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Iron in PDB 2ycc: Oxidation State-Dependent Conformational Changes in Cytochrome C

Protein crystallography data

The structure of Oxidation State-Dependent Conformational Changes in Cytochrome C, PDB code: 2ycc was solved by A.M.Berghuis, G.D.Brayer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 36.470, 36.470, 137.240, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Oxidation State-Dependent Conformational Changes in Cytochrome C (pdb code 2ycc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Oxidation State-Dependent Conformational Changes in Cytochrome C, PDB code: 2ycc:

Iron binding site 1 out of 1 in 2ycc

Go back to Iron Binding Sites List in 2ycc
Iron binding site 1 out of 1 in the Oxidation State-Dependent Conformational Changes in Cytochrome C


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Oxidation State-Dependent Conformational Changes in Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe104

b:8.6
occ:1.00
FE A:HEM104 0.0 8.6 1.0
NA A:HEM104 2.0 7.8 1.0
NB A:HEM104 2.0 4.5 1.0
NE2 A:HIS18 2.0 2.5 1.0
NC A:HEM104 2.0 4.6 1.0
ND A:HEM104 2.0 6.8 1.0
SD A:MET80 2.4 11.5 1.0
C1B A:HEM104 3.0 4.6 1.0
C4B A:HEM104 3.0 3.8 1.0
CE1 A:HIS18 3.0 5.7 1.0
C1C A:HEM104 3.0 4.4 1.0
C1A A:HEM104 3.0 8.0 1.0
C4A A:HEM104 3.0 8.7 1.0
C1D A:HEM104 3.1 6.5 1.0
C4C A:HEM104 3.1 6.2 1.0
C4D A:HEM104 3.1 7.7 1.0
CD2 A:HIS18 3.1 6.8 1.0
CHB A:HEM104 3.3 6.8 1.0
CHC A:HEM104 3.3 4.7 1.0
CE A:MET80 3.4 11.8 1.0
CHA A:HEM104 3.4 8.1 1.0
CHD A:HEM104 3.4 4.7 1.0
CG A:MET80 3.7 11.8 1.0
ND1 A:HIS18 4.1 3.0 1.0
C2B A:HEM104 4.2 3.9 1.0
C3B A:HEM104 4.2 3.2 1.0
CG A:HIS18 4.2 2.0 1.0
C2A A:HEM104 4.2 8.3 1.0
C3A A:HEM104 4.2 7.5 1.0
C2C A:HEM104 4.3 6.0 1.0
C3D A:HEM104 4.3 5.9 1.0
C2D A:HEM104 4.3 6.3 1.0
C3C A:HEM104 4.3 4.7 1.0
OH A:TYR67 4.5 27.0 1.0
CB A:MET80 4.6 11.9 1.0

Reference:

A.M.Berghuis, G.D.Brayer. Oxidation State-Dependent Conformational Changes in Cytochrome C. J.Mol.Biol. V. 223 959 1992.
ISSN: ISSN 0022-2836
PubMed: 1311391
DOI: 10.1016/0022-2836(92)90255-I
Page generated: Sun Dec 13 14:57:46 2020

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