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Iron in PDB 2z6n: Crystal Structure of Carbonmonoxy Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea

Protein crystallography data

The structure of Crystal Structure of Carbonmonoxy Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea, PDB code: 2z6n was solved by T.Kuwada, T.Hasegawa, I.Sato, K.Ishikawa, F.Shishikura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.57 / 1.86
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 112.355, 62.104, 53.987, 90.00, 110.22, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Carbonmonoxy Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea (pdb code 2z6n). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Carbonmonoxy Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea, PDB code: 2z6n:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2z6n

Go back to Iron Binding Sites List in 2z6n
Iron binding site 1 out of 2 in the Crystal Structure of Carbonmonoxy Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Carbonmonoxy Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe150

b:23.1
occ:1.00
FE A:HEM150 0.0 23.1 1.0
C A:CMO151 1.8 15.3 1.0
NB A:HEM150 2.0 21.1 1.0
NA A:HEM150 2.0 23.8 1.0
ND A:HEM150 2.1 24.0 1.0
NC A:HEM150 2.1 19.2 1.0
NE2 A:HIS87 2.2 18.8 1.0
O A:CMO151 2.8 28.7 1.0
C4B A:HEM150 3.0 20.1 1.0
C4D A:HEM150 3.1 23.6 1.0
C1C A:HEM150 3.1 17.1 1.0
C1A A:HEM150 3.1 22.4 1.0
C1B A:HEM150 3.1 22.9 1.0
C1D A:HEM150 3.1 18.4 1.0
C4A A:HEM150 3.1 24.4 1.0
C4C A:HEM150 3.1 18.2 1.0
CD2 A:HIS87 3.1 20.0 1.0
CE1 A:HIS87 3.2 21.9 1.0
CHA A:HEM150 3.4 21.5 1.0
CHC A:HEM150 3.4 13.9 1.0
CHB A:HEM150 3.5 24.1 1.0
CHD A:HEM150 3.5 15.8 1.0
ND1 A:HIS87 4.3 20.8 1.0
CG A:HIS87 4.3 16.1 1.0
C3B A:HEM150 4.3 18.4 1.0
C2B A:HEM150 4.3 22.9 1.0
C3D A:HEM150 4.3 21.5 1.0
C2A A:HEM150 4.3 25.4 1.0
C2C A:HEM150 4.3 15.7 1.0
C2D A:HEM150 4.3 20.4 1.0
C3C A:HEM150 4.4 18.2 1.0
C3A A:HEM150 4.4 28.4 1.0
NE2 A:HIS58 4.4 19.1 1.0
CE1 A:HIS58 4.4 21.8 1.0

Iron binding site 2 out of 2 in 2z6n

Go back to Iron Binding Sites List in 2z6n
Iron binding site 2 out of 2 in the Crystal Structure of Carbonmonoxy Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Carbonmonoxy Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe150

b:24.5
occ:1.00
FE B:HEM150 0.0 24.5 1.0
C B:CMO151 1.8 14.2 1.0
NB B:HEM150 2.0 20.7 1.0
NA B:HEM150 2.0 23.6 1.0
NC B:HEM150 2.1 22.7 1.0
ND B:HEM150 2.1 24.0 1.0
NE2 B:HIS92 2.2 22.6 1.0
O B:CMO151 2.8 30.2 1.0
C4B B:HEM150 3.0 19.6 1.0
C1C B:HEM150 3.0 19.8 1.0
C4D B:HEM150 3.1 27.3 1.0
C1B B:HEM150 3.1 21.6 1.0
C1A B:HEM150 3.1 23.0 1.0
CD2 B:HIS92 3.1 21.7 1.0
C1D B:HEM150 3.1 24.5 1.0
C4A B:HEM150 3.1 25.4 1.0
C4C B:HEM150 3.1 20.4 1.0
CE1 B:HIS92 3.2 23.6 1.0
CHC B:HEM150 3.4 20.8 1.0
CHA B:HEM150 3.4 19.2 1.0
CHB B:HEM150 3.5 19.7 1.0
CHD B:HEM150 3.5 22.6 1.0
CG B:HIS92 4.3 24.2 1.0
C3B B:HEM150 4.3 21.1 1.0
ND1 B:HIS92 4.3 19.8 1.0
C2B B:HEM150 4.3 22.2 1.0
C2C B:HEM150 4.3 21.2 1.0
C3D B:HEM150 4.3 24.9 1.0
C2D B:HEM150 4.3 27.5 1.0
C2A B:HEM150 4.3 25.6 1.0
C3C B:HEM150 4.4 21.5 1.0
C3A B:HEM150 4.4 24.5 1.0
NE2 B:HIS63 4.4 24.1 1.0
CE1 B:HIS63 4.7 25.3 1.0
CG2 B:VAL67 4.7 21.3 1.0

Reference:

T.Kuwada, T.Hasegawa, I.Sato, K.Ishikawa, F.Shishikura. Crystal Structure of the Ligated Hemoglobin D From the Aldabra Giant Tortoise, Geochelone Gigantea To Be Published.
Page generated: Sun Dec 13 14:58:42 2020

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