Atomistry » Iron » PDB 3dcp-3e0f » 3dr0
Atomistry »
  Iron »
    PDB 3dcp-3e0f »
      3dr0 »

Iron in PDB 3dr0: Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002

Protein crystallography data

The structure of Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002, PDB code: 3dr0 was solved by W.Bialek, S.Krzywda, M.Jaskolski, A.Szczepaniak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.58 / 1.23
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 82.879, 82.879, 28.277, 90.00, 90.00, 120.00
R / Rfree (%) 10.7 / 13.8

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002 (pdb code 3dr0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002, PDB code: 3dr0:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in 3dr0

Go back to Iron Binding Sites List in 3dr0
Iron binding site 1 out of 3 in the Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe94

b:12.5
occ:1.00
FE A:HEM94 0.0 12.5 1.0
NA A:HEM94 2.0 12.4 1.0
ND A:HEM94 2.0 12.7 1.0
NB A:HEM94 2.0 11.7 1.0
NC A:HEM94 2.0 12.9 1.0
NE2 A:HIS18 2.1 7.3 1.0
SD A:MET65 2.3 8.4 1.0
CD2 A:HIS18 3.0 7.1 1.0
C1A A:HEM94 3.0 12.0 1.0
C4B A:HEM94 3.0 11.3 1.0
C1B A:HEM94 3.0 11.3 1.0
C4A A:HEM94 3.0 11.9 1.0
CE1 A:HIS18 3.0 6.8 1.0
C1C A:HEM94 3.0 12.7 1.0
C4D A:HEM94 3.0 13.4 1.0
C1D A:HEM94 3.1 12.9 1.0
C4C A:HEM94 3.1 13.5 1.0
CHB A:HEM94 3.4 11.4 1.0
CE A:MET65 3.4 8.3 1.0
CHA A:HEM94 3.4 12.4 1.0
CHC A:HEM94 3.4 12.5 1.0
CHD A:HEM94 3.4 13.4 1.0
CG A:MET65 3.5 8.8 1.0
CB A:MET65 4.1 8.4 1.0
ND1 A:HIS18 4.2 6.6 1.0
CG A:HIS18 4.2 6.1 1.0
C2A A:HEM94 4.2 12.0 1.0
C3A A:HEM94 4.3 12.0 1.0
C3B A:HEM94 4.3 11.6 1.0
C2B A:HEM94 4.3 11.6 1.0
C2D A:HEM94 4.3 14.2 1.0
C2C A:HEM94 4.3 13.8 1.0
C3C A:HEM94 4.3 14.2 1.0
C3D A:HEM94 4.3 14.5 1.0
CA A:MET65 4.6 8.7 1.0

Iron binding site 2 out of 3 in 3dr0

Go back to Iron Binding Sites List in 3dr0
Iron binding site 2 out of 3 in the Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe94

b:11.1
occ:1.00
FE B:HEM94 0.0 11.1 1.0
NA B:HEM94 2.0 10.9 1.0
NC B:HEM94 2.0 11.9 1.0
NB B:HEM94 2.0 11.1 1.0
ND B:HEM94 2.0 11.7 1.0
NE2 B:HIS18 2.1 5.4 1.0
SD B:MET65 2.3 6.9 1.0
C4A B:HEM94 3.0 10.7 1.0
C4C B:HEM94 3.0 12.6 1.0
C1A B:HEM94 3.0 10.2 1.0
C1D B:HEM94 3.0 11.3 1.0
C1C B:HEM94 3.0 11.7 1.0
C4B B:HEM94 3.0 11.1 1.0
C1B B:HEM94 3.0 10.9 1.0
CE1 B:HIS18 3.0 4.8 1.0
CD2 B:HIS18 3.1 5.6 1.0
C4D B:HEM94 3.1 11.8 1.0
CHB B:HEM94 3.4 10.7 1.0
CHD B:HEM94 3.4 12.9 1.0
CHC B:HEM94 3.4 11.5 1.0
CHA B:HEM94 3.4 11.6 1.0
CE B:MET65 3.5 7.3 1.0
CG B:MET65 3.6 6.6 1.0
CB B:MET65 4.1 6.8 1.0
ND1 B:HIS18 4.2 5.2 1.0
CG B:HIS18 4.2 6.0 1.0
C3C B:HEM94 4.2 13.5 1.0
C2A B:HEM94 4.2 10.7 1.0
C2B B:HEM94 4.3 11.3 1.0
C3B B:HEM94 4.3 10.7 1.0
C3A B:HEM94 4.3 10.6 1.0
C2D B:HEM94 4.3 13.7 1.0
C2C B:HEM94 4.3 13.1 1.0
C3D B:HEM94 4.3 13.4 1.0
CA B:MET65 4.7 6.9 1.0

Iron binding site 3 out of 3 in 3dr0

Go back to Iron Binding Sites List in 3dr0
Iron binding site 3 out of 3 in the Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Reduced Cytochrome C6 From Synechococcus Sp. Pcc 7002 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe94

b:14.1
occ:1.00
FE C:HEM94 0.0 14.1 1.0
NC C:HEM94 2.0 15.7 1.0
NB C:HEM94 2.0 13.3 1.0
NA C:HEM94 2.0 13.2 1.0
ND C:HEM94 2.0 15.7 1.0
NE2 C:HIS18 2.1 8.6 1.0
SD C:MET65 2.3 10.3 1.0
CE1 C:HIS18 3.0 7.8 1.0
C4C C:HEM94 3.0 16.6 1.0
C1C C:HEM94 3.0 15.6 1.0
C1D C:HEM94 3.0 15.8 1.0
CD2 C:HIS18 3.0 9.6 1.0
C4B C:HEM94 3.0 14.2 1.0
C1A C:HEM94 3.1 13.2 1.0
C4D C:HEM94 3.1 14.8 1.0
C4A C:HEM94 3.1 12.5 1.0
C1B C:HEM94 3.1 13.7 1.0
CHD C:HEM94 3.4 17.3 1.0
CHC C:HEM94 3.4 14.7 1.0
CHB C:HEM94 3.4 12.5 1.0
CE C:MET65 3.4 10.8 1.0
CHA C:HEM94 3.4 13.6 1.0
CG C:MET65 3.5 11.4 1.0
ND1 C:HIS18 4.1 8.1 1.0
CB C:MET65 4.1 11.4 1.0
CG C:HIS18 4.2 8.8 1.0
C2C C:HEM94 4.3 17.4 1.0
C3C C:HEM94 4.3 17.0 1.0
C2D C:HEM94 4.3 17.4 1.0
C2B C:HEM94 4.3 11.9 1.0
C3B C:HEM94 4.3 12.8 1.0
C3D C:HEM94 4.3 16.4 1.0
C2A C:HEM94 4.3 12.8 1.0
C3A C:HEM94 4.3 12.3 1.0
CA C:MET65 4.6 12.2 1.0

Reference:

W.Bialek, S.Krzywda, M.Jaskolski, A.Szczepaniak. Atomic-Resolution Structure of Reduced Cyanobacterial Cytochrome C6 with An Unusual Sequence Insertion Febs J. V. 276 4426 2009.
ISSN: ISSN 1742-464X
PubMed: 19678839
DOI: 10.1111/J.1742-4658.2009.07150.X
Page generated: Sun Dec 13 15:03:52 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy