Iron in PDB 2yyw: The F20M Mutant of Tetraheme Cytochrome C3 From Desulfovibrio Vulgaris Miyazaki F

The structure of The F20M Mutant of Tetraheme Cytochrome C3 From Desulfovibrio Vulgaris Miyazaki F, PDB code: 2yyw was solved by Y.Higuchi, H.Komori, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.33
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	52.158, 67.423, 34.388, 90.00, 90.00, 90.00
R / Rfree (%)	12.3 / n/a

The binding sites of Iron atom in the The F20M Mutant of Tetraheme Cytochrome C3 From Desulfovibrio Vulgaris Miyazaki F (pdb code 2yyw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the The F20M Mutant of Tetraheme Cytochrome C3 From Desulfovibrio Vulgaris Miyazaki F, PDB code: 2yyw:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the The F20M Mutant of Tetraheme Cytochrome C3 From Desulfovibrio Vulgaris Miyazaki F


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The F20M Mutant of Tetraheme Cytochrome C3 From Desulfovibrio Vulgaris Miyazaki F within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1004 b:7.2 occ:1.00 FE A:HEM1004 0.0 7.2 1.0 NE2 A:HIS106 2.0 8.1 1.0 NE2 A:HIS70 2.0 7.9 1.0 NA A:HEM1004 2.1 8.5 1.0 ND A:HEM1004 2.1 7.5 1.0 NC A:HEM1004 2.1 8.6 1.0 NB A:HEM1004 2.1 8.7 1.0 CE1 A:HIS70 2.9 7.6 1.0 CE1 A:HIS106 3.0 7.8 1.0 CD2 A:HIS106 3.0 9.0 1.0 C1C A:HEM1004 3.0 8.6 1.0 C1D A:HEM1004 3.0 7.1 1.0 C4A A:HEM1004 3.0 8.9 1.0 C4C A:HEM1004 3.1 7.7 1.0 C1B A:HEM1004 3.1 8.2 1.0 CD2 A:HIS70 3.1 7.8 1.0 C4D A:HEM1004 3.1 7.8 1.0 C1A A:HEM1004 3.1 8.2 1.0 C4B A:HEM1004 3.1 9.0 1.0 CHB A:HEM1004 3.4 9.8 1.0 CHC A:HEM1004 3.4 8.8 1.0 CHD A:HEM1004 3.4 8.5 1.0 CHA A:HEM1004 3.4 8.2 1.0 ND1 A:HIS106 4.1 8.6 1.0 ND1 A:HIS70 4.1 7.8 1.0 CG A:HIS106 4.2 9.6 1.0 CG A:HIS70 4.2 7.5 1.0 C2C A:HEM1004 4.2 8.0 1.0 C2A A:HEM1004 4.2 8.4 1.0 C2B A:HEM1004 4.2 9.4 1.0 C2D A:HEM1004 4.2 6.6 1.0 C3C A:HEM1004 4.2 7.3 1.0 C3D A:HEM1004 4.3 7.0 1.0 C3A A:HEM1004 4.3 9.1 1.0 C3B A:HEM1004 4.3 10.1 1.0 CE2 A:TYR66 4.7 10.3 1.0 O A:HOH1217 4.9 31.4 1.0

Iron binding site 2 out of 4 in the The F20M Mutant of Tetraheme Cytochrome C3 From Desulfovibrio Vulgaris Miyazaki F


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The F20M Mutant of Tetraheme Cytochrome C3 From Desulfovibrio Vulgaris Miyazaki F within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1002 b:7.1 occ:1.00 FE A:HEM1002 0.0 7.1 1.0 NE2 A:HIS52 2.0 7.7 1.0 NE2 A:HIS35 2.0 7.1 1.0 NC A:HEM1002 2.1 7.9 1.0 ND A:HEM1002 2.1 7.9 1.0 NB A:HEM1002 2.1 7.8 1.0 NA A:HEM1002 2.1 7.5 1.0 CE1 A:HIS52 2.9 7.7 1.0 CE1 A:HIS35 2.9 6.9 1.0 CD2 A:HIS52 3.0 8.3 1.0 C4D A:HEM1002 3.0 7.8 1.0 C1A A:HEM1002 3.0 7.9 1.0 C1C A:HEM1002 3.0 7.9 1.0 CD2 A:HIS35 3.0 7.9 1.0 C4A A:HEM1002 3.0 7.4 1.0 C1D A:HEM1002 3.0 8.9 1.0 C1B A:HEM1002 3.1 7.4 1.0 C4B A:HEM1002 3.1 7.5 1.0 C4C A:HEM1002 3.1 8.2 1.0 CHB A:HEM1002 3.4 8.1 1.0 CHA A:HEM1002 3.4 8.0 1.0 CHC A:HEM1002 3.4 8.3 1.0 CHD A:HEM1002 3.4 9.0 1.0 ND1 A:HIS52 4.1 8.7 1.0 ND1 A:HIS35 4.1 7.5 1.0 CG A:HIS52 4.1 7.8 1.0 CG A:HIS35 4.2 7.0 1.0 C3D A:HEM1002 4.2 9.4 1.0 C2A A:HEM1002 4.2 7.7 1.0 C2C A:HEM1002 4.2 8.5 1.0 C3A A:HEM1002 4.2 7.7 1.0 C2D A:HEM1002 4.3 9.6 1.0 C3C A:HEM1002 4.3 8.0 1.0 C2B A:HEM1002 4.3 7.2 1.0 C3B A:HEM1002 4.3 7.8 1.0

Iron binding site 3 out of 4 in the The F20M Mutant of Tetraheme Cytochrome C3 From Desulfovibrio Vulgaris Miyazaki F


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The F20M Mutant of Tetraheme Cytochrome C3 From Desulfovibrio Vulgaris Miyazaki F within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1001 b:8.4 occ:1.00 FE A:HEM1001 0.0 8.4 1.0 NE2 A:HIS34 2.0 8.4 1.0 NE2 A:HIS22 2.0 8.8 1.0 ND A:HEM1001 2.1 8.9 1.0 NC A:HEM1001 2.1 8.7 1.0 NB A:HEM1001 2.1 9.8 1.0 NA A:HEM1001 2.1 9.4 1.0 CE1 A:HIS34 2.9 8.5 1.0 CE1 A:HIS22 3.0 8.5 1.0 CD2 A:HIS34 3.0 8.4 1.0 CD2 A:HIS22 3.0 9.8 1.0 C4A A:HEM1001 3.0 10.7 1.0 C1C A:HEM1001 3.0 9.3 1.0 C1B A:HEM1001 3.0 10.6 1.0 C1A A:HEM1001 3.1 9.3 1.0 C1D A:HEM1001 3.1 8.4 1.0 C4D A:HEM1001 3.1 10.1 1.0 C4B A:HEM1001 3.1 9.9 1.0 C4C A:HEM1001 3.1 8.5 1.0 CHB A:HEM1001 3.4 10.7 1.0 CHC A:HEM1001 3.4 10.4 1.0 CHD A:HEM1001 3.4 9.3 1.0 CHA A:HEM1001 3.5 9.2 1.0 ND1 A:HIS34 4.1 8.7 1.0 ND1 A:HIS22 4.1 8.9 1.0 CG A:HIS34 4.1 7.6 1.0 CG A:HIS22 4.1 9.8 1.0 C3A A:HEM1001 4.2 11.1 1.0 C2B A:HEM1001 4.2 11.7 1.0 C2A A:HEM1001 4.2 11.1 1.0 C3D A:HEM1001 4.2 8.7 1.0 C2C A:HEM1001 4.2 9.7 1.0 C2D A:HEM1001 4.2 8.3 1.0 C3B A:HEM1001 4.3 11.2 1.0 C3C A:HEM1001 4.3 9.5 1.0 CD A:PRO5 4.6 15.1 1.0

Iron binding site 4 out of 4 in the The F20M Mutant of Tetraheme Cytochrome C3 From Desulfovibrio Vulgaris Miyazaki F


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The F20M Mutant of Tetraheme Cytochrome C3 From Desulfovibrio Vulgaris Miyazaki F within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1003 b:8.2 occ:1.00 FE A:HEM1003 0.0 8.2 1.0 NE2 A:HIS25 2.0 9.0 1.0 NE2 A:HIS83 2.0 9.1 1.0 ND A:HEM1003 2.0 9.3 1.0 NA A:HEM1003 2.1 9.7 1.0 NC A:HEM1003 2.1 8.8 1.0 NB A:HEM1003 2.1 9.1 1.0 CE1 A:HIS83 3.0 9.5 1.0 CE1 A:HIS25 3.0 9.5 1.0 CD2 A:HIS25 3.0 9.2 1.0 C4D A:HEM1003 3.0 10.2 1.0 C1D A:HEM1003 3.0 9.9 1.0 C1B A:HEM1003 3.0 8.5 1.0 C1A A:HEM1003 3.0 10.8 1.0 C1C A:HEM1003 3.1 7.6 1.0 C4B A:HEM1003 3.1 8.3 1.0 CD2 A:HIS83 3.1 9.5 1.0 C4A A:HEM1003 3.1 9.3 1.0 C4C A:HEM1003 3.1 9.1 1.0 CHA A:HEM1003 3.4 10.8 1.0 CHC A:HEM1003 3.4 8.4 1.0 CHD A:HEM1003 3.4 10.8 1.0 CHB A:HEM1003 3.4 9.1 1.0 ND1 A:HIS25 4.1 10.7 1.0 ND1 A:HIS83 4.1 8.7 1.0 CG A:HIS25 4.1 9.3 1.0 CG A:HIS83 4.2 8.9 1.0 C3D A:HEM1003 4.2 10.4 1.0 C2D A:HEM1003 4.2 10.8 1.0 C3B A:HEM1003 4.3 8.0 1.0 C2B A:HEM1003 4.3 8.3 1.0 C2A A:HEM1003 4.3 10.7 1.0 C3A A:HEM1003 4.3 10.2 1.0 C2C A:HEM1003 4.3 9.5 1.0 C3C A:HEM1003 4.3 9.4 1.0

Y.Takayama, H.Komori, K.Morita, Y.Higuchi, H.Akutsu. Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome C3 From Desulfovibrio Vulgaris Miyazaki F To Be Published.