Iron in PDB 2z6f: Crystal Structure of Neat Domain From Staphylococcus Aureus in Complex with Heme

The structure of Crystal Structure of Neat Domain From Staphylococcus Aureus in Complex with Heme, PDB code: 2z6f was solved by Y.Tanaka, A.Suenaga, K.Tsumoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	17.62 / 1.90
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	49.217, 75.686, 39.274, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 24.2

The binding sites of Iron atom in the Crystal Structure of Neat Domain From Staphylococcus Aureus in Complex with Heme (pdb code 2z6f). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Neat Domain From Staphylococcus Aureus in Complex with Heme, PDB code: 2z6f:

Iron binding site 1 out of 1 in the Crystal Structure of Neat Domain From Staphylococcus Aureus in Complex with Heme


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Neat Domain From Staphylococcus Aureus in Complex with Heme within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe3747 b:16.2 occ:1.00 FE A:HEM3747 0.0 16.2 1.0 NB A:HEM3747 2.0 18.0 1.0 NC A:HEM3747 2.1 15.6 1.0 NA A:HEM3747 2.1 15.7 1.0 ND A:HEM3747 2.2 13.8 1.0 OH A:TYR642 2.2 16.5 1.0 C1B A:HEM3747 3.0 15.8 1.0 C4C A:HEM3747 3.0 14.4 1.0 C4B A:HEM3747 3.1 14.7 1.0 C1D A:HEM3747 3.1 12.9 1.0 C4A A:HEM3747 3.1 16.1 1.0 CZ A:TYR642 3.1 15.9 1.0 C1C A:HEM3747 3.1 16.1 1.0 C1A A:HEM3747 3.2 16.9 1.0 C4D A:HEM3747 3.2 13.8 1.0 CHD A:HEM3747 3.4 12.1 1.0 CHB A:HEM3747 3.4 15.0 1.0 CHC A:HEM3747 3.5 15.8 1.0 CHA A:HEM3747 3.6 14.0 1.0 CG1 A:VAL564 3.7 12.3 1.0 CE2 A:TYR642 3.8 15.3 1.0 CE1 A:TYR642 4.0 13.7 1.0 OH A:TYR646 4.1 17.6 1.0 C3B A:HEM3747 4.3 15.9 1.0 C2B A:HEM3747 4.3 14.3 1.0 C3C A:HEM3747 4.3 14.8 1.0 C3A A:HEM3747 4.3 17.9 1.0 CB A:VAL564 4.3 14.2 1.0 C2D A:HEM3747 4.3 14.3 1.0 C2C A:HEM3747 4.3 13.5 1.0 C2A A:HEM3747 4.4 17.7 1.0 CE1 A:TYR646 4.4 11.3 1.0 C3D A:HEM3747 4.4 12.9 1.0 CZ A:TYR646 4.5 16.6 1.0 CG2 A:VAL564 4.7 14.8 1.0 CG2 A:VAL635 4.9 14.9 1.0

M.Watanabe, Y.Tanaka, A.Suenaga, M.Kuroda, M.Yao, N.Watanabe, F.Arisaka, T.Ohta, I.Tanaka, K.Tsumoto. Structural Basis For Multimeric Heme Complexation Through A Specific Protein-Heme Interaction: the Case of the Third Neat Domain of Isdh From Staphylococcus Aureus J.Biol.Chem. V. 283 28649 2008.
ISSN: ISSN 0021-9258
PubMed: 18667422
DOI: 10.1074/JBC.M803383200