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Iron in PDB 2yu2: Crystal Structure of HJHDM1A Without A-Ketoglutarate

Enzymatic activity of Crystal Structure of HJHDM1A Without A-Ketoglutarate

All present enzymatic activity of Crystal Structure of HJHDM1A Without A-Ketoglutarate:
1.14.11.27;

Protein crystallography data

The structure of Crystal Structure of HJHDM1A Without A-Ketoglutarate, PDB code: 2yu2 was solved by Z.Han, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.70
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 81.150, 81.150, 124.470, 90.00, 90.00, 120.00
R / Rfree (%) 24.8 / 28.7

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of HJHDM1A Without A-Ketoglutarate (pdb code 2yu2). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of HJHDM1A Without A-Ketoglutarate, PDB code: 2yu2:

Iron binding site 1 out of 1 in 2yu2

Go back to Iron Binding Sites List in 2yu2
Iron binding site 1 out of 1 in the Crystal Structure of HJHDM1A Without A-Ketoglutarate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of HJHDM1A Without A-Ketoglutarate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe600

b:46.2
occ:1.00
NE2 A:HIS212 2.1 18.3 1.0
OD1 A:ASP214 2.1 34.4 1.0
NE2 A:HIS284 2.3 44.5 1.0
CE1 A:HIS212 3.0 23.5 1.0
CG A:ASP214 3.1 32.7 1.0
CD2 A:HIS212 3.1 19.7 1.0
CD2 A:HIS284 3.3 41.8 1.0
CE1 A:HIS284 3.3 41.6 1.0
OD2 A:ASP214 3.4 32.7 1.0
ND1 A:HIS212 4.2 22.0 1.0
CG A:HIS212 4.2 20.5 1.0
ND1 A:HIS284 4.4 40.2 1.0
CG A:HIS284 4.4 40.0 1.0
CB A:ASP214 4.5 33.2 1.0
N A:ASP214 4.8 31.2 1.0
CA A:ASP214 4.9 33.7 1.0

Reference:

Z.Han, P.Liu, L.Gu, Y.Zhang, H.Li, S.Chen, J.Chai. Structural Basis For Histone Demethylation By JHDM1 To Be Published.
Page generated: Sun Dec 13 14:58:30 2020

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