Atomistry » Iron » PDB 2z5z-2zpg » 2zpf
Atomistry »
  Iron »
    PDB 2z5z-2zpg »
      2zpf »

Iron in PDB 2zpf: Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 18MIN at 293K

Enzymatic activity of Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 18MIN at 293K

All present enzymatic activity of Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 18MIN at 293K:
4.2.1.84;

Protein crystallography data

The structure of Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 18MIN at 293K, PDB code: 2zpf was solved by K.Hashimoto, H.Suzuki, K.Taniguchi, T.Noguchi, M.Yohda, M.Odaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.48
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.045, 59.995, 81.710, 90.00, 125.06, 90.00
R / Rfree (%) 16.8 / 19

Other elements in 2zpf:

The structure of Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 18MIN at 293K also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 18MIN at 293K (pdb code 2zpf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 18MIN at 293K, PDB code: 2zpf:

Iron binding site 1 out of 1 in 2zpf

Go back to Iron Binding Sites List in 2zpf
Iron binding site 1 out of 1 in the Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 18MIN at 293K


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Complex of Fe-Type Nitrile Hydratase with Tert- Butylisonitrile, Photo-Activated For 18MIN at 293K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe300

b:7.9
occ:1.00
 N A:CSO114 2.0 8.1 1.0
N A:SER113 2.0 8.0 1.0
N A:NO301 2.0 12.1 0.8
SG A:CSD112 2.2 7.3 1.0
SG A:CSO114 2.2 11.2 1.0
SG A:CYS109 2.4 7.9 1.0
C A:SER113 2.9 8.2 1.0
CA A:CSO114 3.0 8.6 1.0
CA A:SER113 3.0 7.8 1.0
O A:NO301 3.0 16.5 0.8
OD1 A:CSD112 3.1 8.2 1.0
CB A:CSO114 3.1 9.1 1.0
C A:CSD112 3.1 6.9 1.0
OD A:CSO114 3.1 15.9 1.0
OD2 A:CSD112 3.2 7.2 1.0
CB A:CSD112 3.2 7.7 1.0
CB A:CYS109 3.4 7.9 1.0
CA A:CSD112 3.5 6.7 1.0
OG A:SER113 3.8 10.1 1.0
N A:CSD112 3.8 7.3 1.0
CB A:SER113 4.0 8.1 1.0
O A:SER113 4.1 8.4 1.0
O A:CSD112 4.2 6.7 1.0
C A:CSO114 4.3 8.7 1.0
O A:CSO114 4.7 7.9 1.0
NH2 B:ARG141 4.8 9.2 1.0
CA A:CYS109 4.8 7.3 1.0
O A:HOH1650 4.8 15.6 1.0
O A:CYS109 5.0 7.9 1.0
C A:LEU111 5.0 7.6 1.0
O A:THR162 5.0 11.1 1.0

Reference:

K.Hashimoto, H.Suzuki, K.Taniguchi, T.Noguchi, M.Yohda, M.Odaka. Catalytic Mechanism of Nitrile Hydratase Proposed By Time-Resolved X-Ray Crystallography Using A Novel Substrate, Tert-Butylisonitrile J.Biol.Chem. V. 283 36617 2008.
ISSN: ISSN 0021-9258
PubMed: 18948265
DOI: 10.1074/JBC.M806577200
Page generated: Sun Aug 4 06:04:04 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy