Iron in PDB 3cxh: Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer.
Enzymatic activity of Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer.
All present enzymatic activity of Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer.:
1.10.2.2;
Protein crystallography data
The structure of Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer., PDB code: 3cxh
was solved by
S.R.N.Solmaz,
C.Hunte,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.97 /
2.50
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
145.540,
162.970,
194.230,
90.00,
104.39,
90.00
|
R / Rfree (%)
|
22.5 /
25.6
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Iron atom in the Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer.
(pdb code 3cxh). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 11 binding sites of Iron where determined in the
Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer., PDB code: 3cxh:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 11 in 3cxh
Go back to
Iron Binding Sites List in 3cxh
Iron binding site 1 out
of 11 in the Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe4001
b:30.1
occ:1.00
|
FE
|
C:HEM4001
|
0.0
|
30.1
|
1.0
|
ND
|
C:HEM4001
|
2.0
|
25.5
|
1.0
|
NE2
|
C:HIS82
|
2.0
|
29.1
|
1.0
|
NC
|
C:HEM4001
|
2.0
|
25.7
|
1.0
|
NE2
|
C:HIS183
|
2.0
|
29.9
|
1.0
|
NA
|
C:HEM4001
|
2.0
|
25.9
|
1.0
|
NB
|
C:HEM4001
|
2.0
|
21.8
|
1.0
|
CE1
|
C:HIS183
|
2.9
|
31.0
|
1.0
|
CE1
|
C:HIS82
|
2.9
|
29.3
|
1.0
|
C1D
|
C:HEM4001
|
3.0
|
26.7
|
1.0
|
C4D
|
C:HEM4001
|
3.0
|
25.2
|
1.0
|
C4C
|
C:HEM4001
|
3.0
|
26.0
|
1.0
|
C1A
|
C:HEM4001
|
3.0
|
26.0
|
1.0
|
C1C
|
C:HEM4001
|
3.0
|
28.1
|
1.0
|
C1B
|
C:HEM4001
|
3.1
|
25.1
|
1.0
|
C4B
|
C:HEM4001
|
3.1
|
24.1
|
1.0
|
C4A
|
C:HEM4001
|
3.1
|
27.5
|
1.0
|
CD2
|
C:HIS82
|
3.1
|
28.3
|
1.0
|
CD2
|
C:HIS183
|
3.1
|
28.2
|
1.0
|
CHD
|
C:HEM4001
|
3.4
|
25.4
|
1.0
|
CHA
|
C:HEM4001
|
3.4
|
27.2
|
1.0
|
CHC
|
C:HEM4001
|
3.4
|
25.5
|
1.0
|
CHB
|
C:HEM4001
|
3.4
|
26.1
|
1.0
|
ND1
|
C:HIS183
|
4.1
|
30.3
|
1.0
|
ND1
|
C:HIS82
|
4.1
|
31.2
|
1.0
|
CG
|
C:HIS183
|
4.2
|
30.1
|
1.0
|
CG
|
C:HIS82
|
4.2
|
31.7
|
1.0
|
C2D
|
C:HEM4001
|
4.2
|
25.2
|
1.0
|
C3D
|
C:HEM4001
|
4.2
|
26.4
|
1.0
|
C3C
|
C:HEM4001
|
4.3
|
26.9
|
1.0
|
C2A
|
C:HEM4001
|
4.3
|
25.1
|
1.0
|
C2C
|
C:HEM4001
|
4.3
|
28.1
|
1.0
|
C2B
|
C:HEM4001
|
4.3
|
23.9
|
1.0
|
C3B
|
C:HEM4001
|
4.3
|
24.1
|
1.0
|
C3A
|
C:HEM4001
|
4.3
|
24.1
|
1.0
|
CA
|
C:GLY131
|
4.7
|
28.4
|
1.0
|
|
Iron binding site 2 out
of 11 in 3cxh
Go back to
Iron Binding Sites List in 3cxh
Iron binding site 2 out
of 11 in the Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe4002
b:28.5
occ:1.00
|
FE
|
C:HEM4002
|
0.0
|
28.5
|
1.0
|
ND
|
C:HEM4002
|
2.0
|
24.5
|
1.0
|
NC
|
C:HEM4002
|
2.0
|
27.5
|
1.0
|
NE2
|
C:HIS197
|
2.0
|
31.9
|
1.0
|
NB
|
C:HEM4002
|
2.0
|
25.3
|
1.0
|
NE2
|
C:HIS96
|
2.0
|
29.7
|
1.0
|
NA
|
C:HEM4002
|
2.0
|
25.6
|
1.0
|
C1D
|
C:HEM4002
|
3.0
|
27.1
|
1.0
|
CE1
|
C:HIS197
|
3.0
|
30.3
|
1.0
|
C4C
|
C:HEM4002
|
3.0
|
27.1
|
1.0
|
C4D
|
C:HEM4002
|
3.0
|
26.3
|
1.0
|
CE1
|
C:HIS96
|
3.0
|
30.5
|
1.0
|
CD2
|
C:HIS96
|
3.1
|
29.3
|
1.0
|
C1C
|
C:HEM4002
|
3.1
|
27.2
|
1.0
|
C1B
|
C:HEM4002
|
3.1
|
25.7
|
1.0
|
CD2
|
C:HIS197
|
3.1
|
32.4
|
1.0
|
C4B
|
C:HEM4002
|
3.1
|
25.8
|
1.0
|
C4A
|
C:HEM4002
|
3.1
|
24.1
|
1.0
|
C1A
|
C:HEM4002
|
3.1
|
26.4
|
1.0
|
CHD
|
C:HEM4002
|
3.3
|
26.7
|
1.0
|
CHA
|
C:HEM4002
|
3.4
|
27.4
|
1.0
|
CHB
|
C:HEM4002
|
3.4
|
24.1
|
1.0
|
CHC
|
C:HEM4002
|
3.4
|
24.6
|
1.0
|
ND1
|
C:HIS197
|
4.1
|
32.1
|
1.0
|
CG
|
C:HIS197
|
4.2
|
34.5
|
1.0
|
ND1
|
C:HIS96
|
4.2
|
28.6
|
1.0
|
C2D
|
C:HEM4002
|
4.2
|
27.0
|
1.0
|
CG
|
C:HIS96
|
4.2
|
30.3
|
1.0
|
C3D
|
C:HEM4002
|
4.2
|
27.4
|
1.0
|
C3C
|
C:HEM4002
|
4.2
|
27.4
|
1.0
|
C2C
|
C:HEM4002
|
4.3
|
24.8
|
1.0
|
C2B
|
C:HEM4002
|
4.3
|
21.8
|
1.0
|
C3B
|
C:HEM4002
|
4.3
|
23.8
|
1.0
|
C2A
|
C:HEM4002
|
4.3
|
25.1
|
1.0
|
C3A
|
C:HEM4002
|
4.3
|
24.2
|
1.0
|
O
|
C:HOH5023
|
5.0
|
34.4
|
1.0
|
|
Iron binding site 3 out
of 11 in 3cxh
Go back to
Iron Binding Sites List in 3cxh
Iron binding site 3 out
of 11 in the Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe4003
b:43.7
occ:1.00
|
FE
|
D:HEM4003
|
0.0
|
43.7
|
1.0
|
NE2
|
D:HIS105
|
2.0
|
41.9
|
1.0
|
NC
|
D:HEM4003
|
2.0
|
41.7
|
1.0
|
NB
|
D:HEM4003
|
2.0
|
41.0
|
1.0
|
ND
|
D:HEM4003
|
2.0
|
38.1
|
1.0
|
NA
|
D:HEM4003
|
2.0
|
39.8
|
1.0
|
SD
|
D:MET225
|
2.1
|
45.4
|
1.0
|
CE1
|
D:HIS105
|
2.9
|
42.0
|
1.0
|
C4C
|
D:HEM4003
|
3.0
|
42.2
|
1.0
|
C1C
|
D:HEM4003
|
3.0
|
41.9
|
1.0
|
CD2
|
D:HIS105
|
3.0
|
41.0
|
1.0
|
C1D
|
D:HEM4003
|
3.0
|
38.5
|
1.0
|
C4B
|
D:HEM4003
|
3.0
|
41.2
|
1.0
|
C1B
|
D:HEM4003
|
3.1
|
39.4
|
1.0
|
C4A
|
D:HEM4003
|
3.1
|
39.0
|
1.0
|
C1A
|
D:HEM4003
|
3.1
|
39.5
|
1.0
|
C4D
|
D:HEM4003
|
3.1
|
37.1
|
1.0
|
CHD
|
D:HEM4003
|
3.4
|
40.5
|
1.0
|
CHC
|
D:HEM4003
|
3.4
|
41.4
|
1.0
|
CHB
|
D:HEM4003
|
3.4
|
38.2
|
1.0
|
CHA
|
D:HEM4003
|
3.4
|
38.2
|
1.0
|
CE
|
D:MET225
|
3.4
|
41.8
|
1.0
|
CG
|
D:MET225
|
3.5
|
43.2
|
1.0
|
ND1
|
D:HIS105
|
4.0
|
40.9
|
1.0
|
CG
|
D:HIS105
|
4.1
|
39.3
|
1.0
|
CB
|
D:MET225
|
4.2
|
45.6
|
1.0
|
C3C
|
D:HEM4003
|
4.2
|
41.7
|
1.0
|
C2C
|
D:HEM4003
|
4.3
|
41.1
|
1.0
|
C3B
|
D:HEM4003
|
4.3
|
41.5
|
1.0
|
C2B
|
D:HEM4003
|
4.3
|
40.8
|
1.0
|
C2D
|
D:HEM4003
|
4.3
|
38.2
|
1.0
|
C3A
|
D:HEM4003
|
4.3
|
37.7
|
1.0
|
C2A
|
D:HEM4003
|
4.3
|
39.0
|
1.0
|
C3D
|
D:HEM4003
|
4.3
|
35.7
|
1.0
|
|
Iron binding site 4 out
of 11 in 3cxh
Go back to
Iron Binding Sites List in 3cxh
Iron binding site 4 out
of 11 in the Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe4004
b:37.1
occ:1.00
|
FE1
|
E:FES4004
|
0.0
|
37.1
|
1.0
|
S2
|
E:FES4004
|
2.2
|
32.6
|
1.0
|
S1
|
E:FES4004
|
2.2
|
30.1
|
1.0
|
SG
|
E:CYS178
|
2.2
|
36.2
|
1.0
|
SG
|
E:CYS159
|
2.2
|
37.5
|
1.0
|
FE2
|
E:FES4004
|
2.9
|
32.4
|
1.0
|
CB
|
E:CYS178
|
3.0
|
35.2
|
1.0
|
CB
|
E:CYS159
|
3.1
|
36.6
|
1.0
|
CB
|
E:HIS161
|
4.1
|
32.8
|
1.0
|
CB
|
E:CYS180
|
4.3
|
38.9
|
1.0
|
CA
|
E:CYS178
|
4.4
|
37.0
|
1.0
|
CB
|
E:CYS164
|
4.4
|
37.6
|
1.0
|
OG
|
E:SER183
|
4.5
|
38.5
|
1.0
|
N
|
E:HIS181
|
4.5
|
35.3
|
1.0
|
CB
|
E:SER183
|
4.5
|
35.8
|
1.0
|
CA
|
E:CYS159
|
4.6
|
36.8
|
1.0
|
ND1
|
E:HIS161
|
4.6
|
34.0
|
1.0
|
ND1
|
E:HIS181
|
4.7
|
34.3
|
1.0
|
N
|
E:CYS164
|
4.7
|
36.1
|
1.0
|
N
|
E:LEU162
|
4.8
|
34.1
|
1.0
|
C
|
E:CYS178
|
4.8
|
37.5
|
1.0
|
CG
|
E:HIS161
|
4.9
|
33.4
|
1.0
|
O
|
E:CYS178
|
4.9
|
40.0
|
1.0
|
N
|
E:CYS180
|
5.0
|
38.1
|
1.0
|
|
Iron binding site 5 out
of 11 in 3cxh
Go back to
Iron Binding Sites List in 3cxh
Iron binding site 5 out
of 11 in the Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe4004
b:32.4
occ:1.00
|
FE2
|
E:FES4004
|
0.0
|
32.4
|
1.0
|
ND1
|
E:HIS161
|
2.1
|
34.0
|
1.0
|
S2
|
E:FES4004
|
2.1
|
32.6
|
1.0
|
ND1
|
E:HIS181
|
2.1
|
34.3
|
1.0
|
S1
|
E:FES4004
|
2.2
|
30.1
|
1.0
|
FE1
|
E:FES4004
|
2.9
|
37.1
|
1.0
|
CG
|
E:HIS181
|
3.0
|
34.4
|
1.0
|
CG
|
E:HIS161
|
3.1
|
33.4
|
1.0
|
CE1
|
E:HIS161
|
3.1
|
32.3
|
1.0
|
CB
|
E:HIS181
|
3.2
|
34.8
|
1.0
|
CE1
|
E:HIS181
|
3.2
|
32.9
|
1.0
|
CB
|
E:HIS161
|
3.3
|
32.8
|
1.0
|
N
|
E:HIS181
|
3.7
|
35.3
|
1.0
|
N
|
E:LEU162
|
3.9
|
34.1
|
1.0
|
CA
|
E:HIS181
|
4.0
|
35.4
|
1.0
|
CB
|
E:CYS180
|
4.2
|
38.9
|
1.0
|
CD2
|
E:HIS181
|
4.2
|
35.6
|
1.0
|
CB
|
E:LEU162
|
4.2
|
30.8
|
1.0
|
CD2
|
E:HIS161
|
4.2
|
33.1
|
1.0
|
NE2
|
E:HIS161
|
4.3
|
32.1
|
1.0
|
NE2
|
E:HIS181
|
4.3
|
34.7
|
1.0
|
C
|
E:CYS180
|
4.4
|
37.5
|
1.0
|
SG
|
E:CYS159
|
4.4
|
37.5
|
1.0
|
CG
|
E:LEU162
|
4.5
|
30.0
|
1.0
|
CA
|
E:HIS161
|
4.6
|
35.2
|
1.0
|
CA
|
E:LEU162
|
4.6
|
32.7
|
1.0
|
C
|
E:HIS161
|
4.7
|
35.9
|
1.0
|
CD1
|
E:LEU162
|
4.7
|
27.9
|
1.0
|
SG
|
E:CYS178
|
4.7
|
36.2
|
1.0
|
CG
|
E:PRO195
|
4.7
|
35.6
|
1.0
|
C
|
E:HIS181
|
4.8
|
36.2
|
1.0
|
CA
|
E:CYS180
|
4.9
|
38.4
|
1.0
|
|
Iron binding site 6 out
of 11 in 3cxh
Go back to
Iron Binding Sites List in 3cxh
Iron binding site 6 out
of 11 in the Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe4021
b:26.3
occ:1.00
|
FE
|
N:HEM4021
|
0.0
|
26.3
|
1.0
|
NC
|
N:HEM4021
|
1.9
|
23.1
|
1.0
|
ND
|
N:HEM4021
|
2.0
|
19.9
|
1.0
|
NB
|
N:HEM4021
|
2.0
|
22.7
|
1.0
|
NE2
|
N:HIS183
|
2.0
|
27.6
|
1.0
|
NE2
|
N:HIS82
|
2.0
|
25.4
|
1.0
|
NA
|
N:HEM4021
|
2.0
|
18.7
|
1.0
|
C4C
|
N:HEM4021
|
3.0
|
23.9
|
1.0
|
C1C
|
N:HEM4021
|
3.0
|
27.1
|
1.0
|
C1D
|
N:HEM4021
|
3.0
|
23.3
|
1.0
|
CE1
|
N:HIS183
|
3.0
|
27.2
|
1.0
|
CE1
|
N:HIS82
|
3.0
|
24.5
|
1.0
|
C4B
|
N:HEM4021
|
3.0
|
24.0
|
1.0
|
C4D
|
N:HEM4021
|
3.0
|
21.3
|
1.0
|
C1A
|
N:HEM4021
|
3.1
|
20.1
|
1.0
|
CD2
|
N:HIS82
|
3.1
|
25.8
|
1.0
|
CD2
|
N:HIS183
|
3.1
|
27.2
|
1.0
|
C1B
|
N:HEM4021
|
3.1
|
22.9
|
1.0
|
C4A
|
N:HEM4021
|
3.1
|
19.2
|
1.0
|
CHD
|
N:HEM4021
|
3.4
|
25.7
|
1.0
|
CHC
|
N:HEM4021
|
3.4
|
25.8
|
1.0
|
CHA
|
N:HEM4021
|
3.4
|
22.0
|
1.0
|
CHB
|
N:HEM4021
|
3.5
|
22.1
|
1.0
|
ND1
|
N:HIS183
|
4.2
|
29.6
|
1.0
|
ND1
|
N:HIS82
|
4.2
|
26.6
|
1.0
|
C3C
|
N:HEM4021
|
4.2
|
25.5
|
1.0
|
CG
|
N:HIS82
|
4.2
|
27.6
|
1.0
|
C2C
|
N:HEM4021
|
4.2
|
25.4
|
1.0
|
CG
|
N:HIS183
|
4.2
|
28.1
|
1.0
|
C2D
|
N:HEM4021
|
4.2
|
20.8
|
1.0
|
C3D
|
N:HEM4021
|
4.3
|
21.1
|
1.0
|
C3B
|
N:HEM4021
|
4.3
|
22.5
|
1.0
|
C2B
|
N:HEM4021
|
4.3
|
21.7
|
1.0
|
C2A
|
N:HEM4021
|
4.3
|
20.6
|
1.0
|
C3A
|
N:HEM4021
|
4.3
|
18.8
|
1.0
|
CA
|
N:GLY131
|
4.6
|
31.2
|
1.0
|
OE1
|
N:GLN43
|
4.8
|
31.7
|
1.0
|
|
Iron binding site 7 out
of 11 in 3cxh
Go back to
Iron Binding Sites List in 3cxh
Iron binding site 7 out
of 11 in the Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe4022
b:24.8
occ:1.00
|
FE
|
N:HEM4022
|
0.0
|
24.8
|
1.0
|
NC
|
N:HEM4022
|
2.0
|
23.2
|
1.0
|
NE2
|
N:HIS197
|
2.0
|
27.5
|
1.0
|
NB
|
N:HEM4022
|
2.0
|
25.6
|
1.0
|
ND
|
N:HEM4022
|
2.0
|
23.2
|
1.0
|
NE2
|
N:HIS96
|
2.0
|
25.4
|
1.0
|
NA
|
N:HEM4022
|
2.0
|
24.0
|
1.0
|
CE1
|
N:HIS197
|
3.0
|
25.4
|
1.0
|
C4C
|
N:HEM4022
|
3.0
|
21.8
|
1.0
|
CD2
|
N:HIS197
|
3.0
|
28.9
|
1.0
|
C1D
|
N:HEM4022
|
3.0
|
21.4
|
1.0
|
C1C
|
N:HEM4022
|
3.0
|
25.4
|
1.0
|
C1B
|
N:HEM4022
|
3.0
|
24.8
|
1.0
|
C4B
|
N:HEM4022
|
3.0
|
24.4
|
1.0
|
CE1
|
N:HIS96
|
3.0
|
23.0
|
1.0
|
CD2
|
N:HIS96
|
3.1
|
27.3
|
1.0
|
C4D
|
N:HEM4022
|
3.1
|
22.2
|
1.0
|
C4A
|
N:HEM4022
|
3.1
|
22.4
|
1.0
|
C1A
|
N:HEM4022
|
3.1
|
23.7
|
1.0
|
CHD
|
N:HEM4022
|
3.3
|
22.4
|
1.0
|
CHC
|
N:HEM4022
|
3.4
|
22.0
|
1.0
|
CHB
|
N:HEM4022
|
3.4
|
21.2
|
1.0
|
CHA
|
N:HEM4022
|
3.5
|
22.0
|
1.0
|
ND1
|
N:HIS197
|
4.1
|
26.2
|
1.0
|
CG
|
N:HIS197
|
4.1
|
29.7
|
1.0
|
ND1
|
N:HIS96
|
4.2
|
24.0
|
1.0
|
CG
|
N:HIS96
|
4.2
|
27.0
|
1.0
|
C3C
|
N:HEM4022
|
4.2
|
22.4
|
1.0
|
C2D
|
N:HEM4022
|
4.2
|
21.6
|
1.0
|
C2C
|
N:HEM4022
|
4.2
|
21.6
|
1.0
|
C2B
|
N:HEM4022
|
4.3
|
22.6
|
1.0
|
C3B
|
N:HEM4022
|
4.3
|
25.1
|
1.0
|
C3D
|
N:HEM4022
|
4.3
|
23.7
|
1.0
|
C3A
|
N:HEM4022
|
4.3
|
22.5
|
1.0
|
C2A
|
N:HEM4022
|
4.3
|
21.1
|
1.0
|
O
|
N:HOH5523
|
4.9
|
29.1
|
1.0
|
|
Iron binding site 8 out
of 11 in 3cxh
Go back to
Iron Binding Sites List in 3cxh
Iron binding site 8 out
of 11 in the Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Fe4023
b:37.7
occ:1.00
|
FE
|
O:HEM4023
|
0.0
|
37.7
|
1.0
|
NE2
|
O:HIS105
|
1.9
|
35.4
|
1.0
|
ND
|
O:HEM4023
|
2.0
|
35.7
|
1.0
|
NC
|
O:HEM4023
|
2.0
|
37.2
|
1.0
|
NA
|
O:HEM4023
|
2.0
|
34.5
|
1.0
|
NB
|
O:HEM4023
|
2.1
|
37.5
|
1.0
|
SD
|
O:MET225
|
2.1
|
39.0
|
1.0
|
CE1
|
O:HIS105
|
2.9
|
34.6
|
1.0
|
CD2
|
O:HIS105
|
3.0
|
34.1
|
1.0
|
C1D
|
O:HEM4023
|
3.0
|
37.7
|
1.0
|
C4C
|
O:HEM4023
|
3.0
|
37.1
|
1.0
|
C4D
|
O:HEM4023
|
3.0
|
37.6
|
1.0
|
C1A
|
O:HEM4023
|
3.0
|
35.4
|
1.0
|
C4A
|
O:HEM4023
|
3.0
|
34.5
|
1.0
|
C1C
|
O:HEM4023
|
3.1
|
37.1
|
1.0
|
C1B
|
O:HEM4023
|
3.1
|
36.2
|
1.0
|
C4B
|
O:HEM4023
|
3.1
|
38.4
|
1.0
|
CHD
|
O:HEM4023
|
3.4
|
38.6
|
1.0
|
CHA
|
O:HEM4023
|
3.4
|
35.9
|
1.0
|
CHB
|
O:HEM4023
|
3.4
|
35.4
|
1.0
|
CE
|
O:MET225
|
3.4
|
36.7
|
1.0
|
CHC
|
O:HEM4023
|
3.4
|
36.7
|
1.0
|
CG
|
O:MET225
|
3.5
|
36.1
|
1.0
|
ND1
|
O:HIS105
|
4.1
|
34.1
|
1.0
|
CB
|
O:MET225
|
4.1
|
39.7
|
1.0
|
CG
|
O:HIS105
|
4.1
|
33.7
|
1.0
|
C3C
|
O:HEM4023
|
4.2
|
37.2
|
1.0
|
C2D
|
O:HEM4023
|
4.3
|
38.1
|
1.0
|
C3D
|
O:HEM4023
|
4.3
|
37.2
|
1.0
|
C2C
|
O:HEM4023
|
4.3
|
36.3
|
1.0
|
C3A
|
O:HEM4023
|
4.3
|
35.2
|
1.0
|
C2A
|
O:HEM4023
|
4.3
|
35.1
|
1.0
|
C2B
|
O:HEM4023
|
4.3
|
36.8
|
1.0
|
C3B
|
O:HEM4023
|
4.3
|
37.9
|
1.0
|
|
Iron binding site 9 out
of 11 in 3cxh
Go back to
Iron Binding Sites List in 3cxh
Iron binding site 9 out
of 11 in the Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe4024
b:36.9
occ:1.00
|
FE1
|
P:FES4024
|
0.0
|
36.9
|
1.0
|
S1
|
P:FES4024
|
2.1
|
37.1
|
1.0
|
S2
|
P:FES4024
|
2.2
|
32.4
|
1.0
|
SG
|
P:CYS178
|
2.2
|
40.7
|
1.0
|
SG
|
P:CYS159
|
2.3
|
33.8
|
1.0
|
FE2
|
P:FES4024
|
2.9
|
36.5
|
1.0
|
CB
|
P:CYS178
|
3.0
|
39.3
|
1.0
|
CB
|
P:CYS159
|
3.0
|
32.0
|
1.0
|
CB
|
P:HIS161
|
4.1
|
35.8
|
1.0
|
CB
|
P:CYS180
|
4.3
|
38.4
|
1.0
|
N
|
P:HIS181
|
4.4
|
38.2
|
1.0
|
CB
|
P:CYS164
|
4.4
|
38.3
|
1.0
|
CA
|
P:CYS178
|
4.4
|
38.5
|
1.0
|
CB
|
P:SER183
|
4.5
|
38.5
|
1.0
|
OG
|
P:SER183
|
4.5
|
39.9
|
1.0
|
CA
|
P:CYS159
|
4.5
|
35.8
|
1.0
|
ND1
|
P:HIS161
|
4.5
|
34.2
|
1.0
|
ND1
|
P:HIS181
|
4.6
|
34.6
|
1.0
|
C
|
P:CYS178
|
4.8
|
38.6
|
1.0
|
N
|
P:LEU162
|
4.8
|
34.7
|
1.0
|
N
|
P:CYS164
|
4.8
|
37.5
|
1.0
|
N
|
P:CYS180
|
4.8
|
39.6
|
1.0
|
CG
|
P:HIS161
|
4.8
|
36.0
|
1.0
|
O
|
P:CYS178
|
4.9
|
37.4
|
1.0
|
CA
|
P:CYS180
|
4.9
|
38.9
|
1.0
|
O
|
P:CYS164
|
5.0
|
37.4
|
1.0
|
|
Iron binding site 10 out
of 11 in 3cxh
Go back to
Iron Binding Sites List in 3cxh
Iron binding site 10 out
of 11 in the Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Structure of Yeast Complex III with Isoform-2 Cytochrome C Bound and Definition of A Minimal Core Interface For Electron Transfer. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe4024
b:36.5
occ:1.00
|
FE2
|
P:FES4024
|
0.0
|
36.5
|
1.0
|
ND1
|
P:HIS161
|
2.1
|
34.2
|
1.0
|
S2
|
P:FES4024
|
2.1
|
32.4
|
1.0
|
ND1
|
P:HIS181
|
2.1
|
34.6
|
1.0
|
S1
|
P:FES4024
|
2.2
|
37.1
|
1.0
|
CG
|
P:HIS181
|
2.9
|
33.7
|
1.0
|
FE1
|
P:FES4024
|
2.9
|
36.9
|
1.0
|
CB
|
P:HIS181
|
3.1
|
37.4
|
1.0
|
CG
|
P:HIS161
|
3.1
|
36.0
|
1.0
|
CE1
|
P:HIS161
|
3.1
|
36.6
|
1.0
|
CE1
|
P:HIS181
|
3.2
|
32.0
|
1.0
|
CB
|
P:HIS161
|
3.4
|
35.8
|
1.0
|
N
|
P:HIS181
|
3.6
|
38.2
|
1.0
|
CA
|
P:HIS181
|
3.9
|
37.4
|
1.0
|
N
|
P:LEU162
|
4.0
|
34.7
|
1.0
|
CB
|
P:CYS180
|
4.0
|
38.4
|
1.0
|
CD2
|
P:HIS181
|
4.1
|
36.0
|
1.0
|
C
|
P:CYS180
|
4.2
|
38.7
|
1.0
|
NE2
|
P:HIS181
|
4.2
|
36.2
|
1.0
|
CD2
|
P:HIS161
|
4.3
|
36.5
|
1.0
|
NE2
|
P:HIS161
|
4.3
|
36.2
|
1.0
|
CB
|
P:LEU162
|
4.3
|
32.7
|
1.0
|
SG
|
P:CYS159
|
4.3
|
33.8
|
1.0
|
CG
|
P:LEU162
|
4.5
|
32.3
|
1.0
|
SG
|
P:CYS178
|
4.6
|
40.7
|
1.0
|
CA
|
P:HIS161
|
4.6
|
35.1
|
1.0
|
CA
|
P:CYS180
|
4.7
|
38.9
|
1.0
|
CA
|
P:LEU162
|
4.7
|
35.8
|
1.0
|
CG
|
P:PRO195
|
4.7
|
37.6
|
1.0
|
C
|
P:HIS161
|
4.7
|
36.3
|
1.0
|
CD1
|
P:LEU162
|
4.7
|
33.5
|
1.0
|
C
|
P:HIS181
|
4.7
|
39.9
|
1.0
|
O
|
P:CYS180
|
4.9
|
40.4
|
1.0
|
|
Reference:
S.R.Solmaz,
C.Hunte.
Structure of Complex III with Bound Cytochrome C in Reduced State and Definition of A Minimal Core Interface For Electron Transfer. J.Biol.Chem. V. 283 17542 2008.
ISSN: ISSN 0021-9258
PubMed: 18390544
DOI: 10.1074/JBC.M710126200
Page generated: Sun Aug 4 08:34:56 2024
|