Iron binding site 1 out of 8 in 3bk9
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Iron in the PDB 3bk9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Gly125, A: His240, A: Val244, A: Trp402, A: Hem401, A: Hoh552, |
conact list:
Atom | Atom | Distance (A) | Fe | N A:Gly125 | 4.88 | Fe | NE2 A:His240 | 2.30 | Fe | ND1 A:His240 | 4.30 | Fe | CD2 A:His240 | 3.30 | Fe | CE1 A:His240 | 3.18 | Fe | CG A:His240 | 4.39 | Fe | CG2 A:Val244 | 4.94 | Fe | N A:Trp402 | 4.61 | Fe | CD1 A:Trp402 | 4.56 | Fe | CA A:Trp402 | 4.77 | Fe | C2D A:Hem401 | 4.28 | Fe | NC A:Hem401 | 2.08 | Fe | CHB A:Hem401 | 3.42 | Fe | CHC A:Hem401 | 3.34 | Fe | C3D A:Hem401 | 4.23 | Fe | NA A:Hem401 | 2.15 | Fe | CHA A:Hem401 | 3.43 | Fe | C2A A:Hem401 | 4.34 | Fe | C1D A:Hem401 | 3.08 | Fe | C4A A:Hem401 | 3.14 | Fe | C4B A:Hem401 | 2.95 | Fe | C3A A:Hem401 | 4.38 | Fe | C4C A:Hem401 | 3.15 | Fe | C2B A:Hem401 | 4.20 | Fe | C1C A:Hem401 | 3.07 | Fe | C2C A:Hem401 | 4.33 | Fe | ND A:Hem401 | 1.98 | Fe | CHD A:Hem401 | 3.52 | Fe | C1B A:Hem401 | 3.00 | Fe | NB A:Hem401 | 1.90 | Fe | FE A:Hem401 | 0.00 | Fe | C3C A:Hem401 | 4.36 | Fe | C3B A:Hem401 | 4.16 | Fe | C4D A:Hem401 | 2.99 | Fe | C1A A:Hem401 | 3.13 | Fe | O A:Hoh552 | 2.78 |
| interactive model:
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Iron binding site 2 out of 8 in 3bk9
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Iron in the PDB 3bk9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Gly125, B: His240, B: Val244, B: Trp402, B: Hem401, B: Hoh1541, |
conact list:
Atom | Atom | Distance (A) | Fe | N B:Gly125 | 4.79 | Fe | NE2 B:His240 | 2.21 | Fe | ND1 B:His240 | 4.26 | Fe | CD2 B:His240 | 3.20 | Fe | CE1 B:His240 | 3.14 | Fe | CG B:His240 | 4.32 | Fe | CG2 B:Val244 | 4.81 | Fe | N B:Trp402 | 4.79 | Fe | CD1 B:Trp402 | 4.58 | Fe | NE1 B:Trp402 | 4.88 | Fe | C2D B:Hem401 | 4.23 | Fe | NC B:Hem401 | 2.08 | Fe | CHB B:Hem401 | 3.34 | Fe | CHC B:Hem401 | 3.44 | Fe | C3D B:Hem401 | 4.20 | Fe | NA B:Hem401 | 2.08 | Fe | CHA B:Hem401 | 3.41 | Fe | C2A B:Hem401 | 4.28 | Fe | C1D B:Hem401 | 3.07 | Fe | C4A B:Hem401 | 3.06 | Fe | C4B B:Hem401 | 2.94 | Fe | C3A B:Hem401 | 4.28 | Fe | C4C B:Hem401 | 3.12 | Fe | C2B B:Hem401 | 4.11 | Fe | C1C B:Hem401 | 3.05 | Fe | C2C B:Hem401 | 4.24 | Fe | ND B:Hem401 | 1.99 | Fe | CHD B:Hem401 | 3.49 | Fe | C1B B:Hem401 | 2.95 | Fe | NB B:Hem401 | 1.88 | Fe | FE B:Hem401 | 0.00 | Fe | C3C B:Hem401 | 4.28 | Fe | C3B B:Hem401 | 4.08 | Fe | C4D B:Hem401 | 3.00 | Fe | C1A B:Hem401 | 3.09 | Fe | O B:Hoh1541 | 2.59 |
| interactive model:
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Iron binding site 3 out of 8 in 3bk9
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Iron in the PDB 3bk9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Gly125, C: His240, C: Val244, C: Trp402, C: Hem401, C: Hoh632, |
conact list:
Atom | Atom | Distance (A) | Fe | N C:Gly125 | 4.86 | Fe | NE2 C:His240 | 2.29 | Fe | ND1 C:His240 | 4.28 | Fe | CD2 C:His240 | 3.27 | Fe | CE1 C:His240 | 3.17 | Fe | CG C:His240 | 4.36 | Fe | CG2 C:Val244 | 4.83 | Fe | N C:Trp402 | 4.74 | Fe | CD1 C:Trp402 | 4.49 | Fe | CA C:Trp402 | 5.00 | Fe | NE1 C:Trp402 | 4.87 | Fe | C2D C:Hem401 | 4.18 | Fe | NC C:Hem401 | 2.12 | Fe | CHB C:Hem401 | 3.30 | Fe | CHC C:Hem401 | 3.48 | Fe | C3D C:Hem401 | 4.18 | Fe | NA C:Hem401 | 2.07 | Fe | CHA C:Hem401 | 3.45 | Fe | C2A C:Hem401 | 4.40 | Fe | C1D C:Hem401 | 2.97 | Fe | C4A C:Hem401 | 3.01 | Fe | C4B C:Hem401 | 2.95 | Fe | C3A C:Hem401 | 4.31 | Fe | C4C C:Hem401 | 3.10 | Fe | C2B C:Hem401 | 4.17 | Fe | C1C C:Hem401 | 3.15 | Fe | C2C C:Hem401 | 4.35 | Fe | ND C:Hem401 | 1.89 | Fe | CHD C:Hem401 | 3.38 | Fe | C1B C:Hem401 | 2.91 | Fe | NB C:Hem401 | 1.86 | Fe | FE C:Hem401 | 0.00 | Fe | C3C C:Hem401 | 4.34 | Fe | C3B C:Hem401 | 4.12 | Fe | C4D C:Hem401 | 2.95 | Fe | C1A C:Hem401 | 3.16 | Fe | O C:Hoh632 | 2.88 |
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Iron binding site 4 out of 8 in 3bk9
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Iron in the PDB 3bk9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: Gly125, D: His240, D: Val244, D: Trp402, D: Hem401, D: Hoh621, |
conact list:
Atom | Atom | Distance (A) | Fe | N D:Gly125 | 4.74 | Fe | CA D:Gly125 | 4.83 | Fe | NE2 D:His240 | 2.38 | Fe | ND1 D:His240 | 4.40 | Fe | CD2 D:His240 | 3.35 | Fe | CE1 D:His240 | 3.28 | Fe | CG D:His240 | 4.46 | Fe | CG2 D:Val244 | 4.72 | Fe | N D:Trp402 | 4.42 | Fe | CD1 D:Trp402 | 4.42 | Fe | CA D:Trp402 | 4.99 | Fe | NE1 D:Trp402 | 4.68 | Fe | C2D D:Hem401 | 4.17 | Fe | NC D:Hem401 | 2.09 | Fe | CHB D:Hem401 | 3.49 | Fe | CHC D:Hem401 | 3.22 | Fe | C3D D:Hem401 | 4.13 | Fe | NA D:Hem401 | 2.03 | Fe | CHA D:Hem401 | 3.27 | Fe | C2A D:Hem401 | 4.24 | Fe | C1D D:Hem401 | 2.99 | Fe | C4A D:Hem401 | 3.12 | Fe | C4B D:Hem401 | 2.85 | Fe | C3A D:Hem401 | 4.29 | Fe | C4C D:Hem401 | 3.18 | Fe | C2B D:Hem401 | 4.26 | Fe | C1C D:Hem401 | 3.02 | Fe | C2C D:Hem401 | 4.30 | Fe | ND D:Hem401 | 1.85 | Fe | CHD D:Hem401 | 3.50 | Fe | C1B D:Hem401 | 3.05 | Fe | NB D:Hem401 | 1.86 | Fe | FE D:Hem401 | 0.00 | Fe | C3C D:Hem401 | 4.36 | Fe | C3B D:Hem401 | 4.13 | Fe | C4D D:Hem401 | 2.87 | Fe | C1A D:Hem401 | 2.97 | Fe | O D:Hoh621 | 2.68 |
| interactive model:
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Iron binding site 5 out of 8 in 3bk9
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Iron in the PDB 3bk9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: E: Gly125, E: His240, E: Val244, E: Trp402, E: Hem401, E: Hoh642, |
conact list:
Atom | Atom | Distance (A) | Fe | N E:Gly125 | 4.84 | Fe | CA E:Gly125 | 4.80 | Fe | NE2 E:His240 | 2.31 | Fe | ND1 E:His240 | 4.37 | Fe | CD2 E:His240 | 3.34 | Fe | CE1 E:His240 | 3.24 | Fe | CG E:His240 | 4.45 | Fe | CG2 E:Val244 | 4.84 | Fe | N E:Trp402 | 4.69 | Fe | CD1 E:Trp402 | 4.59 | Fe | CA E:Trp402 | 4.99 | Fe | C2D E:Hem401 | 4.46 | Fe | NC E:Hem401 | 2.08 | Fe | CHB E:Hem401 | 3.42 | Fe | CHC E:Hem401 | 3.51 | Fe | C3D E:Hem401 | 4.48 | Fe | NA E:Hem401 | 2.11 | Fe | CHA E:Hem401 | 3.54 | Fe | C2A E:Hem401 | 4.38 | Fe | C1D E:Hem401 | 3.21 | Fe | C4A E:Hem401 | 3.11 | Fe | C4B E:Hem401 | 3.14 | Fe | C3A E:Hem401 | 4.36 | Fe | C4C E:Hem401 | 3.07 | Fe | C2B E:Hem401 | 4.32 | Fe | C1C E:Hem401 | 3.13 | Fe | C2C E:Hem401 | 4.32 | Fe | ND E:Hem401 | 2.26 | Fe | CHD E:Hem401 | 3.44 | Fe | C1B E:Hem401 | 3.09 | Fe | NB E:Hem401 | 2.13 | Fe | FE E:Hem401 | 0.00 | Fe | C3C E:Hem401 | 4.29 | Fe | C3B E:Hem401 | 4.35 | Fe | C4D E:Hem401 | 3.24 | Fe | C1A E:Hem401 | 3.16 | Fe | O E:Hoh642 | 2.59 |
| interactive model:
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Iron binding site 6 out of 8 in 3bk9
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Iron in the PDB 3bk9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: F: Gly125, F: His240, F: Val244, F: Trp402, F: Hem401, F: Hoh662, |
conact list:
Atom | Atom | Distance (A) | Fe | N F:Gly125 | 4.82 | Fe | CA F:Gly125 | 4.94 | Fe | NE2 F:His240 | 2.24 | Fe | ND1 F:His240 | 4.28 | Fe | CD2 F:His240 | 3.26 | Fe | CE1 F:His240 | 3.14 | Fe | CG F:His240 | 4.37 | Fe | CG2 F:Val244 | 4.82 | Fe | N F:Trp402 | 4.69 | Fe | CD1 F:Trp402 | 4.47 | Fe | CA F:Trp402 | 4.95 | Fe | NE1 F:Trp402 | 4.72 | Fe | C2D F:Hem401 | 4.49 | Fe | NC F:Hem401 | 2.08 | Fe | CHB F:Hem401 | 3.49 | Fe | CHC F:Hem401 | 3.45 | Fe | C3D F:Hem401 | 4.46 | Fe | NA F:Hem401 | 1.95 | Fe | CHA F:Hem401 | 3.43 | Fe | C2A F:Hem401 | 4.21 | Fe | C1D F:Hem401 | 3.26 | Fe | C4A F:Hem401 | 3.03 | Fe | C4B F:Hem401 | 3.16 | Fe | C3A F:Hem401 | 4.24 | Fe | C4C F:Hem401 | 3.12 | Fe | C2B F:Hem401 | 4.43 | Fe | C1C F:Hem401 | 3.10 | Fe | C2C F:Hem401 | 4.35 | Fe | ND F:Hem401 | 2.27 | Fe | CHD F:Hem401 | 3.55 | Fe | C1B F:Hem401 | 3.20 | Fe | NB F:Hem401 | 2.20 | Fe | FE F:Hem401 | 0.00 | Fe | C3C F:Hem401 | 4.35 | Fe | C3B F:Hem401 | 4.42 | Fe | C4D F:Hem401 | 3.21 | Fe | C1A F:Hem401 | 2.99 | Fe | O F:Hoh662 | 2.91 |
| interactive model:
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Iron binding site 7 out of 8 in 3bk9
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Iron in the PDB 3bk9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: G: Gly125, G: His240, G: Val244, G: Trp402, G: Hem401, G: Hoh663, |
conact list:
Atom | Atom | Distance (A) | Fe | N G:Gly125 | 4.71 | Fe | CA G:Gly125 | 4.77 | Fe | NE2 G:His240 | 2.36 | Fe | ND1 G:His240 | 4.39 | Fe | CD2 G:His240 | 3.39 | Fe | CE1 G:His240 | 3.24 | Fe | CG G:His240 | 4.49 | Fe | CG2 G:Val244 | 4.71 | Fe | N G:Trp402 | 4.66 | Fe | CD1 G:Trp402 | 4.51 | Fe | CA G:Trp402 | 4.94 | Fe | NE1 G:Trp402 | 4.94 | Fe | C2D G:Hem401 | 4.26 | Fe | NC G:Hem401 | 2.18 | Fe | CHB G:Hem401 | 3.35 | Fe | CHC G:Hem401 | 3.59 | Fe | C3D G:Hem401 | 4.36 | Fe | NA G:Hem401 | 2.10 | Fe | CHA G:Hem401 | 3.59 | Fe | C2A G:Hem401 | 4.37 | Fe | C1D G:Hem401 | 3.01 | Fe | C4A G:Hem401 | 3.07 | Fe | C4B G:Hem401 | 3.18 | Fe | C3A G:Hem401 | 4.31 | Fe | C4C G:Hem401 | 3.12 | Fe | C2B G:Hem401 | 4.28 | Fe | C1C G:Hem401 | 3.24 | Fe | C2C G:Hem401 | 4.43 | Fe | ND G:Hem401 | 2.12 | Fe | CHD G:Hem401 | 3.35 | Fe | C1B G:Hem401 | 3.02 | Fe | NB G:Hem401 | 2.10 | Fe | FE G:Hem401 | 0.00 | Fe | C3C G:Hem401 | 4.38 | Fe | C3B G:Hem401 | 4.36 | Fe | C4D G:Hem401 | 3.18 | Fe | C1A G:Hem401 | 3.18 | Fe | O G:Hoh663 | 2.94 |
| interactive model:
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Iron binding site 8 out of 8 in 3bk9
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Iron in the PDB 3bk9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: H: Gly125, H: His240, H: Val244, H: Trp402, H: Hem401, H: Hoh1542, |
conact list:
Atom | Atom | Distance (A) | Fe | N H:Gly125 | 4.90 | Fe | CA H:Gly125 | 4.86 | Fe | NE2 H:His240 | 2.21 | Fe | ND1 H:His240 | 4.26 | Fe | CD2 H:His240 | 3.15 | Fe | CE1 H:His240 | 3.16 | Fe | CG H:His240 | 4.28 | Fe | CG2 H:Val244 | 4.86 | Fe | N H:Trp402 | 4.54 | Fe | CD1 H:Trp402 | 4.54 | Fe | NE1 H:Trp402 | 4.79 | Fe | C2D H:Hem401 | 4.38 | Fe | NC H:Hem401 | 2.11 | Fe | CHB H:Hem401 | 3.48 | Fe | CHC H:Hem401 | 3.42 | Fe | C3D H:Hem401 | 4.37 | Fe | NA H:Hem401 | 2.12 | Fe | CHA H:Hem401 | 3.48 | Fe | C2A H:Hem401 | 4.35 | Fe | C1D H:Hem401 | 3.18 | Fe | C4A H:Hem401 | 3.13 | Fe | C4B H:Hem401 | 3.08 | Fe | C3A H:Hem401 | 4.36 | Fe | C4C H:Hem401 | 3.14 | Fe | C2B H:Hem401 | 4.37 | Fe | C1C H:Hem401 | 3.11 | Fe | C2C H:Hem401 | 4.36 | Fe | ND H:Hem401 | 2.18 | Fe | CHD H:Hem401 | 3.54 | Fe | C1B H:Hem401 | 3.15 | Fe | NB H:Hem401 | 2.10 | Fe | FE H:Hem401 | 0.00 | Fe | C3C H:Hem401 | 4.35 | Fe | C3B H:Hem401 | 4.33 | Fe | C4D H:Hem401 | 3.15 | Fe | C1A H:Hem401 | 3.13 | Fe | O H:Hoh1542 | 2.95 |
| interactive model:
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