Iron in PDB 3dr0: Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002

The structure of Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002, PDB code: 3dr0 was solved by W.Bialek, S.Krzywda, M.Jaskolski, A.Szczepaniak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.58 / 1.23
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	82.879, 82.879, 28.277, 90.00, 90.00, 120.00
R / Rfree (%)	10.7 / 13.8

The binding sites of Iron atom in the Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002 (pdb code 3dr0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002, PDB code: 3dr0:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in the Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe94 b:12.5 occ:1.00 FE A:HEM94 0.0 12.5 1.0 NA A:HEM94 2.0 12.4 1.0 ND A:HEM94 2.0 12.7 1.0 NB A:HEM94 2.0 11.7 1.0 NC A:HEM94 2.0 12.9 1.0 NE2 A:HIS18 2.1 7.3 1.0 SD A:MET65 2.3 8.4 1.0 CD2 A:HIS18 3.0 7.1 1.0 C1A A:HEM94 3.0 12.0 1.0 C4B A:HEM94 3.0 11.3 1.0 C1B A:HEM94 3.0 11.3 1.0 C4A A:HEM94 3.0 11.9 1.0 CE1 A:HIS18 3.0 6.8 1.0 C1C A:HEM94 3.0 12.7 1.0 C4D A:HEM94 3.0 13.4 1.0 C1D A:HEM94 3.1 12.9 1.0 C4C A:HEM94 3.1 13.5 1.0 CHB A:HEM94 3.4 11.4 1.0 CE A:MET65 3.4 8.3 1.0 CHA A:HEM94 3.4 12.4 1.0 CHC A:HEM94 3.4 12.5 1.0 CHD A:HEM94 3.4 13.4 1.0 CG A:MET65 3.5 8.8 1.0 CB A:MET65 4.1 8.4 1.0 ND1 A:HIS18 4.2 6.6 1.0 CG A:HIS18 4.2 6.1 1.0 C2A A:HEM94 4.2 12.0 1.0 C3A A:HEM94 4.3 12.0 1.0 C3B A:HEM94 4.3 11.6 1.0 C2B A:HEM94 4.3 11.6 1.0 C2D A:HEM94 4.3 14.2 1.0 C2C A:HEM94 4.3 13.8 1.0 C3C A:HEM94 4.3 14.2 1.0 C3D A:HEM94 4.3 14.5 1.0 CA A:MET65 4.6 8.7 1.0

Iron binding site 2 out of 3 in the Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe94 b:11.1 occ:1.00 FE B:HEM94 0.0 11.1 1.0 NA B:HEM94 2.0 10.9 1.0 NC B:HEM94 2.0 11.9 1.0 NB B:HEM94 2.0 11.1 1.0 ND B:HEM94 2.0 11.7 1.0 NE2 B:HIS18 2.1 5.4 1.0 SD B:MET65 2.3 6.9 1.0 C4A B:HEM94 3.0 10.7 1.0 C4C B:HEM94 3.0 12.6 1.0 C1A B:HEM94 3.0 10.2 1.0 C1D B:HEM94 3.0 11.3 1.0 C1C B:HEM94 3.0 11.7 1.0 C4B B:HEM94 3.0 11.1 1.0 C1B B:HEM94 3.0 10.9 1.0 CE1 B:HIS18 3.0 4.8 1.0 CD2 B:HIS18 3.1 5.6 1.0 C4D B:HEM94 3.1 11.8 1.0 CHB B:HEM94 3.4 10.7 1.0 CHD B:HEM94 3.4 12.9 1.0 CHC B:HEM94 3.4 11.5 1.0 CHA B:HEM94 3.4 11.6 1.0 CE B:MET65 3.5 7.3 1.0 CG B:MET65 3.6 6.6 1.0 CB B:MET65 4.1 6.8 1.0 ND1 B:HIS18 4.2 5.2 1.0 CG B:HIS18 4.2 6.0 1.0 C3C B:HEM94 4.2 13.5 1.0 C2A B:HEM94 4.2 10.7 1.0 C2B B:HEM94 4.3 11.3 1.0 C3B B:HEM94 4.3 10.7 1.0 C3A B:HEM94 4.3 10.6 1.0 C2D B:HEM94 4.3 13.7 1.0 C2C B:HEM94 4.3 13.1 1.0 C3D B:HEM94 4.3 13.4 1.0 CA B:MET65 4.7 6.9 1.0

Iron binding site 3 out of 3 in the Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002 within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe94 b:14.1 occ:1.00 FE C:HEM94 0.0 14.1 1.0 NC C:HEM94 2.0 15.7 1.0 NB C:HEM94 2.0 13.3 1.0 NA C:HEM94 2.0 13.2 1.0 ND C:HEM94 2.0 15.7 1.0 NE2 C:HIS18 2.1 8.6 1.0 SD C:MET65 2.3 10.3 1.0 CE1 C:HIS18 3.0 7.8 1.0 C4C C:HEM94 3.0 16.6 1.0 C1C C:HEM94 3.0 15.6 1.0 C1D C:HEM94 3.0 15.8 1.0 CD2 C:HIS18 3.0 9.6 1.0 C4B C:HEM94 3.0 14.2 1.0 C1A C:HEM94 3.1 13.2 1.0 C4D C:HEM94 3.1 14.8 1.0 C4A C:HEM94 3.1 12.5 1.0 C1B C:HEM94 3.1 13.7 1.0 CHD C:HEM94 3.4 17.3 1.0 CHC C:HEM94 3.4 14.7 1.0 CHB C:HEM94 3.4 12.5 1.0 CE C:MET65 3.4 10.8 1.0 CHA C:HEM94 3.4 13.6 1.0 CG C:MET65 3.5 11.4 1.0 ND1 C:HIS18 4.1 8.1 1.0 CB C:MET65 4.1 11.4 1.0 CG C:HIS18 4.2 8.8 1.0 C2C C:HEM94 4.3 17.4 1.0 C3C C:HEM94 4.3 17.0 1.0 C2D C:HEM94 4.3 17.4 1.0 C2B C:HEM94 4.3 11.9 1.0 C3B C:HEM94 4.3 12.8 1.0 C3D C:HEM94 4.3 16.4 1.0 C2A C:HEM94 4.3 12.8 1.0 C3A C:HEM94 4.3 12.3 1.0 CA C:MET65 4.6 12.2 1.0

W.Bialek, S.Krzywda, M.Jaskolski, A.Szczepaniak. Atomic-Resolution Structure of Reduced Cyanobacterial Cytochrome C6 with An Unusual Sequence Insertion Febs J. V. 276 4426 2009.
ISSN: ISSN 1742-464X
PubMed: 19678839
DOI: 10.1111/J.1742-4658.2009.07150.X