Iron in PDB 2yu1: Crystal Structure of HJHDM1A Complexed with A-Ketoglutarate

All present enzymatic activity of Crystal Structure of HJHDM1A Complexed with A-Ketoglutarate:
1.14.11.27;

The structure of Crystal Structure of HJHDM1A Complexed with A-Ketoglutarate, PDB code: 2yu1 was solved by Z.Han, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.70
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	81.255, 81.255, 124.010, 90.00, 90.00, 120.00
R / Rfree (%)	23.8 / 27.3

The binding sites of Iron atom in the Crystal Structure of HJHDM1A Complexed with A-Ketoglutarate (pdb code 2yu1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of HJHDM1A Complexed with A-Ketoglutarate, PDB code: 2yu1:

Iron binding site 1 out of 1 in the Crystal Structure of HJHDM1A Complexed with A-Ketoglutarate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of HJHDM1A Complexed with A-Ketoglutarate within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe600 b:33.7 occ:1.00 O1 A:AKG701 1.9 37.6 1.0 O2 A:AKG701 2.0 39.1 1.0 OD1 A:ASP214 2.0 23.2 1.0 C1 A:AKG701 2.0 39.3 1.0 NE2 A:HIS284 2.2 32.1 1.0 NE2 A:HIS212 2.4 13.9 1.0 CG A:ASP214 2.7 22.2 1.0 OD2 A:ASP214 2.8 21.7 1.0 CE1 A:HIS284 3.1 32.2 1.0 CE1 A:HIS212 3.2 14.6 1.0 CD2 A:HIS284 3.3 31.5 1.0 CD2 A:HIS212 3.5 14.0 1.0 C2 A:AKG701 3.5 38.3 1.0 O A:HOH705 3.9 48.3 1.0 OH A:TYR222 4.1 37.8 1.0 O5 A:AKG701 4.1 37.8 1.0 CB A:ASP214 4.2 22.6 1.0 ND1 A:HIS284 4.3 32.1 1.0 CG A:HIS284 4.4 31.3 1.0 ND1 A:HIS212 4.4 14.2 1.0 C3 A:AKG701 4.5 34.4 1.0 CG A:HIS212 4.5 14.9 1.0 N A:ASP214 4.7 22.4 1.0 CA A:ASP214 4.7 23.2 1.0 CG1 A:VAL220 5.0 36.6 1.0 CE2 A:TYR222 5.0 40.4 1.0

Z.Han, P.Liu, L.Gu, Y.Zhang, H.Li, S.Chen, J.Chai. Structural Basis For Histone Demethylation By JHDM1 To Be Published.