.3 10.9 1.0 S1 A:SF4502 2.3 8.0 1.0 FE3 A:SF4502 2.7 5.5 1.0 FE1 A:SF4502 2.7 6.3 1.0 FE4 A:SF4502 2.7 6.8 1.0 CB A:CYS183 3.3 9.6 1.0 S2 A:SF4502 3.9 6.4 1.0 CDA A:SRM503 4.2 10.4 1.0 SG A:CYS221 4.5 8.7 1.0 CB A:TRP185 4.6 7.8 1.0 CE3 A:TRP185 4.6 8.6 1.0 CEA A:SRM503 4.7 14.0 1.0 N A:ALA186 4.7 9.4 1.0 CA A:CYS183 4.7 9.5 1.0 SG A:CYS225 4.8 10.5 1.0 SG A:CYS177 4.9 7.6 1.0 O A:GLY179 4.9 10.3 1.0 N A:TRP185 5.0 8.5 1.0

Iron binding site 8 out of 36 in the Structure of Desulforubidin From Desulfomicrobium Norvegicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Desulforubidin From Desulfomicrobium Norvegicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:5.5 occ:1.00 FE3 A:SF4502 0.0 5.5 1.0 S2 A:SF4502 2.2 6.4 1.0 SG A:CYS221 2.3 8.7 1.0 S4 A:SF4502 2.3 6.9 1.0 S1 A:SF4502 2.3 8.0 1.0 FE4 A:SF4502 2.7 6.8 1.0 FE2 A:SF4502 2.7 7.8 1.0 FE1 A:SF4502 2.7 6.3 1.0 CB A:CYS221 3.3 8.5 1.0 N A:CYS221 3.4 8.6 1.0 CA A:CYS221 3.8 8.6 1.0 S3 A:SF4502 3.8 8.2 1.0 C A:GLY220 4.1 9.3 1.0 C A:CYS221 4.1 8.2 1.0 O A:CYS221 4.2 9.0 1.0 CA A:GLY220 4.4 8.5 1.0 CB A:ASN223 4.5 6.4 1.0 N A:GLY220 4.5 9.2 1.0 SG A:CYS183 4.6 10.9 1.0 SG A:CYS225 4.7 10.5 1.0 CB A:TRP185 4.7 7.8 1.0 N A:ASN223 4.8 7.2 1.0 ND2 A:ASN223 4.8 2.0 1.0 SG A:CYS177 4.8 7.6 1.0 O A:GLY220 4.8 9.7 1.0 N A:GLY224 4.9 6.4 1.0

Iron binding site 9 out of 36 in the Structure of Desulforubidin From Desulfomicrobium Norvegicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of Desulforubidin From Desulfomicrobium Norvegicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe503 b:7.9 occ:1.00 FE A:SRM503 0.0 7.9 1.0 NB A:SRM503 2.1 9.3 1.0 NA A:SRM503 2.1 9.6 1.0 NC A:SRM503 2.1 9.6 1.0 ND A:SRM503 2.1 9.8 1.0 SG A:CYS225 2.5 10.5 1.0 O A:HOH2308 2.7 15.1 1.0 C4B A:SRM503 3.0 10.2 1.0 C4A A:SRM503 3.0 8.5 1.0 C1B A:SRM503 3.0 9.5 1.0 C1A A:SRM503 3.1 11.3 1.0 C4D A:SRM503 3.1 10.0 1.0 C1C A:SRM503 3.1 12.1 1.0 C4C A:SRM503 3.1 8.4 1.0 C1D A:SRM503 3.1 9.2 1.0 CHB A:SRM503 3.4 8.9 1.0 CHA A:SRM503 3.4 11.1 1.0 CHC A:SRM503 3.4 11.0 1.0 CHD A:SRM503 3.4 7.8 1.0 CB A:CYS225 3.7 9.0 1.0 C3B A:SRM503 4.3 9.9 1.0 C3A A:SRM503 4.3 8.8 1.0 C2B A:SRM503 4.4 9.8 1.0 C2A A:SRM503 4.4 11.2 1.0 FE4 A:SF4502 4.4 6.8 1.0 C3D A:SRM503 4.4 10.3 1.0 CBA A:SRM503 4.4 13.7 1.0 C2C A:SRM503 4.4 12.0 1.0 C3C A:SRM503 4.4 10.9 1.0 O A:HOH2307 4.4 16.2 1.0 C2D A:SRM503 4.4 11.3 1.0 CA A:CYS225 4.5 8.9 1.0 CAB A:SRM503 4.9 10.8 1.0 O A:HOH2315 4.9 12.9 1.0 CDB A:SRM503 4.9 8.8 1.0 NH2 B:ARG183 4.9 10.8 1.0 O A:HOH2314 5.0 11.6 1.0 CAA A:SRM503 5.0 8.7 1.0 CDA A:SRM503 5.0 10.4 1.0

Iron binding site 10 out of 36 in the Structure of Desulforubidin From Desulfomicrobium Norvegicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of Desulforubidin From Desulfomicrobium Norvegicum within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:14.2 occ:1.00 FE1 B:SF4501 0.0 14.2 1.0 S4 B:SF4501 2.3 14.5 1.0 SG B:CYS231 2.3 16.6 1.0 S2 B:SF4501 2.3 16.4 1.0 S3 B:SF4501 2.3 16.2 1.0 FE4 B:SF4501 2.6 14.4 1.0 FE2 B:SF4501 2.6 15.5 1.0 FE3 B:SF4501 2.8 13.6 1.0 CB B:CYS231 3.3 14.6 1.0 S1 B:SF4501 3.8 13.5 1.0 CA B:CYS231 3.9 15.4 1.0 CG1 B:ILE236 4.4 16.9 1.0 CD B:PRO232 4.4 16.5 1.0 CB B:ALA235 4.5 16.9 1.0 CD1 B:ILE236 4.5 17.8 1.0 SG B:CYS266 4.6 14.3 1.0 CG2 B:VAL233 4.8 15.0 1.0 C B:CYS231 4.8 16.0 1.0 SG B:CYS263 4.8 19.0 1.0 SG B:CYS269 4.8 12.6 1.0 N B:PRO232 4.9 16.6 1.0 N B:CYS231 5.0 14.8 1.0

T.F.Oliveira, E.Franklin, J.P.Afonso, A.R.Khan, N.J.Oldham, I.A.C.Pereira, M.Archer. Structural Insights Into Dissimilatory Sulfite Reductases: Structure of Desulforubidin From Desulfomicrobium Norvegicum Front.Microbiol. V 2 71 2011.
ISSN: ISSN 1664-302X
PubMed: 21833321
DOI: 10.3389/FMICB.2011.00071