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Iron in PDB 2yli: Recombinant Native Cytochrome C Prime From Alcaligenes Xylosoxidans in Its Ferrous Form at 1.45 A

Protein crystallography data

The structure of Recombinant Native Cytochrome C Prime From Alcaligenes Xylosoxidans in Its Ferrous Form at 1.45 A, PDB code: 2yli was solved by S.V.Antonyuk, R.R.Eady, S.S.Hasnain, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.13 / 1.45
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 53.266, 53.266, 180.731, 90.00, 90.00, 120.00
R / Rfree (%) 15 / 18.4

Iron Binding Sites:

The binding sites of Iron atom in the Recombinant Native Cytochrome C Prime From Alcaligenes Xylosoxidans in Its Ferrous Form at 1.45 A (pdb code 2yli). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Recombinant Native Cytochrome C Prime From Alcaligenes Xylosoxidans in Its Ferrous Form at 1.45 A, PDB code: 2yli:

Iron binding site 1 out of 1 in 2yli

Go back to Iron Binding Sites List in 2yli
Iron binding site 1 out of 1 in the Recombinant Native Cytochrome C Prime From Alcaligenes Xylosoxidans in Its Ferrous Form at 1.45 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Recombinant Native Cytochrome C Prime From Alcaligenes Xylosoxidans in Its Ferrous Form at 1.45 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe128

b:15.6
occ:1.00
FE A:HEC128 0.0 15.6 1.0
NA A:HEC128 2.0 14.8 1.0
ND A:HEC128 2.0 14.8 1.0
NC A:HEC128 2.1 15.5 1.0
NB A:HEC128 2.1 15.2 1.0
NE2 A:HIS120 2.2 16.8 1.0
C1A A:HEC128 3.0 15.6 1.0
C4A A:HEC128 3.1 15.4 1.0
C4C A:HEC128 3.1 14.5 1.0
C1D A:HEC128 3.1 15.0 1.0
C1C A:HEC128 3.1 15.2 1.0
C4D A:HEC128 3.1 14.6 1.0
C1B A:HEC128 3.1 15.8 1.0
C4B A:HEC128 3.1 15.2 1.0
CD2 A:HIS120 3.1 16.5 1.0
CE1 A:HIS120 3.2 17.7 1.0
CHD A:HEC128 3.4 14.4 1.0
CHB A:HEC128 3.4 14.9 1.0
CHA A:HEC128 3.4 15.7 1.0
CHC A:HEC128 3.5 14.7 1.0
CD2 A:LEU16 3.7 15.0 1.0
ND1 A:HIS120 4.3 17.9 1.0
C3A A:HEC128 4.3 14.5 1.0
CG A:HIS120 4.3 17.2 1.0
C3C A:HEC128 4.3 14.6 1.0
C2D A:HEC128 4.3 14.6 1.0
C2A A:HEC128 4.3 15.6 1.0
C2C A:HEC128 4.3 16.2 1.0
C3B A:HEC128 4.3 15.8 1.0
C2B A:HEC128 4.3 17.0 1.0
C3D A:HEC128 4.3 14.8 1.0
NH1 A:ARG124 4.4 23.3 0.7
CD1 A:LEU16 4.4 15.0 1.0
CG A:LEU16 4.5 14.7 1.0
NH1 A:ARG124 4.5 16.8 0.3
CB A:LEU16 4.7 14.7 1.0
CE A:MET19 5.0 16.0 0.3

Reference:

S.V.Antonyuk, N.Rustage, C.A.Petersen, J.L.Arnst, D.J.Heyes, R.Sharma, N.G.Berry, N.S.Scrutton, R.R.Eady, C.R.Andrew, S.S.Hasnain. Carbon Monoxide Poisoning Is Prevented By the Energy Costs of Conformational Changes in Gas- Binding Haemproteins. Proc.Natl.Acad.Sci.Usa V. 108 15780 2011.
ISSN: ISSN 0027-8424
PubMed: 21900609
DOI: 10.1073/PNAS.1109051108
Page generated: Sun Dec 13 14:58:24 2020

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