Atomistry » Iron » PDB 2xv1-2yde » 2xvx
Atomistry »
  Iron »
    PDB 2xv1-2yde »
      2xvx »

Iron in PDB 2xvx: Cobalt Chelatase Cbik (Periplasmatic) From Desulvobrio Vulgaris Hildenborough (Native)

Enzymatic activity of Cobalt Chelatase Cbik (Periplasmatic) From Desulvobrio Vulgaris Hildenborough (Native)

All present enzymatic activity of Cobalt Chelatase Cbik (Periplasmatic) From Desulvobrio Vulgaris Hildenborough (Native):
4.99.1.3;

Protein crystallography data

The structure of Cobalt Chelatase Cbik (Periplasmatic) From Desulvobrio Vulgaris Hildenborough (Native), PDB code: 2xvx was solved by C.V.Romao, S.A.L.Lobo, M.A.Carrondo, L.M.Saraiva, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 85.60 / 1.90
Space group I 4 2 2 1
Cell size a, b, c (Å), α, β, γ (°) 121.062, 121.062, 120.246, 90.00, 90.00, 90.00
R / Rfree (%) 17.351 / 19.875

Other elements in 2xvx:

The structure of Cobalt Chelatase Cbik (Periplasmatic) From Desulvobrio Vulgaris Hildenborough (Native) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Cobalt Chelatase Cbik (Periplasmatic) From Desulvobrio Vulgaris Hildenborough (Native) (pdb code 2xvx). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Cobalt Chelatase Cbik (Periplasmatic) From Desulvobrio Vulgaris Hildenborough (Native), PDB code: 2xvx:

Iron binding site 1 out of 1 in 2xvx

Go back to Iron Binding Sites List in 2xvx
Iron binding site 1 out of 1 in the Cobalt Chelatase Cbik (Periplasmatic) From Desulvobrio Vulgaris Hildenborough (Native)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cobalt Chelatase Cbik (Periplasmatic) From Desulvobrio Vulgaris Hildenborough (Native) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1270

b:18.2
occ:0.50
 FE A:HEM1270 0.0 18.2 0.5
NC A:HEM1270 2.0 19.8 0.5
NE2 A:HIS96 2.0 21.7 1.0
ND A:HEM1270 2.0 17.0 0.5
NB A:HEM1270 2.1 19.9 0.5
NA A:HEM1270 2.1 20.7 0.5
CD2 A:HIS96 2.9 22.1 1.0
C4C A:HEM1270 2.9 22.1 0.5
C1C A:HEM1270 3.0 21.1 0.5
CE1 A:HIS96 3.0 22.0 1.0
C1D A:HEM1270 3.0 21.0 0.5
C4D A:HEM1270 3.1 21.6 0.5
C4B A:HEM1270 3.1 20.9 0.5
C1A A:HEM1270 3.1 23.4 0.5
C1B A:HEM1270 3.1 21.1 0.5
C4A A:HEM1270 3.2 23.4 0.5
CHD A:HEM1270 3.3 20.1 0.5
CHC A:HEM1270 3.4 20.5 0.5
CHA A:HEM1270 3.4 20.7 0.5
CHB A:HEM1270 3.6 21.9 0.5
CG A:HIS96 4.1 21.4 1.0
ND1 A:HIS96 4.1 22.1 1.0
C3C A:HEM1270 4.1 21.5 0.5
C2C A:HEM1270 4.2 20.3 0.5
C2D A:HEM1270 4.3 21.7 0.5
C3D A:HEM1270 4.3 20.8 0.5
C3B A:HEM1270 4.3 22.1 0.5
C2B A:HEM1270 4.4 22.2 0.5
C2A A:HEM1270 4.4 25.8 0.5
C3A A:HEM1270 4.4 25.0 0.5

Reference:

C.V.Romao, D.Ladakis, S.A.L.Lobo, M.A.Carrondo, A.A.Brindley, E.Deery, P.M.Matias, R.W.Pickersgill, L.M.Saraiva, M.J.Warren. Evolution in A Family of Chelatases Facilitated By the Introduction of Active Site Asymmetry and Protein Oligomerization. Proc.Natl.Acad.Sci.Usa V. 108 97 2011.
ISSN: ISSN 0027-8424
PubMed: 21173279
DOI: 10.1073/PNAS.1014298108
Page generated: Sun Aug 4 05:04:10 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy