Iron in PDB 3d89: Crystal Structure of A Soluble Rieske Ferredoxin From Mus Musculus

The structure of Crystal Structure of A Soluble Rieske Ferredoxin From Mus Musculus, PDB code: 3d89 was solved by E.J.Levin, J.G.Mccoy, N.L.Elsen, K.D.Seder, C.A.Bingman, G.E.Wesenberg, B.G.Fox, G.N.Phillips Jr., Center For Eukaryotic Structural Genomics(Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.75 / 2.07
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	52.413, 52.413, 108.808, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 22.8

The binding sites of Iron atom in the Crystal Structure of A Soluble Rieske Ferredoxin From Mus Musculus (pdb code 3d89). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of A Soluble Rieske Ferredoxin From Mus Musculus, PDB code: 3d89:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of A Soluble Rieske Ferredoxin From Mus Musculus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Soluble Rieske Ferredoxin From Mus Musculus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:42.5 occ:1.00 FE1 A:FES201 0.0 42.5 1.0 ND1 A:HIS59 2.1 32.8 1.0 S1 A:FES201 2.1 41.8 1.0 S2 A:FES201 2.2 40.3 1.0 ND1 A:HIS83 2.2 32.8 1.0 FE2 A:FES201 2.7 40.9 1.0 CG A:HIS59 3.1 31.9 1.0 CE1 A:HIS59 3.1 36.9 1.0 CG A:HIS83 3.2 31.6 1.0 CE1 A:HIS83 3.2 32.8 1.0 CB A:HIS59 3.4 34.0 1.0 CB A:HIS83 3.4 31.0 1.0 N A:HIS83 3.7 30.4 1.0 N A:SER60 4.1 34.1 1.0 CA A:HIS83 4.1 29.9 1.0 CB A:SER60 4.2 35.7 1.0 NE2 A:HIS59 4.2 36.4 1.0 CD2 A:HIS59 4.2 31.9 1.0 NE2 A:HIS83 4.3 34.5 1.0 CD2 A:HIS83 4.3 34.4 1.0 CB A:TRP82 4.4 32.5 1.0 SG A:CYS57 4.5 35.7 1.0 SG A:CYS80 4.5 35.5 1.0 OG A:SER60 4.6 40.9 1.0 CA A:HIS59 4.6 34.0 1.0 C A:HIS59 4.7 34.3 1.0 C A:TRP82 4.7 30.5 1.0 CA A:SER60 4.8 35.6 1.0 CD1 A:TYR85 4.9 33.3 1.0 C A:HIS83 4.9 31.8 1.0

Iron binding site 2 out of 2 in the Crystal Structure of A Soluble Rieske Ferredoxin From Mus Musculus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Soluble Rieske Ferredoxin From Mus Musculus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:40.9 occ:1.00 FE2 A:FES201 0.0 40.9 1.0 S2 A:FES201 2.1 40.3 1.0 S1 A:FES201 2.2 41.8 1.0 SG A:CYS80 2.3 35.5 1.0 SG A:CYS57 2.4 35.7 1.0 FE1 A:FES201 2.7 42.5 1.0 CB A:CYS80 2.9 34.8 1.0 CB A:CYS57 3.0 35.4 1.0 CB A:HIS59 4.0 34.0 1.0 N A:HIS83 4.3 30.4 1.0 ND1 A:HIS59 4.4 32.8 1.0 CA A:CYS80 4.4 34.0 1.0 N A:GLY62 4.4 34.3 1.0 CA A:CYS57 4.5 34.8 1.0 ND1 A:HIS83 4.5 32.8 1.0 CA A:GLY62 4.5 33.3 1.0 CB A:TRP82 4.6 32.5 1.0 CG A:HIS59 4.7 31.9 1.0 N A:SER60 4.8 34.1 1.0 CB A:TYR85 4.9 34.0 1.0 N A:HIS59 4.9 34.4 1.0 CD2 A:LEU64 4.9 32.8 1.0 C A:CYS80 4.9 33.6 1.0 C A:CYS57 5.0 35.3 1.0

E.J.Levin, N.L.Elsen, K.D.Seder, J.G.Mccoy, B.G.Fox, G.N.Phillips. X-Ray Structure of A Soluble Rieske-Type Ferredoxin From Mus Musculus. Acta Crystallogr.,Sect.D V. 64 933 2008.
ISSN: ISSN 0907-4449
PubMed: 18703841
DOI: 10.1107/S0907444908021653