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Iron in PDB 2y0i: Factor Inhibiting Hif-1 Alpha in Complex with Tankyrase-2 (TNKS2) Fragment Peptide (21-Mer)

Enzymatic activity of Factor Inhibiting Hif-1 Alpha in Complex with Tankyrase-2 (TNKS2) Fragment Peptide (21-Mer)

All present enzymatic activity of Factor Inhibiting Hif-1 Alpha in Complex with Tankyrase-2 (TNKS2) Fragment Peptide (21-Mer):
1.14.11.16; 2.4.2.30;

Protein crystallography data

The structure of Factor Inhibiting Hif-1 Alpha in Complex with Tankyrase-2 (TNKS2) Fragment Peptide (21-Mer), PDB code: 2y0i was solved by R.Chowdhury, M.A.Mcdonough, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.94 / 2.28
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 86.490, 86.490, 146.710, 90.00, 90.00, 90.00
R / Rfree (%) 23 / 24.8

Iron Binding Sites:

The binding sites of Iron atom in the Factor Inhibiting Hif-1 Alpha in Complex with Tankyrase-2 (TNKS2) Fragment Peptide (21-Mer) (pdb code 2y0i). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Factor Inhibiting Hif-1 Alpha in Complex with Tankyrase-2 (TNKS2) Fragment Peptide (21-Mer), PDB code: 2y0i:

Iron binding site 1 out of 1 in 2y0i

Go back to Iron Binding Sites List in 2y0i
Iron binding site 1 out of 1 in the Factor Inhibiting Hif-1 Alpha in Complex with Tankyrase-2 (TNKS2) Fragment Peptide (21-Mer)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Factor Inhibiting Hif-1 Alpha in Complex with Tankyrase-2 (TNKS2) Fragment Peptide (21-Mer) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1350

b:51.0
occ:1.00
O2 A:AKG1351 1.9 46.2 1.0
OD2 A:ASP201 2.1 33.8 1.0
O5 A:AKG1351 2.1 39.1 1.0
O A:HOH2050 2.1 40.1 1.0
NE2 A:HIS199 2.3 39.7 1.0
NE2 A:HIS279 2.4 37.1 1.0
C1 A:AKG1351 2.6 39.8 1.0
C2 A:AKG1351 2.7 40.2 1.0
CG A:ASP201 3.1 35.1 1.0
CE1 A:HIS199 3.2 37.8 1.0
CD2 A:HIS199 3.3 37.5 1.0
CE1 A:HIS279 3.3 35.5 1.0
CD2 A:HIS279 3.3 35.8 1.0
OD1 A:ASP201 3.5 30.9 1.0
O1 A:AKG1351 3.9 38.6 1.0
O A:HOH2051 4.1 32.5 1.0
C3 A:AKG1351 4.2 38.6 1.0
CZ2 A:TRP296 4.2 45.6 1.0
ND1 A:HIS199 4.3 37.7 1.0
CG A:HIS199 4.4 38.3 1.0
CB A:ASP201 4.4 34.4 1.0
ND1 A:HIS279 4.4 37.9 1.0
CG A:HIS279 4.5 39.3 1.0
CD2 S:HIS553 4.5 72.9 1.0
CG S:HIS553 4.6 75.7 1.0
C4 A:AKG1351 4.8 38.7 1.0
CB S:HIS553 4.9 75.4 1.0
NE1 A:TRP296 5.0 42.8 1.0
NE2 S:HIS553 5.0 71.6 1.0

Reference:

M.Yang, R.Chowdhury, W.Ge, R.B.Hamed, M.A.Mcdonough, T.D.Claridge, B.M.Kessler, M.E.Cockman, P.J.Ratcliffe, C.J.Schofield. Factor-Inhibiting Hypoxia-Inducible Factor (Fih) Catalyses the Post-Translational Hydroxylation of Histidinyl Residues Within Ankyrin Repeat Domains. Febs J. V. 278 1086 2011.
ISSN: ISSN 1742-4658
PubMed: 21251231
DOI: 10.1111/J.1742-4658.2011.08022.X
Page generated: Sun Dec 13 14:57:17 2020

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