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Iron in PDB 2zo5: Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide

Protein crystallography data

The structure of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide, PDB code: 2zo5 was solved by K.M.Polyakov, K.M.Boyko, A.Slutsky, T.V.Tikhonova, A.N.Antipov, R.A.Zvyagilskaya, A.N.Popov, V.S.Lamzin, G.P.Bourenkov, V.O.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 11.99 / 1.70
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 193.027, 193.027, 193.027, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 16.8

Other elements in 2zo5:

The structure of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide also contains other interesting chemical elements:

Calcium (Ca) 4 atoms
Sodium (Na) 2 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iron atom in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide (pdb code 2zo5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide, PDB code: 2zo5:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 16 in 2zo5

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Iron binding site 1 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1004

b:16.4
occ:1.00
FE A:HEC1004 0.0 16.4 1.0
HZ2 A:LYS188 0.9 19.5 0.0
O A:HOH1014 1.9 21.1 0.5
N1 A:AZI526 1.9 20.9 0.5
NZ A:LYS188 1.9 19.5 1.0
NA A:HEC1004 2.0 16.3 1.0
ND A:HEC1004 2.0 15.4 1.0
NC A:HEC1004 2.0 15.1 1.0
NB A:HEC1004 2.0 16.4 1.0
HZ1 A:LYS188 2.2 19.5 0.0
HZ3 A:LYS188 2.3 19.5 0.0
N2 A:AZI526 2.5 23.4 0.5
CE A:LYS188 3.0 21.6 1.0
C1D A:HEC1004 3.0 15.4 1.0
C1A A:HEC1004 3.0 16.3 1.0
C1C A:HEC1004 3.0 16.6 1.0
C4B A:HEC1004 3.0 17.2 1.0
C4D A:HEC1004 3.0 15.1 1.0
C4A A:HEC1004 3.0 17.1 1.0
C4C A:HEC1004 3.0 15.0 1.0
C1B A:HEC1004 3.0 18.5 1.0
HE3 A:LYS188 3.1 20.5 1.0
HE2 A:LYS188 3.1 20.5 1.0
CHC A:HEC1004 3.4 16.8 1.0
N3 A:AZI526 3.4 22.1 0.5
CHD A:HEC1004 3.4 15.2 1.0
CHA A:HEC1004 3.4 16.2 1.0
CHB A:HEC1004 3.4 16.7 1.0
HE2 A:HIS361 3.8 17.3 0.0
HMD1 A:HEC1006 4.0 14.7 0.0
C2A A:HEC1004 4.2 14.2 1.0
C2C A:HEC1004 4.2 15.6 1.0
C3D A:HEC1004 4.2 14.1 1.0
C3A A:HEC1004 4.3 15.7 1.0
C3B A:HEC1004 4.3 16.9 1.0
C2D A:HEC1004 4.3 14.2 1.0
C2B A:HEC1004 4.3 17.5 1.0
C3C A:HEC1004 4.3 15.3 1.0
HHC A:HEC1004 4.3 16.8 1.0
HHD A:HEC1004 4.4 15.2 1.0
HHA A:HEC1004 4.4 15.9 1.0
CD A:LYS188 4.4 18.9 1.0
O A:HOH1377 4.4 33.2 1.0
HHB A:HEC1004 4.4 17.2 1.0
NE2 A:HIS361 4.4 17.5 1.0
HD3 A:LYS188 4.5 19.2 1.0
O A:HOH1156 4.5 17.7 1.0
HH21 A:ARG131 4.5 17.6 1.0
HMD3 A:HEC1006 4.6 14.7 0.0
OH A:TYR303 4.6 25.0 1.0
O A:HOH1166 4.7 26.5 1.0
HD2 A:LYS188 4.7 19.2 1.0
HH22 A:ARG131 4.8 17.6 1.0
CMD A:HEC1006 4.8 14.7 1.0
HB2 A:CYS187 4.8 14.9 1.0
HD1 A:HIS126 4.8 15.8 0.0
NH2 A:ARG131 5.0 17.4 1.0

Iron binding site 2 out of 16 in 2zo5

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Iron binding site 2 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1005

b:14.3
occ:1.00
FE A:HEC1005 0.0 14.3 1.0
NA A:HEC1005 2.0 13.7 1.0
NE2 A:HIS398 2.0 13.6 1.0
NB A:HEC1005 2.0 13.0 1.0
NE2 A:HIS231 2.0 13.5 1.0
NC A:HEC1005 2.0 13.6 1.0
ND A:HEC1005 2.0 14.8 1.0
CE1 A:HIS231 2.9 16.0 1.0
CD2 A:HIS398 2.9 14.4 1.0
CE1 A:HIS398 3.0 17.7 1.0
C4A A:HEC1005 3.0 13.0 1.0
CD2 A:HIS231 3.0 14.5 1.0
C1C A:HEC1005 3.0 13.8 1.0
C4B A:HEC1005 3.0 11.0 1.0
C1A A:HEC1005 3.0 13.6 1.0
C1D A:HEC1005 3.0 15.1 1.0
C1B A:HEC1005 3.0 12.9 1.0
C4D A:HEC1005 3.0 14.1 1.0
C4C A:HEC1005 3.0 13.1 1.0
HD2 A:HIS398 3.1 14.2 1.0
HE1 A:HIS231 3.1 15.1 1.0
HE1 A:HIS398 3.2 16.2 1.0
HD2 A:HIS231 3.2 14.1 1.0
CHD A:HEC1005 3.3 14.5 1.0
CHC A:HEC1005 3.3 12.1 1.0
CHB A:HEC1005 3.4 11.6 1.0
CHA A:HEC1005 3.4 14.0 1.0
ND1 A:HIS231 4.1 14.7 1.0
ND1 A:HIS398 4.1 15.6 1.0
HMA1 A:HEC1003 4.1 14.1 0.0
CG A:HIS398 4.1 14.5 1.0
CG A:HIS231 4.1 13.8 1.0
C3A A:HEC1005 4.2 12.9 1.0
C2A A:HEC1005 4.2 14.3 1.0
C2B A:HEC1005 4.2 14.3 1.0
C2C A:HEC1005 4.2 13.8 1.0
C3B A:HEC1005 4.3 14.1 1.0
C3D A:HEC1005 4.3 14.0 1.0
C2D A:HEC1005 4.3 15.6 1.0
C3C A:HEC1005 4.3 12.6 1.0
HHC A:HEC1005 4.3 12.2 1.0
HHD A:HEC1005 4.3 14.3 1.0
HHA A:HEC1005 4.4 13.9 1.0
HHB A:HEC1005 4.4 12.2 1.0
HE2 A:MET384 4.4 20.4 0.0
HG2 A:GLN73 4.4 13.8 1.0
HB3 A:GLN73 4.6 14.3 1.0
HB2 A:CYS230 4.8 13.6 1.0
HD1 A:HIS231 4.8 14.8 1.0
HD1 A:HIS398 4.9 15.8 1.0

Iron binding site 3 out of 16 in 2zo5

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Iron binding site 3 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1006

b:13.8
occ:1.00
FE A:HEC1006 0.0 13.8 1.0
NE2 A:HIS119 2.0 12.1 1.0
NE2 A:HIS300 2.0 12.6 1.0
ND A:HEC1006 2.0 12.7 1.0
NB A:HEC1006 2.0 12.9 1.0
NA A:HEC1006 2.0 12.8 1.0
NC A:HEC1006 2.0 12.0 1.0
CE1 A:HIS119 2.9 13.5 1.0
CE1 A:HIS300 2.9 14.0 1.0
C4A A:HEC1006 3.0 13.7 1.0
C1A A:HEC1006 3.0 13.8 1.0
CD2 A:HIS300 3.0 15.7 1.0
C1D A:HEC1006 3.0 13.3 1.0
C1B A:HEC1006 3.0 12.7 1.0
CD2 A:HIS119 3.0 13.3 1.0
C4D A:HEC1006 3.0 14.1 1.0
C1C A:HEC1006 3.0 13.4 1.0
C4C A:HEC1006 3.0 12.0 1.0
C4B A:HEC1006 3.0 11.9 1.0
HE1 A:HIS119 3.1 13.1 1.0
HE1 A:HIS300 3.1 13.7 1.0
HD2 A:HIS300 3.2 14.3 1.0
HD2 A:HIS119 3.3 13.0 1.0
CHB A:HEC1006 3.4 14.0 1.0
CHD A:HEC1006 3.4 14.2 1.0
CHA A:HEC1006 3.4 14.1 1.0
CHC A:HEC1006 3.4 13.8 1.0
ND1 A:HIS119 4.0 13.1 1.0
HMD1 A:HEC1004 4.0 15.4 0.0
ND1 A:HIS300 4.0 14.0 1.0
CG A:HIS300 4.1 13.1 1.0
CG A:HIS119 4.1 13.2 1.0
C3A A:HEC1006 4.2 11.9 1.0
C2A A:HEC1006 4.2 12.8 1.0
C2B A:HEC1006 4.2 13.3 1.0
C2C A:HEC1006 4.3 12.2 1.0
C2D A:HEC1006 4.3 14.0 1.0
C3C A:HEC1006 4.3 11.9 1.0
C3B A:HEC1006 4.3 12.6 1.0
C3D A:HEC1006 4.3 13.9 1.0
HHB A:HEC1006 4.3 13.6 1.0
HHD A:HEC1006 4.3 13.5 1.0
HHA A:HEC1006 4.4 14.0 1.0
HHC A:HEC1006 4.4 13.3 1.0
HE2 A:MET122 4.4 13.3 0.0
HAD1 A:HEC1004 4.6 13.8 1.0
HE1 A:MET122 4.7 13.3 0.0
HD21 A:LEU225 4.7 20.3 0.0
HD1 A:HIS119 4.8 13.2 1.0
HD1 A:HIS300 4.8 13.8 1.0
HMA1 A:HEC1007 4.8 14.7 0.0
CMD A:HEC1004 5.0 15.5 1.0
HB2 A:CYS299 5.0 14.3 1.0

Iron binding site 4 out of 16 in 2zo5

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Iron binding site 4 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1007

b:14.6
occ:1.00
FE A:HEC1007 0.0 14.6 1.0
NC A:HEC1007 1.9 13.8 1.0
NE2 A:HIS491 1.9 13.0 1.0
NA A:HEC1007 1.9 12.9 1.0
NE2 A:HIS383 2.0 14.5 1.0
NB A:HEC1007 2.0 12.3 1.0
ND A:HEC1007 2.0 13.8 1.0
CE1 A:HIS491 2.9 14.5 1.0
CE1 A:HIS383 2.9 13.7 1.0
C1C A:HEC1007 3.0 12.2 1.0
C4A A:HEC1007 3.0 13.2 1.0
CD2 A:HIS383 3.0 14.9 1.0
C4D A:HEC1007 3.0 13.2 1.0
C1A A:HEC1007 3.0 12.2 1.0
C4B A:HEC1007 3.0 13.2 1.0
C1B A:HEC1007 3.0 14.6 1.0
CD2 A:HIS491 3.0 14.9 1.0
C1D A:HEC1007 3.0 13.9 1.0
C4C A:HEC1007 3.0 12.9 1.0
HE1 A:HIS491 3.1 14.1 1.0
HE1 A:HIS383 3.1 13.9 1.0
HD2 A:HIS383 3.2 14.7 1.0
HD2 A:HIS491 3.3 14.0 1.0
CHC A:HEC1007 3.3 13.1 1.0
CHB A:HEC1007 3.3 13.3 1.0
CHA A:HEC1007 3.3 13.3 1.0
CHD A:HEC1007 3.4 14.2 1.0
ND1 A:HIS491 4.0 14.3 1.0
ND1 A:HIS383 4.0 13.8 1.0
CG A:HIS383 4.1 14.4 1.0
CG A:HIS491 4.1 13.0 1.0
C3A A:HEC1007 4.2 13.2 1.0
C2B A:HEC1007 4.2 14.6 1.0
C2C A:HEC1007 4.2 13.2 1.0
C2A A:HEC1007 4.2 14.5 1.0
C3D A:HEC1007 4.2 12.6 1.0
C3C A:HEC1007 4.3 14.1 1.0
C3B A:HEC1007 4.3 13.2 1.0
C2D A:HEC1007 4.3 13.0 1.0
HHC A:HEC1007 4.3 12.9 1.0
HHA A:HEC1007 4.3 13.0 1.0
HB3 A:SER487 4.3 13.2 1.0
HHB A:HEC1007 4.3 13.6 1.0
HHD A:HEC1007 4.4 13.8 1.0
HD1 A:HIS491 4.8 14.1 1.0
HB2 A:CYS382 4.8 14.5 1.0
HD1 A:HIS383 4.8 13.9 1.0
HB2 A:SER487 4.8 13.2 1.0
HD2 A:PHE490 5.0 15.2 1.0

Iron binding site 5 out of 16 in 2zo5

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Iron binding site 5 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1008

b:17.3
occ:1.00
FE A:HEC1008 0.0 17.3 1.0
NE2 A:HIS415 1.9 17.3 1.0
NE2 A:HIS372 1.9 16.3 1.0
NB A:HEC1008 2.0 15.3 1.0
ND A:HEC1008 2.0 19.8 1.0
NC A:HEC1008 2.0 16.9 1.0
NA A:HEC1008 2.0 17.3 1.0
CE1 A:HIS415 2.9 19.9 1.0
CD2 A:HIS372 2.9 15.9 1.0
CE1 A:HIS372 2.9 17.7 1.0
C1D A:HEC1008 3.0 21.2 1.0
C1B A:HEC1008 3.0 16.9 1.0
CD2 A:HIS415 3.0 16.9 1.0
C4B A:HEC1008 3.0 16.7 1.0
C1C A:HEC1008 3.0 19.0 1.0
C4D A:HEC1008 3.0 19.6 1.0
C4A A:HEC1008 3.0 16.1 1.0
HE1 A:HIS415 3.0 19.7 1.0
C1A A:HEC1008 3.0 18.4 1.0
C4C A:HEC1008 3.1 19.5 1.0
HD2 A:HIS372 3.1 15.9 1.0
HE1 A:HIS372 3.1 17.5 1.0
HD2 A:HIS415 3.2 17.1 1.0
CHC A:HEC1008 3.4 18.1 1.0
CHB A:HEC1008 3.4 17.2 1.0
CHD A:HEC1008 3.4 20.3 1.0
CHA A:HEC1008 3.4 20.4 1.0
ND1 A:HIS415 4.0 21.5 1.0
ND1 A:HIS372 4.0 18.3 1.0
CG A:HIS372 4.1 15.7 1.0
CG A:HIS415 4.1 17.3 1.0
C2B A:HEC1008 4.2 18.0 1.0
C3B A:HEC1008 4.2 16.4 1.0
C2D A:HEC1008 4.2 22.8 1.0
C3D A:HEC1008 4.2 23.2 1.0
C2C A:HEC1008 4.3 16.9 1.0
C2A A:HEC1008 4.3 18.9 1.0
C3A A:HEC1008 4.3 19.3 1.0
HBC3 A:HEC1007 4.3 15.1 0.0
C3C A:HEC1008 4.3 19.3 1.0
HHC A:HEC1008 4.3 18.0 1.0
HHB A:HEC1008 4.3 16.9 1.0
HHD A:HEC1008 4.3 20.3 1.0
HHA A:HEC1008 4.4 19.7 1.0
HZ3 A:TRP418 4.7 17.6 1.0
HBC2 A:HEC1007 4.7 15.1 0.0
HD1 A:HIS415 4.8 20.2 1.0
HD1 A:HIS372 4.8 17.5 1.0
HZ A:PHE490 4.9 14.6 1.0

Iron binding site 6 out of 16 in 2zo5

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Iron binding site 6 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1002

b:15.6
occ:1.00
FE A:HEC1002 0.0 15.6 1.0
NE2 A:HIS234 1.9 14.6 1.0
NE2 A:HIS39 1.9 14.8 1.0
NB A:HEC1002 2.0 13.9 1.0
NA A:HEC1002 2.0 15.8 1.0
NC A:HEC1002 2.0 14.2 1.0
ND A:HEC1002 2.0 14.9 1.0
CE1 A:HIS39 2.9 14.7 1.0
CD2 A:HIS234 2.9 14.4 1.0
CE1 A:HIS234 2.9 13.8 1.0
C4A A:HEC1002 3.0 17.1 1.0
CD2 A:HIS39 3.0 13.5 1.0
C1D A:HEC1002 3.0 15.4 1.0
C1B A:HEC1002 3.0 16.2 1.0
C1C A:HEC1002 3.0 15.7 1.0
C4B A:HEC1002 3.0 15.1 1.0
C4C A:HEC1002 3.0 15.8 1.0
HE1 A:HIS39 3.0 15.1 1.0
C1A A:HEC1002 3.1 14.6 1.0
C4D A:HEC1002 3.1 13.5 1.0
HD2 A:HIS234 3.1 14.5 1.0
HE1 A:HIS234 3.1 14.2 1.0
HD2 A:HIS39 3.2 14.0 1.0
CHB A:HEC1002 3.4 17.1 1.0
CHC A:HEC1002 3.4 16.3 1.0
CHD A:HEC1002 3.4 14.8 1.0
CHA A:HEC1002 3.5 15.2 1.0
ND1 A:HIS39 4.0 16.1 1.0
ND1 A:HIS234 4.0 14.8 1.0
CG A:HIS234 4.1 14.6 1.0
CG A:HIS39 4.1 14.4 1.0
HMA1 A:HEC1001 4.1 17.3 0.0
C3A A:HEC1002 4.2 16.0 1.0
C2B A:HEC1002 4.3 15.4 1.0
C2C A:HEC1002 4.3 16.9 1.0
C2A A:HEC1002 4.3 14.3 1.0
C2D A:HEC1002 4.3 14.8 1.0
C3C A:HEC1002 4.3 15.5 1.0
C3B A:HEC1002 4.3 15.9 1.0
C3D A:HEC1002 4.3 13.4 1.0
HHB A:HEC1002 4.3 16.9 1.0
HHC A:HEC1002 4.4 15.9 1.0
HHD A:HEC1002 4.4 15.2 1.0
HHA A:HEC1002 4.5 14.7 1.0
HG2 A:PRO233 4.5 14.4 1.0
HB2 A:CYS38 4.6 14.9 1.0
HG22 A:ILE21 4.6 17.3 0.0
HB2 A:PRO233 4.7 14.1 1.0
HG23 A:THR59 4.8 16.4 0.0
HD1 A:HIS39 4.8 15.3 1.0
HD1 A:HIS234 4.8 14.5 1.0
HG13 A:ILE21 4.9 18.9 1.0

Iron binding site 7 out of 16 in 2zo5

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Iron binding site 7 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1003

b:14.8
occ:1.00
FE A:HEC1003 0.0 14.8 1.0
HE2 A:HIS70 1.2 13.6 0.0
NA A:HEC1003 2.0 14.1 1.0
NE2 A:HIS70 2.0 13.5 1.0
NC A:HEC1003 2.0 14.8 1.0
NE2 A:HIS30 2.0 14.0 1.0
NB A:HEC1003 2.0 13.5 1.0
ND A:HEC1003 2.0 14.9 1.0
CE1 A:HIS30 2.9 16.2 1.0
CD2 A:HIS70 3.0 15.7 1.0
CE1 A:HIS70 3.0 16.4 1.0
C4A A:HEC1003 3.0 14.3 1.0
C1B A:HEC1003 3.0 13.9 1.0
C1D A:HEC1003 3.0 13.9 1.0
C1C A:HEC1003 3.0 13.9 1.0
C4B A:HEC1003 3.0 12.8 1.0
CD2 A:HIS30 3.0 15.6 1.0
C1A A:HEC1003 3.0 14.3 1.0
C4C A:HEC1003 3.0 15.1 1.0
C4D A:HEC1003 3.1 14.3 1.0
HE1 A:HIS30 3.1 15.1 1.0
HD2 A:HIS70 3.2 14.7 1.0
HE1 A:HIS70 3.2 15.1 1.0
HD2 A:HIS30 3.2 15.1 1.0
CHB A:HEC1003 3.4 13.3 1.0
CHC A:HEC1003 3.4 12.5 1.0
CHD A:HEC1003 3.4 14.5 1.0
CHA A:HEC1003 3.4 14.4 1.0
ND1 A:HIS30 4.1 13.8 1.0
ND1 A:HIS70 4.1 13.8 1.0
CG A:HIS70 4.1 13.4 1.0
CG A:HIS30 4.2 15.0 1.0
HMA1 A:HEC1005 4.2 12.7 0.0
C2B A:HEC1003 4.2 14.5 1.0
C3A A:HEC1003 4.2 14.7 1.0
C2A A:HEC1003 4.3 15.3 1.0
C2D A:HEC1003 4.3 15.7 1.0
C3B A:HEC1003 4.3 13.2 1.0
C2C A:HEC1003 4.3 14.8 1.0
C3C A:HEC1003 4.3 13.5 1.0
C3D A:HEC1003 4.3 15.1 1.0
HHB A:HEC1003 4.3 13.7 1.0
HHD A:HEC1003 4.3 14.5 1.0
HG22 A:VAL33 4.4 16.4 0.0
HHC A:HEC1003 4.4 12.9 1.0
HHA A:HEC1003 4.4 14.4 1.0
HB1 A:ALA236 4.6 16.1 0.0
HB2 A:CYS69 4.7 16.4 1.0
HB2 A:ALA236 4.8 16.1 0.0
HD1 A:HIS30 4.9 14.7 1.0
HD1 A:HIS70 4.9 13.6 0.0

Iron binding site 8 out of 16 in 2zo5

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Iron binding site 8 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1001

b:16.5
occ:1.00
FE A:HEC1001 0.0 16.5 1.0
HE2 A:HIS44 1.1 15.6 1.0
NE2 A:HIS18 1.9 14.6 1.0
NE2 A:HIS44 2.0 16.0 1.0
ND A:HEC1001 2.0 15.8 1.0
NA A:HEC1001 2.0 14.6 1.0
NC A:HEC1001 2.0 17.4 1.0
NB A:HEC1001 2.0 15.4 1.0
CE1 A:HIS18 2.8 14.4 1.0
CE1 A:HIS44 3.0 15.2 1.0
CD2 A:HIS44 3.0 15.2 1.0
HE1 A:HIS18 3.0 14.8 1.0
CD2 A:HIS18 3.0 15.7 1.0
C1A A:HEC1001 3.0 16.2 1.0
C1D A:HEC1001 3.0 17.7 1.0
C1C A:HEC1001 3.0 18.9 1.0
C4A A:HEC1001 3.0 17.8 1.0
C4D A:HEC1001 3.0 15.6 1.0
C4B A:HEC1001 3.0 16.0 1.0
C4C A:HEC1001 3.1 18.6 1.0
C1B A:HEC1001 3.1 16.9 1.0
HE1 A:HIS44 3.2 15.8 1.0
HD2 A:HIS44 3.2 15.6 1.0
HD2 A:HIS18 3.3 15.7 1.0
CHA A:HEC1001 3.4 17.3 1.0
CHC A:HEC1001 3.4 18.4 1.0
CHD A:HEC1001 3.4 17.6 1.0
CHB A:HEC1001 3.4 17.8 1.0
ND1 A:HIS18 4.0 15.7 1.0
HG3 A:PRO57 4.1 17.7 1.0
ND1 A:HIS44 4.1 17.2 1.0
CG A:HIS18 4.1 16.5 1.0
CG A:HIS44 4.1 16.2 1.0
HMA1 A:HEC1002 4.2 17.1 0.0
C3A A:HEC1001 4.2 16.2 1.0
C2A A:HEC1001 4.2 15.7 1.0
C2D A:HEC1001 4.3 17.5 1.0
C2C A:HEC1001 4.3 17.0 1.0
C3D A:HEC1001 4.3 16.9 1.0
C2B A:HEC1001 4.3 17.8 1.0
C3C A:HEC1001 4.3 18.4 1.0
C3B A:HEC1001 4.3 17.7 1.0
HHA A:HEC1001 4.4 16.6 1.0
HHC A:HEC1001 4.4 17.9 1.0
HHD A:HEC1001 4.4 17.9 1.0
HHB A:HEC1001 4.4 17.6 1.0
HD1 A:HIS18 4.7 15.6 1.0
HB2 A:CYS17 4.8 20.8 1.0
HD1 A:HIS44 4.8 17.9 0.0

Iron binding site 9 out of 16 in 2zo5

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Iron binding site 9 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1004

b:14.5
occ:1.00
FE B:HEC1004 0.0 14.5 1.0
HZ2 B:LYS188 1.1 17.7 0.0
N1 B:AZI526 1.9 18.7 0.5
NZ B:LYS188 1.9 17.6 1.0
NA B:HEC1004 2.0 14.5 1.0
ND B:HEC1004 2.0 13.5 1.0
NC B:HEC1004 2.0 13.5 1.0
NB B:HEC1004 2.0 15.0 1.0
O B:HOH1039 2.1 13.7 0.5
HZ1 B:LYS188 2.3 17.7 0.0
HZ3 B:LYS188 2.3 17.7 0.0
N2 B:AZI526 2.4 21.7 0.5
C1A B:HEC1004 3.0 14.8 1.0
CE B:LYS188 3.0 21.9 1.0
C1D B:HEC1004 3.0 12.7 1.0
C4D B:HEC1004 3.0 14.2 1.0
C1C B:HEC1004 3.0 12.7 1.0
C4B B:HEC1004 3.0 15.2 1.0
C4A B:HEC1004 3.0 14.9 1.0
C4C B:HEC1004 3.0 13.1 1.0
C1B B:HEC1004 3.1 16.0 1.0
HE3 B:LYS188 3.1 19.9 1.0
HE2 B:LYS188 3.2 19.9 1.0
CHA B:HEC1004 3.3 12.7 1.0
CHC B:HEC1004 3.3 15.1 1.0
CHD B:HEC1004 3.4 12.9 1.0
N3 B:AZI526 3.4 18.9 0.5
CHB B:HEC1004 3.4 15.2 1.0
HE2 B:HIS361 3.5 15.2 0.0
HMD1 B:HEC1006 4.0 13.3 0.0
C3D B:HEC1004 4.2 12.2 1.0
C2A B:HEC1004 4.2 14.9 1.0
C3A B:HEC1004 4.2 15.3 1.0
C2C B:HEC1004 4.2 13.4 1.0
C2D B:HEC1004 4.3 12.3 1.0
C3B B:HEC1004 4.3 15.8 1.0
C2B B:HEC1004 4.3 15.7 1.0
C3C B:HEC1004 4.3 13.5 1.0
HHA B:HEC1004 4.3 13.6 1.0
HHC B:HEC1004 4.3 14.6 1.0
O B:HOH1437 4.3 31.1 1.0
HHD B:HEC1004 4.4 12.9 1.0
NE2 B:HIS361 4.4 15.1 1.0
CD B:LYS188 4.4 17.8 1.0
HHB B:HEC1004 4.4 15.3 1.0
HD3 B:LYS188 4.4 18.3 1.0
HH21 B:ARG131 4.5 15.4 1.0
O B:HOH1217 4.5 17.4 1.0
OH B:TYR303 4.7 22.0 1.0
HMD3 B:HEC1006 4.8 13.3 0.0
HH22 B:ARG131 4.8 15.4 1.0
O B:HOH1227 4.8 23.9 1.0
HB2 B:CYS187 4.8 13.9 1.0
CMD B:HEC1006 4.8 13.5 1.0
HD2 B:LYS188 4.8 18.3 1.0
HH B:TYR303 4.9 22.1 0.0
HD1 B:HIS126 5.0 14.6 0.0

Iron binding site 10 out of 16 in 2zo5

Go back to Iron Binding Sites List in 2zo5
Iron binding site 10 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase in A Complex with Azide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1005

b:13.8
occ:1.00
FE B:HEC1005 0.0 13.8 1.0
ND B:HEC1005 1.9 14.1 1.0
NE2 B:HIS398 2.0 12.8 1.0
NE2 B:HIS231 2.0 12.2 1.0
NA B:HEC1005 2.0 12.1 1.0
NC B:HEC1005 2.0 13.3 1.0
NB B:HEC1005 2.0 12.8 1.0
CE1 B:HIS231 2.9 15.1 1.0
CE1 B:HIS398 2.9 14.6 1.0
CD2 B:HIS398 3.0 12.6 1.0
C1D B:HEC1005 3.0 13.4 1.0
C4D B:HEC1005 3.0 12.7 1.0
C4A B:HEC1005 3.0 13.5 1.0
C4C B:HEC1005 3.0 11.9 1.0
C1C B:HEC1005 3.0 12.9 1.0
CD2 B:HIS231 3.0 13.4 1.0
C1A B:HEC1005 3.0 12.9 1.0
C1B B:HEC1005 3.0 11.9 1.0
C4B B:HEC1005 3.0 11.0 1.0
HE1 B:HIS231 3.1 14.0 1.0
HD2 B:HIS398 3.1 12.6 1.0
HE1 B:HIS398 3.1 14.2 1.0
HD2 B:HIS231 3.3 12.9 1.0
CHD B:HEC1005 3.3 13.1 1.0
CHC B:HEC1005 3.4 11.8 1.0
CHB B:HEC1005 3.4 13.3 1.0
CHA B:HEC1005 3.4 14.1 1.0
ND1 B:HIS231 4.0 13.4 1.0
ND1 B:HIS398 4.1 14.5 1.0
CG B:HIS398 4.1 12.3 1.0
HMA1 B:HEC1003 4.1 14.2 0.0
CG B:HIS231 4.1 12.5 1.0
C2D B:HEC1005 4.2 14.2 1.0
C3D B:HEC1005 4.2 14.2 1.0
C3A B:HEC1005 4.2 13.4 1.0
HE2 B:MET384 4.3 17.4 0.0
C2C B:HEC1005 4.3 13.7 1.0
C2A B:HEC1005 4.3 13.0 1.0
C2B B:HEC1005 4.3 12.9 1.0
C3C B:HEC1005 4.3 11.9 1.0
C3B B:HEC1005 4.3 12.4 1.0
HHD B:HEC1005 4.3 12.9 1.0
HHC B:HEC1005 4.3 11.9 1.0
HHB B:HEC1005 4.4 13.0 1.0
HHA B:HEC1005 4.4 13.5 1.0
HG2 B:GLN73 4.5 14.5 1.0
HB3 B:GLN73 4.7 14.6 1.0
HB2 B:CYS230 4.7 13.3 1.0
HD1 B:HIS231 4.8 13.6 1.0
HD1 B:HIS398 4.8 14.0 1.0

Reference:

K.M.Polyakov, K.M.Boyko, T.V.Tikhonova, A.Slutsky, A.N.Antipov, R.A.Zvyagilskaya, A.N.Popov, G.P.Bourenkov, V.S.Lamzin, V.O.Popov. High-Resolution Structural Analysis of A Novel Octaheme Cytochrome C Nitrite Reductase From the Haloalkaliphilic Bacterium Thioalkalivibrio Nitratireducens J.Mol.Biol. V. 389 846 2009.
ISSN: ISSN 0022-2836
PubMed: 19393666
DOI: 10.1016/J.JMB.2009.04.037
Page generated: Sun Dec 13 14:59:04 2020

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