Iron in PDB 3cpx: Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution

The structure of Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution, PDB code: 3cpx was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.66 / 2.39
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	83.840, 83.840, 682.310, 90.00, 90.00, 120.00
R / Rfree (%)	18.7 / 22.3

The structure of Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Iron atom in the Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution (pdb code 3cpx). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution, PDB code: 3cpx:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in the Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe400 b:36.4 occ:1.00 O A:HOH462 1.8 35.8 1.0 NE2 A:HIS65 2.0 43.1 1.0 OD1 A:ASP146 2.0 46.1 1.0 OD1 A:ASP199 2.1 39.2 1.0 OD2 A:ASP199 2.3 41.4 1.0 O A:HOH463 2.5 34.3 1.0 CG A:ASP199 2.5 40.5 1.0 CE1 A:HIS65 2.9 43.3 1.0 CG A:ASP146 3.0 44.5 1.0 CD2 A:HIS65 3.0 43.2 1.0 OD2 A:ASP146 3.2 45.3 1.0 FE A:FE401 3.3 50.2 1.0 OE2 A:GLU173 3.5 42.6 1.0 OE1 A:GLU172 3.5 48.5 1.0 O A:HOH504 3.7 44.8 1.0 CB A:ASP147 4.0 42.5 1.0 CB A:ASP199 4.0 41.2 1.0 CD A:GLU172 4.0 47.4 1.0 ND1 A:HIS65 4.1 42.9 1.0 CG A:HIS65 4.1 42.5 1.0 OE2 A:GLU172 4.2 48.1 1.0 CD A:GLU173 4.3 42.5 1.0 CB A:ASP146 4.3 43.4 1.0 CG A:ASP147 4.4 43.3 1.0 N A:ILE200 4.6 43.1 1.0 O A:ILE200 4.7 43.7 1.0 O A:HOH464 4.7 33.5 1.0 CA A:ASP146 4.7 42.8 1.0 CA A:ASP147 4.8 41.7 1.0 C A:ASP146 4.8 42.4 1.0 N A:ASP147 4.8 41.7 1.0 OD2 A:ASP147 4.8 44.1 1.0 CA A:ASP199 4.8 42.4 1.0 OE1 A:GLU173 4.9 42.7 1.0 OD1 A:ASP147 4.9 43.3 1.0

Iron binding site 2 out of 6 in the Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe401 b:50.2 occ:1.00 OE2 A:GLU173 2.1 42.6 1.0 OD2 A:ASP146 2.2 45.3 1.0 NE2 A:HIS277 2.3 42.4 1.0 O A:HOH463 2.4 34.3 1.0 OE1 A:GLU173 2.6 42.7 1.0 CD A:GLU173 2.7 42.5 1.0 CE1 A:HIS277 3.1 42.5 1.0 O A:HOH462 3.1 35.8 1.0 CG A:ASP146 3.2 44.5 1.0 FE A:FE400 3.3 36.4 1.0 CD2 A:HIS277 3.4 41.7 1.0 OD1 A:ASP146 3.5 46.1 1.0 O A:HOH422 4.1 48.1 1.0 CG A:GLU173 4.1 42.4 1.0 O A:HOH504 4.3 44.8 1.0 ND1 A:HIS277 4.3 41.8 1.0 OE1 A:GLU172 4.3 48.5 1.0 CG A:HIS277 4.4 42.1 1.0 CB A:ASP146 4.5 43.4 1.0 NE2 A:HIS65 4.6 43.1 1.0 O A:HOH423 4.6 29.2 1.0 CE1 A:HIS65 4.6 43.3 1.0 O A:HOH417 4.6 38.3 1.0 CG2 A:ILE69 4.9 41.8 1.0

Iron binding site 3 out of 6 in the Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe400 b:44.8 occ:1.00 OD2 B:ASP146 2.0 47.3 1.0 OE2 B:GLU173 2.2 44.4 1.0 NE2 B:HIS277 2.2 42.8 1.0 O B:HOH452 2.3 38.8 1.0 OE1 B:GLU173 2.5 43.1 1.0 CD B:GLU173 2.7 42.9 1.0 CG B:ASP146 3.0 45.4 1.0 CE1 B:HIS277 3.1 43.2 1.0 FE B:FE401 3.2 35.8 1.0 CD2 B:HIS277 3.3 42.8 1.0 OD1 B:ASP146 3.3 45.6 1.0 O B:HOH451 3.5 42.7 1.0 OE1 B:GLU172 4.0 47.9 1.0 O B:HOH420 4.1 44.1 1.0 O B:HOH504 4.1 47.4 1.0 CG B:GLU173 4.1 43.2 1.0 O B:HOH414 4.3 21.4 1.0 ND1 B:HIS277 4.3 42.5 1.0 CB B:ASP146 4.3 44.2 1.0 CG B:HIS277 4.4 42.3 1.0 O B:HOH416 4.5 26.5 1.0 NE2 B:HIS65 4.6 43.1 1.0 CE1 B:HIS65 4.6 42.1 1.0 CG2 B:ILE69 4.7 41.9 1.0

Iron binding site 4 out of 6 in the Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe401 b:35.8 occ:1.00 OD1 B:ASP146 1.9 45.6 1.0 OD2 B:ASP199 2.1 41.0 1.0 NE2 B:HIS65 2.2 43.1 1.0 OD1 B:ASP199 2.4 40.9 1.0 O B:HOH451 2.5 42.7 1.0 CG B:ASP199 2.6 41.0 1.0 O B:HOH452 2.7 38.8 1.0 CG B:ASP146 2.8 45.4 1.0 CE1 B:HIS65 3.1 42.1 1.0 OD2 B:ASP146 3.1 47.3 1.0 FE B:FE400 3.2 44.8 1.0 O B:HOH504 3.2 47.4 1.0 CD2 B:HIS65 3.3 43.0 1.0 OE1 B:GLU172 3.4 47.9 1.0 OE2 B:GLU173 3.8 44.4 1.0 CD B:GLU172 4.0 46.5 1.0 CB B:ASP199 4.1 41.3 1.0 CB B:ASP147 4.1 41.8 1.0 CB B:ASP146 4.2 44.2 1.0 ND1 B:HIS65 4.3 42.7 1.0 OE2 B:GLU172 4.3 47.9 1.0 CG B:HIS65 4.4 42.8 1.0 CD B:GLU173 4.4 42.9 1.0 CG B:ASP147 4.6 42.0 1.0 O B:ILE200 4.7 44.8 1.0 CA B:ASP146 4.7 42.8 1.0 N B:ILE200 4.7 43.2 1.0 OE1 B:GLU173 4.7 43.1 1.0 OD2 B:ASP147 4.8 42.4 1.0 C B:ASP146 4.8 42.9 1.0 O B:HOH422 4.9 27.9 1.0 CG B:GLU172 4.9 45.6 1.0 N B:ASP147 4.9 41.8 1.0 CA B:ASP147 5.0 41.5 1.0

Iron binding site 5 out of 6 in the Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe400 b:54.9 occ:1.00 OE2 C:GLU173 2.0 41.4 1.0 OD2 C:ASP146 2.1 44.6 1.0 NE2 C:HIS277 2.3 43.0 1.0 OE1 C:GLU173 2.6 41.3 1.0 CD C:GLU173 2.6 41.6 1.0 CG C:ASP146 3.1 44.1 1.0 CE1 C:HIS277 3.3 42.2 1.0 CD2 C:HIS277 3.3 42.0 1.0 FE C:FE401 3.3 38.1 1.0 O C:HOH450 3.3 29.8 1.0 OD1 C:ASP146 3.5 47.0 1.0 O C:HOH459 3.9 50.6 1.0 CG C:GLU173 4.1 42.1 1.0 OE1 C:GLU172 4.2 48.4 1.0 ND1 C:HIS277 4.4 42.8 1.0 CB C:ASP146 4.4 44.2 1.0 CG C:HIS277 4.4 42.1 1.0 O C:HOH419 4.5 34.1 1.0 NE2 C:HIS65 4.6 41.5 1.0 CE1 C:HIS65 4.6 42.6 1.0 CG2 C:ILE69 4.8 40.4 1.0

Iron binding site 6 out of 6 in the Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Putative M42 Glutamyl Aminopeptidase (YP_676701.1) From Cytophaga Hutchinsonii Atcc 33406 at 2.39 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe401 b:38.1 occ:1.00 O C:HOH450 1.8 29.8 1.0 NE2 C:HIS65 1.9 41.5 1.0 OD1 C:ASP199 2.0 36.9 1.0 OD1 C:ASP146 2.2 47.0 1.0 OD2 C:ASP199 2.6 40.4 1.0 CG C:ASP199 2.6 40.4 1.0 CE1 C:HIS65 2.8 42.6 1.0 CD2 C:HIS65 3.0 42.5 1.0 CG C:ASP146 3.0 44.1 1.0 O C:HOH459 3.2 50.6 1.0 OD2 C:ASP146 3.3 44.6 1.0 FE C:FE400 3.3 54.9 1.0 OE2 C:GLU173 3.3 41.4 1.0 OE1 C:GLU172 3.5 48.4 1.0 CD C:GLU172 3.9 47.2 1.0 ND1 C:HIS65 4.0 41.7 1.0 CB C:ASP147 4.0 42.5 1.0 OE2 C:GLU172 4.0 49.1 1.0 CG C:HIS65 4.1 42.3 1.0 CB C:ASP199 4.2 41.4 1.0 CD C:GLU173 4.2 41.6 1.0 CB C:ASP146 4.4 44.2 1.0 CG C:ASP147 4.5 43.4 1.0 O C:ILE200 4.6 44.7 1.0 N C:ILE200 4.6 43.9 1.0 CA C:ASP146 4.7 43.7 1.0 OD2 C:ASP147 4.8 44.7 1.0 CA C:ASP147 4.8 43.0 1.0 C C:ASP146 4.8 42.8 1.0 O C:HOH447 4.8 30.6 1.0 N C:ASP147 4.8 42.5 1.0 OE1 C:GLU173 4.9 41.3 1.0 CA C:ASP199 5.0 41.8 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.