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Iron in PDB 3bnc: Lipoxygenase-1 (Soybean) I553G Mutant

Enzymatic activity of Lipoxygenase-1 (Soybean) I553G Mutant

All present enzymatic activity of Lipoxygenase-1 (Soybean) I553G Mutant:
1.13.11.12;

Protein crystallography data

The structure of Lipoxygenase-1 (Soybean) I553G Mutant, PDB code: 3bnc was solved by D.R.Tomchick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.59 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 94.201, 92.278, 49.584, 90.00, 90.90, 90.00
R / Rfree (%) 16.9 / 20.1

Iron Binding Sites:

The binding sites of Iron atom in the Lipoxygenase-1 (Soybean) I553G Mutant (pdb code 3bnc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Lipoxygenase-1 (Soybean) I553G Mutant, PDB code: 3bnc:

Iron binding site 1 out of 1 in 3bnc

Go back to Iron Binding Sites List in 3bnc
Iron binding site 1 out of 1 in the Lipoxygenase-1 (Soybean) I553G Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Lipoxygenase-1 (Soybean) I553G Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe840

b:21.2
occ:0.80
O A:HOH841 2.2 21.2 1.0
NE2 A:HIS690 2.2 11.7 1.0
NE2 A:HIS504 2.2 17.2 1.0
NE2 A:HIS499 2.2 11.9 1.0
OXT A:ILE839 2.2 16.0 1.0
OD1 A:ASN694 2.8 19.1 1.0
CE1 A:HIS504 3.0 15.2 1.0
CE1 A:HIS499 3.0 14.1 1.0
CE1 A:HIS690 3.2 12.6 1.0
CD2 A:HIS690 3.2 13.6 1.0
C A:ILE839 3.2 16.8 1.0
CD2 A:HIS504 3.4 15.3 1.0
CD2 A:HIS499 3.4 11.3 1.0
O A:ILE839 3.4 17.5 1.0
CG A:ASN694 3.6 14.4 1.0
CB A:ASN694 4.1 11.5 1.0
ND1 A:HIS499 4.2 12.5 1.0
ND1 A:HIS504 4.2 16.1 1.0
ND1 A:HIS690 4.3 12.7 1.0
CG A:HIS690 4.3 11.0 1.0
CG2 A:ILE837 4.4 10.8 1.0
CG A:HIS499 4.4 9.7 1.0
CG A:HIS504 4.4 12.9 1.0
ND2 A:ASN694 4.5 12.5 1.0
CA A:ILE839 4.6 15.0 1.0
O A:HOH1674 4.6 52.8 1.0
N A:ILE839 4.9 13.4 1.0
CG2 A:ILE839 4.9 16.5 1.0
OG1 A:THR503 5.0 12.2 1.0

Reference:

M.P.Meyer, D.R.Tomchick, J.P.Klinman. Enzyme Structure and Dynamics Affect Hydrogen Tunneling: the Impact of A Remote Side Chain (I553) in Soybean Lipoxygenase-1. Proc.Natl.Acad.Sci.Usa V. 105 1146 2008.
ISSN: ISSN 0027-8424
PubMed: 18216254
DOI: 10.1073/PNAS.0710643105
Page generated: Sun Dec 13 15:02:03 2020

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