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Iron in PDB 3e6n: Structure of Murine Inos Oxygenase Domain with Inhibitor Ar-C125813

Enzymatic activity of Structure of Murine Inos Oxygenase Domain with Inhibitor Ar-C125813

All present enzymatic activity of Structure of Murine Inos Oxygenase Domain with Inhibitor Ar-C125813:
1.14.13.39;

Protein crystallography data

The structure of Structure of Murine Inos Oxygenase Domain with Inhibitor Ar-C125813, PDB code: 3e6n was solved by E.D.Garcin, A.S.Arvai, R.J.Rosenfeld, M.D.Kroeger, B.R.Crane, G.Andersson, G.Andrews, P.J.Hamley, P.R.Mallinder, D.J.Nicholls, S.A.St-Gallay, A.C.Tinker, N.P.Gensmantel, A.Mete, D.R.Cheshire, S.Connolly, D.J.Stueh, A.Aberg, A.V.Wallace, J.A.Tainer, E.D.Getzoff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.99 / 2.40
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 213.963, 213.963, 112.082, 90.00, 90.00, 120.00
R / Rfree (%) 23.3 / 27

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Murine Inos Oxygenase Domain with Inhibitor Ar-C125813 (pdb code 3e6n). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Murine Inos Oxygenase Domain with Inhibitor Ar-C125813, PDB code: 3e6n:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 3e6n

Go back to Iron Binding Sites List in 3e6n
Iron binding site 1 out of 2 in the Structure of Murine Inos Oxygenase Domain with Inhibitor Ar-C125813


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Murine Inos Oxygenase Domain with Inhibitor Ar-C125813 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe901

b:28.5
occ:1.00
FE A:HEM901 0.0 28.5 1.0
NA A:HEM901 2.0 24.0 1.0
ND A:HEM901 2.0 23.4 1.0
NC A:HEM901 2.0 23.9 1.0
NB A:HEM901 2.0 24.8 1.0
SG A:CYS194 2.4 34.5 1.0
C4A A:HEM901 3.0 25.8 1.0
C4C A:HEM901 3.0 23.0 1.0
C1B A:HEM901 3.0 24.1 1.0
C1A A:HEM901 3.0 26.8 1.0
C1D A:HEM901 3.0 23.8 1.0
C4D A:HEM901 3.0 25.2 1.0
C4B A:HEM901 3.0 27.4 1.0
C1C A:HEM901 3.1 25.8 1.0
CHB A:HEM901 3.4 26.2 1.0
CHD A:HEM901 3.4 22.9 1.0
CB A:CYS194 3.4 32.0 1.0
CHA A:HEM901 3.4 25.9 1.0
CHC A:HEM901 3.4 27.8 1.0
C7 A:AS3903 3.6 21.6 1.0
C3 A:AS3903 3.7 24.6 1.0
C2 A:AS3903 3.9 24.2 1.0
CA A:CYS194 4.2 33.2 1.0
C3A A:HEM901 4.2 24.0 1.0
C2B A:HEM901 4.2 24.6 1.0
C3C A:HEM901 4.3 22.1 1.0
C2A A:HEM901 4.3 27.2 1.0
C3D A:HEM901 4.3 23.1 1.0
C3B A:HEM901 4.3 25.3 1.0
C2C A:HEM901 4.3 22.9 1.0
C2D A:HEM901 4.3 21.5 1.0
NE1 A:TRP188 4.4 26.4 1.0
C4 A:AS3903 4.5 25.9 1.0
C1 A:AS3903 4.7 26.6 1.0
N A:GLY196 4.9 34.7 1.0
C A:CYS194 4.9 34.6 1.0

Iron binding site 2 out of 2 in 3e6n

Go back to Iron Binding Sites List in 3e6n
Iron binding site 2 out of 2 in the Structure of Murine Inos Oxygenase Domain with Inhibitor Ar-C125813


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Murine Inos Oxygenase Domain with Inhibitor Ar-C125813 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe901

b:30.7
occ:1.00
FE B:HEM901 0.0 30.7 1.0
NC B:HEM901 2.0 23.9 1.0
NA B:HEM901 2.0 23.3 1.0
NB B:HEM901 2.0 26.0 1.0
ND B:HEM901 2.1 24.1 1.0
SG B:CYS194 2.4 35.0 1.0
C4A B:HEM901 3.0 26.4 1.0
C1C B:HEM901 3.0 26.4 1.0
C4C B:HEM901 3.0 26.8 1.0
C1B B:HEM901 3.0 25.6 1.0
C1A B:HEM901 3.1 26.3 1.0
C4D B:HEM901 3.1 25.5 1.0
C1D B:HEM901 3.1 24.7 1.0
C4B B:HEM901 3.1 26.7 1.0
CB B:CYS194 3.3 32.0 1.0
CHB B:HEM901 3.4 25.8 1.0
CHC B:HEM901 3.4 27.0 1.0
CHD B:HEM901 3.4 27.1 1.0
CHA B:HEM901 3.4 26.9 1.0
C7 B:AS3903 3.6 25.0 1.0
C3 B:AS3903 3.7 25.6 1.0
C2 B:AS3903 3.8 24.5 1.0
CA B:CYS194 4.1 34.8 1.0
C3A B:HEM901 4.3 22.6 1.0
C2B B:HEM901 4.3 25.8 1.0
C2C B:HEM901 4.3 24.9 1.0
C3C B:HEM901 4.3 25.1 1.0
C2A B:HEM901 4.3 24.6 1.0
C3D B:HEM901 4.3 25.6 1.0
C2D B:HEM901 4.3 25.1 1.0
C3B B:HEM901 4.3 27.4 1.0
NE1 B:TRP188 4.4 27.1 1.0
C4 B:AS3903 4.5 26.6 1.0
C1 B:AS3903 4.6 28.0 1.0
N B:GLY196 4.9 33.8 1.0
C B:CYS194 4.9 35.2 1.0

Reference:

E.D.Garcin, A.S.Arvai, R.J.Rosenfeld, M.D.Kroeger, B.R.Crane, G.Andersson, G.Andrews, P.J.Hamley, P.R.Mallinder, D.J.Nicholls, S.A.St-Gallay, A.C.Tinker, N.P.Gensmantel, A.Mete, D.R.Cheshire, S.Connolly, D.J.Stuehr, A.Aberg, A.V.Wallace, J.A.Tainer, E.D.Getzoff. Anchored Plasticity Opens Doors For Selective Inhibitor Design in Nitric Oxide Synthase. Nat.Chem.Biol. V. 4 700 2008.
ISSN: ISSN 1552-4450
PubMed: 18849972
DOI: 10.1038/NCHEMBIO.115
Page generated: Sun Aug 4 09:24:43 2024

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