Iron in PDB 3dht: The Crystal Structure Determination of Rat (Rattus Norvegicus) Hemoglobin

The structure of The Crystal Structure Determination of Rat (Rattus Norvegicus) Hemoglobin, PDB code: 3dht was solved by K.Neelagandan, P.Sathya Moorthy, M.Balasubramanian, S.Sundaresan, M.N.Ponnuswamy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.26 / 2.98
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	53.710, 53.710, 350.320, 90.00, 90.00, 120.00
R / Rfree (%)	23.9 / 27.5

The binding sites of Iron atom in the The Crystal Structure Determination of Rat (Rattus Norvegicus) Hemoglobin (pdb code 3dht). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the The Crystal Structure Determination of Rat (Rattus Norvegicus) Hemoglobin, PDB code: 3dht:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the The Crystal Structure Determination of Rat (Rattus Norvegicus) Hemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Crystal Structure Determination of Rat (Rattus Norvegicus) Hemoglobin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe142 b:21.1 occ:1.00 FE A:HEM142 0.0 21.1 1.0 O A:HOH149 2.0 2.0 1.0 NB A:HEM142 2.1 19.7 1.0 NC A:HEM142 2.1 20.4 1.0 NA A:HEM142 2.1 20.6 1.0 ND A:HEM142 2.1 20.8 1.0 NE2 A:HIS87 2.5 16.4 1.0 C4A A:HEM142 3.1 20.6 1.0 C1B A:HEM142 3.1 19.6 1.0 C4B A:HEM142 3.1 19.1 1.0 C4C A:HEM142 3.1 20.4 1.0 C1C A:HEM142 3.1 19.8 1.0 C1A A:HEM142 3.1 21.1 1.0 C1D A:HEM142 3.1 21.3 1.0 C4D A:HEM142 3.1 21.4 1.0 CE1 A:HIS87 3.4 16.7 1.0 CHB A:HEM142 3.4 20.5 1.0 CHC A:HEM142 3.4 19.6 1.0 CHD A:HEM142 3.4 21.0 1.0 CHA A:HEM142 3.5 21.4 1.0 CD2 A:HIS87 3.6 16.6 1.0 NE2 A:HIS58 4.0 19.2 1.0 CE1 A:HIS58 4.2 19.4 1.0 C3A A:HEM142 4.3 20.8 1.0 C2A A:HEM142 4.3 20.9 1.0 C3C A:HEM142 4.3 19.0 1.0 C2C A:HEM142 4.3 19.3 1.0 C2B A:HEM142 4.3 18.7 1.0 C3B A:HEM142 4.3 18.8 1.0 C2D A:HEM142 4.3 22.1 1.0 C3D A:HEM142 4.3 21.8 1.0 ND1 A:HIS87 4.6 16.0 1.0 CG A:HIS87 4.7 17.3 1.0

Iron binding site 2 out of 2 in the The Crystal Structure Determination of Rat (Rattus Norvegicus) Hemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Crystal Structure Determination of Rat (Rattus Norvegicus) Hemoglobin within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe147 b:12.3 occ:1.00 FE B:HEM147 0.0 12.3 1.0 ND B:HEM147 2.0 13.1 1.0 NC B:HEM147 2.1 13.0 1.0 NA B:HEM147 2.1 12.5 1.0 NB B:HEM147 2.1 12.9 1.0 O B:HOH149 2.2 11.8 1.0 NE2 B:HIS92 2.4 25.8 1.0 C4C B:HEM147 3.0 13.0 1.0 C1D B:HEM147 3.0 12.8 1.0 C4D B:HEM147 3.0 13.6 1.0 C1A B:HEM147 3.1 13.0 1.0 C1C B:HEM147 3.1 13.0 1.0 C4A B:HEM147 3.1 12.5 1.0 CE1 B:HIS92 3.2 25.7 1.0 C1B B:HEM147 3.2 12.8 1.0 C4B B:HEM147 3.2 12.4 1.0 CHD B:HEM147 3.4 12.8 1.0 CHA B:HEM147 3.4 13.3 1.0 CHC B:HEM147 3.5 12.6 1.0 CHB B:HEM147 3.5 12.2 1.0 CD2 B:HIS92 3.6 25.8 1.0 NE2 B:HIS63 4.1 15.7 1.0 C3C B:HEM147 4.2 12.8 1.0 C2D B:HEM147 4.3 13.3 1.0 C2C B:HEM147 4.3 12.6 1.0 C3D B:HEM147 4.3 14.3 1.0 C2A B:HEM147 4.3 13.4 1.0 C3A B:HEM147 4.3 13.2 1.0 ND1 B:HIS92 4.4 25.4 1.0 C2B B:HEM147 4.4 13.1 1.0 C3B B:HEM147 4.4 12.6 1.0 CG B:HIS92 4.6 25.8 1.0 CE1 B:HIS63 4.8 15.8 1.0

K.Neelagandan, P.Sathya Moorthy, M.Balasubramanian, S.Sundaresan, M.N.Ponnuswamy. The Crystal Structure Determination of Rat (Rattus Norvegicus) Hemoglobin To Be Published.