Iron in PDB 2zlu: Horse Methemoglobin High Salt, pH 7.0 (88% Relative Humidity)
Protein crystallography data
The structure of Horse Methemoglobin High Salt, pH 7.0 (88% Relative Humidity), PDB code: 2zlu
was solved by
P.S.Kaushal,
R.Sankaranarayanan,
M.Vijayan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.98 /
2.00
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
108.184,
63.336,
54.409,
90.00,
111.09,
90.00
|
R / Rfree (%)
|
19.3 /
22.2
|
Iron Binding Sites:
The binding sites of Iron atom in the Horse Methemoglobin High Salt, pH 7.0 (88% Relative Humidity)
(pdb code 2zlu). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Horse Methemoglobin High Salt, pH 7.0 (88% Relative Humidity), PDB code: 2zlu:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 2zlu
Go back to
Iron Binding Sites List in 2zlu
Iron binding site 1 out
of 2 in the Horse Methemoglobin High Salt, pH 7.0 (88% Relative Humidity)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Horse Methemoglobin High Salt, pH 7.0 (88% Relative Humidity) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe142
b:26.8
occ:1.00
|
FE
|
A:HEM142
|
0.0
|
26.8
|
1.0
|
NC
|
A:HEM142
|
2.0
|
23.6
|
1.0
|
ND
|
A:HEM142
|
2.1
|
27.5
|
1.0
|
NA
|
A:HEM142
|
2.1
|
26.8
|
1.0
|
NB
|
A:HEM142
|
2.1
|
25.6
|
1.0
|
O
|
A:HOH221
|
2.2
|
24.7
|
1.0
|
NE2
|
A:HIS87
|
2.3
|
27.7
|
1.0
|
C4C
|
A:HEM142
|
3.0
|
22.6
|
1.0
|
C1A
|
A:HEM142
|
3.0
|
27.0
|
1.0
|
C4D
|
A:HEM142
|
3.1
|
27.1
|
1.0
|
C1C
|
A:HEM142
|
3.1
|
24.2
|
1.0
|
C1D
|
A:HEM142
|
3.1
|
26.2
|
1.0
|
CD2
|
A:HIS87
|
3.1
|
27.9
|
1.0
|
C4B
|
A:HEM142
|
3.1
|
24.7
|
1.0
|
C1B
|
A:HEM142
|
3.1
|
26.9
|
1.0
|
C4A
|
A:HEM142
|
3.1
|
26.6
|
1.0
|
CHA
|
A:HEM142
|
3.4
|
25.6
|
1.0
|
CHD
|
A:HEM142
|
3.4
|
23.6
|
1.0
|
CHC
|
A:HEM142
|
3.4
|
23.7
|
1.0
|
CE1
|
A:HIS87
|
3.4
|
26.4
|
1.0
|
CHB
|
A:HEM142
|
3.5
|
27.1
|
1.0
|
NE2
|
A:HIS58
|
4.2
|
27.4
|
1.0
|
C3C
|
A:HEM142
|
4.3
|
22.6
|
1.0
|
C2C
|
A:HEM142
|
4.3
|
24.1
|
1.0
|
C2A
|
A:HEM142
|
4.3
|
29.5
|
1.0
|
C2D
|
A:HEM142
|
4.3
|
25.5
|
1.0
|
C3D
|
A:HEM142
|
4.3
|
28.0
|
1.0
|
CG
|
A:HIS87
|
4.3
|
28.5
|
1.0
|
C3B
|
A:HEM142
|
4.3
|
24.3
|
1.0
|
C3A
|
A:HEM142
|
4.3
|
28.2
|
1.0
|
C2B
|
A:HEM142
|
4.3
|
25.6
|
1.0
|
ND1
|
A:HIS87
|
4.5
|
25.4
|
1.0
|
CE1
|
A:HIS58
|
4.6
|
30.8
|
1.0
|
|
Iron binding site 2 out
of 2 in 2zlu
Go back to
Iron Binding Sites List in 2zlu
Iron binding site 2 out
of 2 in the Horse Methemoglobin High Salt, pH 7.0 (88% Relative Humidity)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Horse Methemoglobin High Salt, pH 7.0 (88% Relative Humidity) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe147
b:27.5
occ:1.00
|
FE
|
B:HEM147
|
0.0
|
27.5
|
1.0
|
NC
|
B:HEM147
|
2.0
|
26.4
|
1.0
|
NA
|
B:HEM147
|
2.0
|
29.6
|
1.0
|
NB
|
B:HEM147
|
2.1
|
25.6
|
1.0
|
ND
|
B:HEM147
|
2.1
|
28.4
|
1.0
|
O
|
B:HOH230
|
2.2
|
22.7
|
1.0
|
NE2
|
B:HIS92
|
2.3
|
32.6
|
1.0
|
C1C
|
B:HEM147
|
3.0
|
26.9
|
1.0
|
C4C
|
B:HEM147
|
3.0
|
27.4
|
1.0
|
C1A
|
B:HEM147
|
3.1
|
30.0
|
1.0
|
C4B
|
B:HEM147
|
3.1
|
27.8
|
1.0
|
C4A
|
B:HEM147
|
3.1
|
29.6
|
1.0
|
C4D
|
B:HEM147
|
3.1
|
30.8
|
1.0
|
C1D
|
B:HEM147
|
3.1
|
27.9
|
1.0
|
C1B
|
B:HEM147
|
3.1
|
27.4
|
1.0
|
CD2
|
B:HIS92
|
3.2
|
33.3
|
1.0
|
CHC
|
B:HEM147
|
3.4
|
27.5
|
1.0
|
CHA
|
B:HEM147
|
3.4
|
30.4
|
1.0
|
CE1
|
B:HIS92
|
3.4
|
33.3
|
1.0
|
CHD
|
B:HEM147
|
3.5
|
28.5
|
1.0
|
CHB
|
B:HEM147
|
3.5
|
30.1
|
1.0
|
NE2
|
B:HIS63
|
4.2
|
25.0
|
1.0
|
C2C
|
B:HEM147
|
4.2
|
27.0
|
1.0
|
C3C
|
B:HEM147
|
4.2
|
28.6
|
1.0
|
C2A
|
B:HEM147
|
4.3
|
30.9
|
1.0
|
C3A
|
B:HEM147
|
4.3
|
32.4
|
1.0
|
C3B
|
B:HEM147
|
4.3
|
27.7
|
1.0
|
C2B
|
B:HEM147
|
4.3
|
27.9
|
1.0
|
C3D
|
B:HEM147
|
4.3
|
30.0
|
1.0
|
C2D
|
B:HEM147
|
4.4
|
29.0
|
1.0
|
CG
|
B:HIS92
|
4.4
|
35.4
|
1.0
|
ND1
|
B:HIS92
|
4.5
|
32.8
|
1.0
|
CE1
|
B:HIS63
|
4.7
|
25.3
|
1.0
|
CG2
|
B:VAL67
|
4.8
|
26.5
|
1.0
|
|
Reference:
P.S.Kaushal,
R.Sankaranarayanan,
M.Vijayan.
Water-Mediated Variability in the Structure of Relaxed-State Haemoglobin Acta Crystallogr.,Sect.F V. 64 463 2008.
ISSN: ESSN 1744-3091
PubMed: 18540052
DOI: 10.1107/S1744309108013109
Page generated: Sun Aug 4 06:00:22 2024
|