Iron in PDB 3afv: Dye-Decolorizing Peroxidase (Dyp) at 1.4 A Resolution

All present enzymatic activity of Dye-Decolorizing Peroxidase (Dyp) at 1.4 A Resolution:
1.11.1.19;

The structure of Dye-Decolorizing Peroxidase (Dyp) at 1.4 A Resolution, PDB code: 3afv was solved by Y.Sugano, T.Yoshida, H.Tsuge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.85 / 1.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.789, 95.968, 50.303, 90.00, 103.84, 90.00
R / Rfree (%)	17.8 / 19.7

The binding sites of Iron atom in the Dye-Decolorizing Peroxidase (Dyp) at 1.4 A Resolution (pdb code 3afv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Dye-Decolorizing Peroxidase (Dyp) at 1.4 A Resolution, PDB code: 3afv:

Iron binding site 1 out of 1 in the Dye-Decolorizing Peroxidase (Dyp) at 1.4 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Dye-Decolorizing Peroxidase (Dyp) at 1.4 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:5.1 occ:1.00 FE A:HEM501 0.0 5.1 1.0 NB A:HEM501 2.0 4.7 1.0 NC A:HEM501 2.1 4.8 1.0 NA A:HEM501 2.1 4.7 1.0 ND A:HEM501 2.1 4.4 1.0 O A:HOH1228 2.1 20.3 1.0 NE2 A:HIS308 2.2 4.8 1.0 C1A A:HEM501 3.1 4.2 1.0 C4A A:HEM501 3.1 5.8 1.0 C4D A:HEM501 3.1 4.9 1.0 C1C A:HEM501 3.1 4.4 1.0 C4C A:HEM501 3.1 5.0 1.0 C1B A:HEM501 3.1 5.1 1.0 C4B A:HEM501 3.1 3.4 1.0 C1D A:HEM501 3.1 4.9 1.0 CE1 A:HIS308 3.1 3.8 1.0 CD2 A:HIS308 3.2 4.6 1.0 CHA A:HEM501 3.4 5.2 1.0 CHB A:HEM501 3.4 6.1 1.0 CHC A:HEM501 3.4 4.7 1.0 CHD A:HEM501 3.5 4.7 1.0 ND1 A:HIS308 4.2 5.8 1.0 NH1 A:ARG329 4.3 7.0 1.0 C3A A:HEM501 4.3 4.2 1.0 C2A A:HEM501 4.3 4.6 1.0 C2C A:HEM501 4.3 4.4 1.0 C3C A:HEM501 4.3 4.8 1.0 CG A:HIS308 4.3 4.2 1.0 C3D A:HEM501 4.3 5.9 1.0 C2B A:HEM501 4.3 5.6 1.0 C3B A:HEM501 4.3 4.8 1.0 C2D A:HEM501 4.3 5.9 1.0 O A:HOH1227 4.5 6.8 1.0 CD A:ARG329 4.9 6.2 1.0 CE1 A:PHE356 4.9 7.0 1.0

T.Yoshida, H.Tsuge, H.Konno, T.Hisabori, Y.Sugano. The Catalytic Mechanism of Dye-Decolorizing Peroxidase Dyp May Require the Swinging Movement of An Aspartic Acid Residue Febs J. V. 278 2387 2011.
ISSN: ISSN 1742-464X
PubMed: 21569205
DOI: 10.1111/J.1742-4658.2011.08161.X